Wall clock time and date at job start Mon Mar 30 2020 02:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35204 * 126.00569 * 2 1 4 4 C 1.34570 * 107.61682 * 180.34372 * 3 2 1 5 5 C 1.40487 * 108.03791 * 359.50394 * 4 3 2 6 6 N 1.30131 * 108.22660 * 0.50887 * 5 4 3 7 7 C 1.50944 * 123.48871 * 180.38960 * 5 4 3 8 8 C 1.53376 * 108.20605 * 16.83920 * 7 5 4 9 9 H 1.09002 * 109.42086 * 69.43906 * 8 7 5 10 10 C 1.50703 * 109.42838 * 189.32521 * 8 7 5 11 11 H 1.08000 * 119.99800 * 119.99973 * 10 8 7 12 12 C 1.37873 * 120.00343 * 300.00751 * 10 8 7 13 13 N 1.31505 * 120.00287 * 179.97438 * 12 10 8 14 14 Si 1.86810 * 119.99926 * 359.97438 * 12 10 8 15 15 H 1.48496 * 109.46986 * 90.00133 * 14 12 10 16 16 H 1.48502 * 109.46949 * 210.00573 * 14 12 10 17 17 H 1.48506 * 109.46904 * 330.00436 * 14 12 10 18 18 C 1.53019 * 109.74741 * 309.35967 * 8 7 5 19 19 C 1.50880 * 128.32481 * 180.02562 * 4 3 2 20 20 H 1.09002 * 109.47045 * 89.99848 * 1 2 3 21 21 H 1.08994 * 109.47251 * 210.00491 * 1 2 3 22 22 H 1.09003 * 109.47063 * 330.00413 * 1 2 3 23 23 H 1.08002 * 126.18722 * 0.07122 * 3 2 1 24 24 H 1.08998 * 109.72084 * 136.52007 * 7 5 4 25 25 H 1.08998 * 109.72089 * 257.12274 * 7 5 4 26 26 H 0.97004 * 120.00206 * 179.97438 * 13 12 10 27 27 H 1.09002 * 109.43105 * 191.81100 * 18 8 7 28 28 H 1.09004 * 109.42871 * 311.70885 * 18 8 7 29 29 H 1.09001 * 109.92041 * 76.54981 * 19 4 3 30 30 H 1.08996 * 109.61707 * 315.88886 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2598 1.0937 0.0000 4 6 3.5368 0.6692 -0.0077 5 6 3.5282 -0.7356 -0.0010 6 7 2.2898 -1.1351 -0.0008 7 6 4.7820 -1.5761 0.0020 8 6 5.9569 -0.6826 0.4189 9 1 5.8552 -0.4180 1.4714 10 6 7.2508 -1.4270 0.2120 11 1 7.9993 -1.0326 -0.4593 12 6 7.4790 -2.6116 0.8795 13 7 8.6079 -3.2614 0.6985 14 14 6.1846 -3.2936 2.0410 15 1 5.2638 -4.1831 1.2885 16 1 6.8474 -4.0673 3.1215 17 1 5.4136 -2.1726 2.6361 18 6 5.9632 0.5918 -0.4280 19 6 4.7980 1.4973 -0.0104 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3633 0.8900 0.5138 23 1 1.9295 2.1220 0.0011 24 1 4.6735 -2.3960 0.7119 25 1 4.9594 -1.9756 -0.9966 26 1 8.7686 -4.0947 1.1684 27 1 6.9048 1.1207 -0.2803 28 1 5.8565 0.3284 -1.4804 29 1 4.9824 1.8964 0.9870 30 1 4.6960 2.3172 -0.7213 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259804157.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:03 Heat of formation + Delta-G solvation = 69.616594 kcal Electronic energy + Delta-G solvation = -13390.484069 eV Core-core repulsion = 11187.124381 eV Total energy + Delta-G solvation = -2203.359688 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.95828 -36.36659 -32.81896 -32.14110 -30.95222 -28.04323 -27.13194 -24.34037 -22.43803 -20.56119 -20.00508 -18.07908 -16.71449 -16.15314 -15.23485 -14.74751 -14.11865 -13.49822 -13.22556 -13.08118 -12.60629 -12.54433 -12.26203 -12.11525 -11.30788 -11.06138 -10.81685 -10.45118 -10.22574 -9.83748 -9.63959 -9.13612 -9.00422 -8.68663 -8.49652 -7.83096 -6.03447 -4.02553 2.26186 2.84183 3.26513 3.34982 3.45034 3.48319 4.46199 4.68415 5.05181 5.16778 5.25480 5.36738 5.43396 5.76509 5.79593 5.87987 6.11944 6.33770 6.40147 6.48267 6.55693 6.70001 6.85921 7.01158 7.14080 7.33883 7.39585 7.60152 7.81692 8.20925 8.57549 9.01596 9.59675 11.09680 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.043911 B = 0.010858 C = 0.009168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.493577 B = 2578.103633 C = 3053.310566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.398 5.398 3 C 0.041 3.959 4 C -0.225 4.225 5 C 0.096 3.904 6 N -0.306 5.306 7 C -0.045 4.045 8 C 0.019 3.981 9 H 0.030 0.970 10 C -0.512 4.512 11 H 0.077 0.923 12 C 0.072 3.928 13 N -0.900 5.900 14 Si 0.877 3.123 15 H -0.276 1.276 16 H -0.296 1.296 17 H -0.264 1.264 18 C -0.097 4.097 19 C -0.043 4.043 20 H 0.066 0.934 21 H 0.083 0.917 22 H 0.080 0.920 23 H 0.167 0.833 24 H 0.061 0.939 25 H 0.083 0.917 26 H 0.263 0.737 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.864 8.872 -0.802 16.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.181 5.181 3 C -0.102 4.102 4 C -0.236 4.236 5 C -0.072 4.072 6 N -0.127 5.127 7 C -0.084 4.084 8 C 0.000 4.000 9 H 0.049 0.951 10 C -0.549 4.549 11 H 0.095 0.905 12 C -0.130 4.130 13 N -0.539 5.539 14 Si 0.708 3.292 15 H -0.203 1.203 16 H -0.223 1.223 17 H -0.189 1.189 18 C -0.135 4.135 19 C -0.081 4.081 20 H 0.085 0.915 21 H 0.101 0.899 22 H 0.098 0.902 23 H 0.184 0.816 24 H 0.079 0.921 25 H 0.102 0.898 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.735 7.727 -0.754 16.655 hybrid contribution -0.418 0.168 0.638 0.782 sum -15.153 7.896 -0.116 17.087 Atomic orbital electron populations 1.21657 0.75209 1.03741 1.02568 1.48466 1.05936 1.03787 1.59928 1.21890 0.90975 0.92905 1.04473 1.20259 0.94559 0.94280 1.14507 1.22987 0.93342 0.94487 0.96407 1.77062 1.01823 1.07609 1.26180 1.20911 0.88209 0.96942 1.02363 1.19182 0.92886 0.92178 0.95777 0.95145 1.21072 1.00459 1.06286 1.27126 0.90500 1.25008 0.95143 0.96663 0.96175 1.69891 1.24264 1.16696 1.43005 0.86992 0.81632 0.79518 0.81106 1.20297 1.22327 1.18935 1.21475 0.95987 0.96271 0.99775 1.20102 0.91267 0.96229 1.00529 0.91525 0.89872 0.90153 0.81572 0.92087 0.89824 0.92667 0.91944 0.92789 0.91843 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.13 11.47 59.85 0.69 1.82 16 2 N -0.40 -6.42 4.02 -68.29 -0.27 -6.70 16 3 C 0.04 0.62 11.45 -17.36 -0.20 0.42 16 4 C -0.22 -4.14 5.89 -104.98 -0.62 -4.76 16 5 C 0.10 2.05 7.10 -82.35 -0.58 1.47 16 6 N -0.31 -6.32 12.56 33.75 0.42 -5.89 16 7 C -0.05 -1.05 4.90 -27.57 -0.13 -1.19 16 8 C 0.02 0.46 1.64 -91.57 -0.15 0.31 16 9 H 0.03 0.76 7.15 -51.93 -0.37 0.38 16 10 C -0.51 -14.32 9.09 -34.44 -0.31 -14.63 16 11 H 0.08 2.29 7.99 -52.49 -0.42 1.88 16 12 C 0.07 2.08 5.45 -17.83 -0.10 1.99 16 13 N -0.90 -27.65 13.96 55.43 0.77 -26.87 16 14 Si 0.88 22.49 24.28 -169.99 -4.13 18.36 16 15 H -0.28 -6.98 6.95 56.52 0.39 -6.59 16 16 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 17 H -0.26 -6.64 6.51 56.52 0.37 -6.27 16 18 C -0.10 -1.95 5.12 -26.54 -0.14 -2.09 16 19 C -0.04 -0.73 6.28 -27.61 -0.17 -0.90 16 20 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 21 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.17 1.79 8.06 -52.49 -0.42 1.37 16 24 H 0.06 1.51 3.63 -51.93 -0.19 1.32 16 25 H 0.08 1.95 8.12 -51.93 -0.42 1.53 16 26 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 27 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 28 H 0.05 1.08 8.10 -51.93 -0.42 0.66 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 243.93 15.07 3.68 3.68 Total: -1.00 -32.85 243.93 -5.20 -38.06 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -3.95 Total: -3.07 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -1.72 Total: -17.56 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.92 Total: -39.46 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.13 Total: 18.36 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -32.85 -5.20 -38.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259804157.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.673 kcal (2) G-P(sol) polarization free energy of solvation -32.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds