Wall clock time and date at job start Mon Mar 30 2020 02:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35204 * 126.00569 * 2 1 4 4 C 1.34570 * 107.61682 * 180.34372 * 3 2 1 5 5 C 1.40487 * 108.03791 * 359.50394 * 4 3 2 6 6 N 1.30131 * 108.22660 * 0.50887 * 5 4 3 7 7 C 1.50944 * 123.48871 * 180.38960 * 5 4 3 8 8 C 1.53376 * 108.20605 * 16.83920 * 7 5 4 9 9 H 1.09002 * 109.42086 * 69.43906 * 8 7 5 10 10 C 1.50703 * 109.42838 * 189.32521 * 8 7 5 11 11 H 1.08000 * 119.99800 * 119.99973 * 10 8 7 12 12 C 1.37873 * 120.00343 * 300.00751 * 10 8 7 13 13 N 1.31505 * 120.00287 * 179.97438 * 12 10 8 14 14 Si 1.86810 * 119.99926 * 359.97438 * 12 10 8 15 15 H 1.48496 * 109.46986 * 90.00133 * 14 12 10 16 16 H 1.48502 * 109.46949 * 210.00573 * 14 12 10 17 17 H 1.48506 * 109.46904 * 330.00436 * 14 12 10 18 18 C 1.53019 * 109.74741 * 309.35967 * 8 7 5 19 19 C 1.50880 * 128.32481 * 180.02562 * 4 3 2 20 20 H 1.09002 * 109.47045 * 89.99848 * 1 2 3 21 21 H 1.08994 * 109.47251 * 210.00491 * 1 2 3 22 22 H 1.09003 * 109.47063 * 330.00413 * 1 2 3 23 23 H 1.08002 * 126.18722 * 0.07122 * 3 2 1 24 24 H 1.08998 * 109.72084 * 136.52007 * 7 5 4 25 25 H 1.08998 * 109.72089 * 257.12274 * 7 5 4 26 26 H 0.97004 * 120.00206 * 179.97438 * 13 12 10 27 27 H 1.09002 * 109.43105 * 191.81100 * 18 8 7 28 28 H 1.09004 * 109.42871 * 311.70885 * 18 8 7 29 29 H 1.09001 * 109.92041 * 76.54981 * 19 4 3 30 30 H 1.08996 * 109.61707 * 315.88886 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2598 1.0937 0.0000 4 6 3.5368 0.6692 -0.0077 5 6 3.5282 -0.7356 -0.0010 6 7 2.2898 -1.1351 -0.0008 7 6 4.7820 -1.5761 0.0020 8 6 5.9569 -0.6826 0.4189 9 1 5.8552 -0.4180 1.4714 10 6 7.2508 -1.4270 0.2120 11 1 7.9993 -1.0326 -0.4593 12 6 7.4790 -2.6116 0.8795 13 7 8.6079 -3.2614 0.6985 14 14 6.1846 -3.2936 2.0410 15 1 5.2638 -4.1831 1.2885 16 1 6.8474 -4.0673 3.1215 17 1 5.4136 -2.1726 2.6361 18 6 5.9632 0.5918 -0.4280 19 6 4.7980 1.4973 -0.0104 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3633 0.8900 0.5138 23 1 1.9295 2.1220 0.0011 24 1 4.6735 -2.3960 0.7119 25 1 4.9594 -1.9756 -0.9966 26 1 8.7686 -4.0947 1.1684 27 1 6.9048 1.1207 -0.2803 28 1 5.8565 0.3284 -1.4804 29 1 4.9824 1.8964 0.9870 30 1 4.6960 2.3172 -0.7213 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259804157.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:02 Heat of formation + Delta-G solvation = 46.990386 kcal Electronic energy + Delta-G solvation = -13391.465215 eV Core-core repulsion = 11187.124381 eV Total energy + Delta-G solvation = -2204.340834 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.29593 -38.01568 -34.67976 -33.54221 -32.60631 -29.50587 -28.63772 -26.05746 -23.92051 -22.08383 -21.49062 -19.63109 -18.83517 -17.41649 -16.64240 -16.48127 -15.58071 -15.01890 -14.91844 -14.73050 -14.20437 -13.77107 -13.66344 -13.37691 -13.06889 -12.79506 -12.41881 -12.17436 -11.98371 -11.69229 -11.36347 -11.06250 -10.91307 -10.65258 -10.11289 -9.11084 -8.30978 -6.32973 0.99745 1.28348 1.31985 1.41929 1.74409 1.84341 2.29724 3.03918 3.56372 3.98541 4.21845 4.24864 4.35598 4.44528 4.47750 4.63366 4.70153 4.78120 4.83057 4.94578 5.03755 5.15588 5.25719 5.44960 5.52231 5.66306 5.74374 5.82775 6.30339 6.34803 6.74116 6.83268 7.32618 8.85835 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.043911 B = 0.010858 C = 0.009168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.493577 B = 2578.103633 C = 3053.310566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.390 5.390 3 C 0.070 3.930 4 C -0.256 4.256 5 C 0.063 3.937 6 N -0.344 5.344 7 C -0.040 4.040 8 C 0.021 3.979 9 H 0.023 0.977 10 C -0.513 4.513 11 H 0.045 0.955 12 C 0.021 3.979 13 N -0.945 5.945 14 Si 0.937 3.063 15 H -0.274 1.274 16 H -0.292 1.292 17 H -0.257 1.257 18 C -0.095 4.095 19 C -0.031 4.031 20 H 0.085 0.915 21 H 0.081 0.919 22 H 0.122 0.878 23 H 0.223 0.777 24 H 0.043 0.957 25 H 0.068 0.932 26 H 0.266 0.734 27 H 0.061 0.939 28 H 0.047 0.953 29 H 0.072 0.928 30 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.956 11.205 -0.404 20.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.173 5.173 3 C -0.075 4.075 4 C -0.267 4.267 5 C -0.103 4.103 6 N -0.167 5.167 7 C -0.079 4.079 8 C 0.002 3.998 9 H 0.041 0.959 10 C -0.551 4.551 11 H 0.063 0.937 12 C -0.177 4.177 13 N -0.585 5.585 14 Si 0.765 3.235 15 H -0.201 1.201 16 H -0.219 1.219 17 H -0.181 1.181 18 C -0.133 4.133 19 C -0.069 4.069 20 H 0.103 0.897 21 H 0.100 0.900 22 H 0.140 0.860 23 H 0.239 0.761 24 H 0.061 0.939 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -17.845 10.062 -0.359 20.490 hybrid contribution 0.455 -0.499 0.439 0.806 sum -17.391 9.563 0.080 19.847 Atomic orbital electron populations 1.22158 0.71819 1.05790 1.04456 1.48921 1.07770 1.02902 1.57722 1.22618 0.89472 0.94714 1.00729 1.20486 0.96558 0.92934 1.16725 1.22630 0.92824 0.95803 0.99047 1.76927 1.02118 1.10316 1.27320 1.20549 0.89903 0.96624 1.00872 1.19098 0.90937 0.93686 0.96076 0.95906 1.21411 1.01679 1.06356 1.25670 0.93677 1.25724 0.96858 0.97193 0.97920 1.70014 1.26261 1.17519 1.44731 0.86025 0.79249 0.79017 0.79219 1.20093 1.21878 1.18147 1.21401 0.98003 0.95210 0.98677 1.20023 0.88983 0.96002 1.01910 0.89671 0.90007 0.86010 0.76080 0.93934 0.91365 0.92492 0.91991 0.93396 0.90950 0.88845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.54 11.47 127.77 1.47 3.00 16 2 N -0.39 -11.04 4.02 -369.97 -1.49 -12.53 16 3 C 0.07 1.77 11.45 83.33 0.95 2.72 16 4 C -0.26 -8.65 5.89 -20.10 -0.12 -8.76 16 5 C 0.06 2.65 7.10 43.44 0.31 2.95 16 6 N -0.34 -13.66 12.56 -47.14 -0.59 -14.25 16 7 C -0.04 -1.91 4.90 30.05 0.15 -1.77 16 8 C 0.02 1.04 1.64 -11.41 -0.02 1.02 16 9 H 0.02 1.14 7.15 -2.39 -0.02 1.12 16 10 C -0.51 -29.81 9.09 25.60 0.23 -29.57 16 11 H 0.04 2.83 7.99 -2.91 -0.02 2.81 16 12 C 0.02 1.23 5.45 84.66 0.46 1.69 16 13 N -0.94 -60.05 13.96 21.44 0.30 -59.75 16 14 Si 0.94 47.78 24.28 68.60 1.67 49.44 16 15 H -0.27 -13.77 6.95 99.48 0.69 -13.08 16 16 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 17 H -0.26 -12.65 6.51 99.48 0.65 -12.00 16 18 C -0.10 -3.77 5.12 30.72 0.16 -3.61 16 19 C -0.03 -0.96 6.28 30.03 0.19 -0.77 16 20 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 21 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.22 3.03 8.06 -2.91 -0.02 3.01 16 24 H 0.04 2.13 3.63 -2.39 -0.01 2.12 16 25 H 0.07 3.32 8.12 -2.39 -0.02 3.30 16 26 H 0.27 15.87 8.31 -92.70 -0.77 15.10 16 27 H 0.06 2.40 8.08 -2.39 -0.02 2.38 16 28 H 0.05 1.91 8.10 -2.39 -0.02 1.89 16 29 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -74.41 243.93 4.71 -69.70 By element: Atomic # 1 Polarization: -0.56 SS G_CDS: 1.05 Total: 0.49 kcal Atomic # 6 Polarization: -36.88 SS G_CDS: 3.78 Total: -33.10 kcal Atomic # 7 Polarization: -84.75 SS G_CDS: -1.78 Total: -86.53 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 1.67 Total: 49.44 kcal Total: -74.41 4.71 -69.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259804157.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.687 kcal (2) G-P(sol) polarization free energy of solvation -74.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds