Wall clock time and date at job start Mon Mar 30 2020 02:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30451 * 125.63823 * 2 1 4 4 C 1.34114 * 109.25430 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.02561 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47064 * 90.02434 * 5 4 3 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99913 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99734 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47294 * 60.00559 * 10 8 6 12 12 H 1.48503 * 109.46954 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47431 * 300.00157 * 10 8 6 14 14 C 1.34670 * 107.95112 * 0.26655 * 4 3 2 15 15 N 1.35332 * 125.63755 * 179.97438 * 2 1 3 16 16 C 1.46975 * 142.23260 * 359.72058 * 15 2 1 17 17 C 1.54655 * 105.56582 * 162.33860 * 16 15 2 18 18 C 1.51236 * 143.09310 * 179.49006 * 14 4 3 19 19 H 1.08997 * 109.47250 * 90.01884 * 1 2 3 20 20 H 1.09004 * 109.47005 * 210.02206 * 1 2 3 21 21 H 1.09001 * 109.46805 * 330.01924 * 1 2 3 22 22 H 1.09002 * 109.47152 * 330.02526 * 5 4 3 23 23 H 1.09001 * 109.46980 * 210.02627 * 5 4 3 24 24 H 0.97002 * 119.99768 * 179.97438 * 9 8 6 25 25 H 1.09008 * 110.20626 * 282.01063 * 16 15 2 26 26 H 1.08990 * 110.21114 * 43.90962 * 16 15 2 27 27 H 1.09006 * 111.26294 * 268.07471 * 17 16 15 28 28 H 1.09003 * 110.72860 * 144.37193 * 17 16 15 29 29 H 1.08996 * 110.46929 * 315.40688 * 18 14 4 30 30 H 1.09000 * 110.46870 * 78.00530 * 18 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2671 1.0602 0.0000 4 6 3.5538 0.6819 -0.0006 5 6 4.7479 1.6012 -0.0002 6 6 5.1467 1.9062 1.4207 7 1 4.5912 1.4769 2.2414 8 6 6.2213 2.7324 1.6730 9 7 6.8979 3.2547 0.6736 10 14 6.7159 3.1098 3.4343 11 1 7.0635 1.8461 4.1325 12 1 7.8926 4.0158 3.4346 13 1 5.5848 3.7681 4.1360 14 6 3.5906 -0.6643 -0.0069 15 7 2.2955 -1.0999 0.0005 16 6 2.2409 -2.5686 0.0055 17 6 3.6423 -3.0376 -0.4505 18 6 4.5315 -1.8483 -0.0197 19 1 -0.3633 -0.0003 -1.0276 20 1 -0.3633 -0.8898 0.5142 21 1 -0.3633 0.8902 0.5135 22 1 4.4927 2.5286 -0.5130 23 1 5.5785 1.1181 -0.5150 24 1 7.6537 3.8363 0.8510 25 1 2.0182 -2.9336 1.0082 26 1 1.4878 -2.9198 -0.6997 27 1 3.6789 -3.1817 -1.5304 28 1 3.9331 -3.9490 0.0719 29 1 5.3322 -1.6910 -0.7423 30 1 4.9427 -2.0191 0.9752 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259793541.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:49 Heat of formation + Delta-G solvation = 30.533756 kcal Electronic energy + Delta-G solvation = -13175.295195 eV Core-core repulsion = 10970.240748 eV Total energy + Delta-G solvation = -2205.054447 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.25708 -37.36226 -35.47374 -33.45746 -31.11417 -30.40990 -29.04980 -26.36831 -24.06780 -22.84839 -20.71997 -20.44986 -18.54448 -17.40092 -16.81813 -16.21156 -15.35440 -15.12469 -14.41475 -14.11911 -13.90980 -13.75256 -13.71506 -13.26276 -13.21790 -13.08714 -12.60245 -12.55705 -12.32337 -11.99350 -11.83024 -11.53028 -10.75883 -10.55932 -10.17168 -8.86941 -8.16252 -6.30626 1.19488 1.36784 1.41727 1.49884 2.02612 2.23622 2.46677 3.11162 3.36217 3.68607 3.75049 4.00273 4.21421 4.34257 4.46350 4.62764 4.68298 4.74694 4.88237 4.98403 5.01483 5.04892 5.18130 5.29327 5.42575 5.66906 5.73793 5.91643 6.24993 6.60238 6.77916 7.35338 7.37095 8.92067 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.037732 B = 0.009155 C = 0.008288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.897646 B = 3057.688931 C = 3377.510682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.203 3.797 3 N -0.535 5.535 4 C 0.013 3.987 5 C 0.107 3.893 6 C -0.522 4.522 7 H 0.042 0.958 8 C 0.003 3.997 9 N -0.931 5.931 10 Si 0.969 3.031 11 H -0.263 1.263 12 H -0.274 1.274 13 H -0.274 1.274 14 C -0.068 4.068 15 N -0.482 5.482 16 C 0.099 3.901 17 C -0.112 4.112 18 C -0.053 4.053 19 H 0.093 0.907 20 H 0.098 0.902 21 H 0.083 0.917 22 H -0.012 1.012 23 H 0.010 0.990 24 H 0.266 0.734 25 H 0.101 0.899 26 H 0.113 0.887 27 H 0.092 0.908 28 H 0.127 0.873 29 H 0.079 0.921 30 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.822 -16.044 -0.891 18.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.058 4.058 3 N -0.256 5.256 4 C -0.115 4.115 5 C 0.069 3.931 6 C -0.560 4.560 7 H 0.060 0.940 8 C -0.195 4.195 9 N -0.571 5.571 10 Si 0.793 3.207 11 H -0.188 1.188 12 H -0.199 1.199 13 H -0.199 1.199 14 C -0.182 4.182 15 N -0.169 5.169 16 C -0.020 4.020 17 C -0.150 4.150 18 C -0.091 4.091 19 H 0.111 0.889 20 H 0.117 0.883 21 H 0.102 0.898 22 H 0.006 0.994 23 H 0.028 0.972 24 H 0.075 0.925 25 H 0.119 0.881 26 H 0.131 0.869 27 H 0.111 0.889 28 H 0.145 0.855 29 H 0.097 0.903 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.175 -15.280 -0.938 18.382 hybrid contribution 0.842 0.236 0.649 1.089 sum -9.333 -15.045 -0.289 17.707 Atomic orbital electron populations 1.20241 0.81788 1.04705 1.04427 1.23843 0.96921 0.79588 1.05468 1.70131 1.02471 1.29899 1.23142 1.20512 0.92696 0.92016 1.06244 1.17231 0.88222 0.91392 0.96213 1.21211 1.13441 1.29193 0.92146 0.93996 1.25950 0.96023 0.95294 1.02184 1.70081 1.20722 1.33142 1.33134 0.85450 0.77730 0.78582 0.78936 1.18801 1.19891 1.19950 1.22491 0.87834 0.95140 1.12770 1.46816 1.06582 1.08407 1.55126 1.22731 1.01031 0.73797 1.04464 1.22815 0.90909 0.97837 1.03396 1.20667 0.96246 0.89352 1.02876 0.88867 0.88348 0.89845 0.99410 0.97224 0.92472 0.88063 0.86852 0.88927 0.85472 0.90269 0.89958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.31 10.51 71.24 0.75 -0.56 16 2 C 0.20 7.74 8.16 138.05 1.13 8.87 16 3 N -0.54 -27.14 11.25 -176.12 -1.98 -29.12 16 4 C 0.01 0.68 6.29 41.39 0.26 0.94 16 5 C 0.11 6.63 5.52 29.10 0.16 6.79 16 6 C -0.52 -33.11 9.09 25.60 0.23 -32.88 16 7 H 0.04 2.67 7.74 -2.91 -0.02 2.64 16 8 C 0.00 0.20 5.46 84.66 0.46 0.66 16 9 N -0.93 -59.45 13.29 21.45 0.28 -59.16 16 10 Si 0.97 47.07 29.54 68.60 2.03 49.09 16 11 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 13 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 14 C -0.07 -2.90 7.41 41.16 0.31 -2.60 16 15 N -0.48 -16.46 3.61 -495.09 -1.79 -18.24 16 16 C 0.10 1.98 7.78 86.85 0.68 2.65 16 17 C -0.11 -2.04 7.17 31.71 0.23 -1.82 16 18 C -0.05 -1.64 6.84 30.57 0.21 -1.43 16 19 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 20 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 21 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 22 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 23 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 24 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 25 H 0.10 1.64 8.14 -2.38 -0.02 1.63 16 26 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 28 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -82.52 258.83 4.06 -78.46 By element: Atomic # 1 Polarization: -2.76 SS G_CDS: 1.11 Total: -1.64 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: 4.41 Total: -19.38 kcal Atomic # 7 Polarization: -103.05 SS G_CDS: -3.48 Total: -106.53 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.09 kcal Total: -82.52 4.06 -78.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259793541.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.993 kcal (2) G-P(sol) polarization free energy of solvation -82.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds