Wall clock time and date at job start Mon Mar 30 2020 02:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32150 * 120.00020 * 2 1 4 4 C 1.32131 * 120.00314 * 179.71361 * 3 2 1 5 5 C 1.38396 * 119.99263 * 0.49192 * 4 3 2 6 6 C 1.50697 * 119.99809 * 179.78467 * 5 4 3 7 7 C 1.52997 * 109.47466 * 84.72192 * 6 5 4 8 8 C 1.50701 * 109.47212 * 179.97438 * 7 6 5 9 9 H 1.07998 * 120.00129 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99861 * 179.97438 * 8 7 6 11 11 N 1.31510 * 119.99913 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99734 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47432 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.46890 * 120.00210 * 12 10 8 15 15 H 1.48501 * 109.47062 * 240.00257 * 12 10 8 16 16 N 1.32123 * 119.99809 * 359.50432 * 5 4 3 17 17 C 1.32157 * 120.00007 * 0.25484 * 16 5 4 18 18 C 1.50699 * 119.99589 * 179.97438 * 17 16 5 19 19 H 1.09001 * 109.47011 * 270.02568 * 1 2 3 20 20 H 1.08997 * 109.46577 * 30.02698 * 1 2 3 21 21 H 1.09001 * 109.46702 * 150.02142 * 1 2 3 22 22 H 1.07989 * 120.00430 * 180.24773 * 4 3 2 23 23 H 1.09002 * 109.47120 * 324.71945 * 6 5 4 24 24 H 1.08998 * 109.46862 * 204.72747 * 6 5 4 25 25 H 1.09002 * 109.47153 * 59.99773 * 7 6 5 26 26 H 1.09001 * 109.46832 * 299.99964 * 7 6 5 27 27 H 0.97002 * 119.99768 * 179.97438 * 11 10 8 28 28 H 1.09009 * 109.47000 * 90.00205 * 18 17 16 29 29 H 1.09005 * 109.46869 * 209.99632 * 18 17 16 30 30 H 1.08996 * 109.47645 * 330.00304 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4891 1.1445 0.0057 5 6 4.1810 -0.0541 0.0014 6 6 5.6880 -0.0541 0.0030 7 6 6.1965 0.0726 1.4405 8 6 7.7035 0.0719 1.4421 9 1 8.2445 -0.0102 0.5109 10 6 8.3917 0.1771 2.6322 11 7 7.7329 0.2776 3.7660 12 14 10.2596 0.1770 2.6341 13 1 10.7561 0.0542 1.2399 14 1 10.7541 1.4465 3.2251 15 1 10.7537 -0.9691 3.4388 16 7 3.5203 -1.1982 0.0015 17 6 2.1987 -1.1981 0.0006 18 6 1.4452 -2.5032 0.0001 19 1 -0.3633 0.0005 1.0277 20 1 -0.3632 0.8897 -0.5143 21 1 -0.3633 -0.8902 -0.5135 22 1 4.0290 2.0797 0.0098 23 1 6.0520 0.7873 -0.5866 24 1 6.0517 -0.9857 -0.4304 25 1 5.8325 -0.7689 2.0301 26 1 5.8327 1.0042 1.8737 27 1 8.2171 0.3512 4.6033 28 1 1.2628 -2.8178 1.0277 29 1 0.4931 -2.3728 -0.5144 30 1 2.0346 -3.2629 -0.5132 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259813639.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:58 Heat of formation + Delta-G solvation = 20.696167 kcal Electronic energy + Delta-G solvation = -12713.872120 eV Core-core repulsion = 10508.391083 eV Total energy + Delta-G solvation = -2205.481037 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.86414 -35.10640 -34.11958 -33.09073 -30.96748 -28.65698 -27.27513 -24.72692 -22.93505 -22.10716 -20.28212 -17.56843 -16.43253 -15.70390 -15.13086 -14.55882 -14.38421 -13.32670 -13.02753 -12.96240 -12.80001 -12.62193 -12.37727 -12.07469 -11.62453 -11.24014 -11.09450 -10.96259 -10.68571 -10.44282 -9.98158 -9.67558 -9.19920 -8.62355 -8.40180 -8.36208 -6.02580 -4.05981 1.13834 1.52312 3.30758 3.38128 3.42240 3.99191 4.31334 4.42138 4.46210 4.77287 4.93082 5.33472 5.34129 5.38049 5.53342 5.58609 5.66991 5.69546 5.85888 5.90961 6.15493 6.38948 6.55126 6.72670 6.97468 7.61531 7.65836 7.76074 7.95662 8.22850 8.34911 9.00512 9.58345 11.08762 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.062321 B = 0.006383 C = 0.006238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.178665 B = 4385.395854 C = 4487.187096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.048 3.952 3 N -0.439 5.439 4 C 0.045 3.955 5 C 0.108 3.892 6 C -0.066 4.066 7 C 0.031 3.969 8 C -0.521 4.521 9 H 0.059 0.941 10 C 0.057 3.943 11 N -0.894 5.894 12 Si 0.895 3.105 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.284 1.284 16 N -0.440 5.440 17 C 0.078 3.922 18 C -0.101 4.101 19 H 0.077 0.923 20 H 0.074 0.926 21 H 0.077 0.923 22 H 0.168 0.832 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.019 0.981 26 H 0.018 0.982 27 H 0.261 0.739 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.388 -1.870 -7.444 14.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.093 4.093 3 N -0.153 5.153 4 C -0.115 4.115 5 C -0.032 4.032 6 C -0.104 4.104 7 C -0.006 4.006 8 C -0.559 4.559 9 H 0.077 0.923 10 C -0.144 4.144 11 N -0.534 5.534 12 Si 0.722 3.278 13 H -0.196 1.196 14 H -0.210 1.210 15 H -0.210 1.210 16 N -0.155 5.155 17 C -0.062 4.062 18 C -0.158 4.158 19 H 0.095 0.905 20 H 0.093 0.907 21 H 0.096 0.904 22 H 0.186 0.814 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.038 0.962 26 H 0.036 0.964 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.379 -1.850 -7.266 14.473 hybrid contribution 1.130 0.102 0.272 1.166 sum -11.250 -1.749 -6.995 13.362 Atomic orbital electron populations 1.20662 0.88467 1.03263 1.03005 1.21920 0.97927 0.89397 1.00016 1.68193 1.09091 1.29096 1.08924 1.23578 0.90056 0.99806 0.98086 1.22845 0.99593 0.88708 0.92025 1.20820 0.84475 1.02563 1.02589 1.19078 0.95881 0.97534 0.88135 1.21223 0.91244 1.50450 0.92992 0.92284 1.25028 0.98617 0.95189 0.95586 1.69984 1.35441 1.50204 0.97724 0.86496 0.85540 0.77590 0.78144 1.19629 1.20986 1.20990 1.68227 1.07482 1.30037 1.09793 1.22076 0.90951 0.96366 0.96847 1.20728 0.99021 0.92834 1.03260 0.90484 0.90731 0.90430 0.81445 0.90834 0.90828 0.96228 0.96387 0.92971 0.90186 0.90377 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.02 9.79 36.01 0.35 -0.66 16 2 C 0.05 0.73 6.79 -82.41 -0.56 0.18 16 3 N -0.44 -7.66 10.42 -9.29 -0.10 -7.76 16 4 C 0.05 0.82 10.90 -17.36 -0.19 0.63 16 5 C 0.11 2.14 6.04 -82.41 -0.50 1.64 16 6 C -0.07 -1.39 5.44 -27.89 -0.15 -1.54 16 7 C 0.03 0.82 4.95 -27.88 -0.14 0.68 16 8 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 9 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 10 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 11 N -0.89 -27.09 13.29 55.43 0.74 -26.35 16 12 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 13 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 16 N -0.44 -8.54 10.35 -5.56 -0.06 -8.60 16 17 C 0.08 1.26 6.79 -82.41 -0.56 0.70 16 18 C -0.10 -1.15 9.79 36.01 0.35 -0.79 16 19 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 20 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 21 H 0.08 0.62 5.95 -51.93 -0.31 0.31 16 22 H 0.17 2.69 8.06 -52.49 -0.42 2.27 16 23 H 0.07 1.41 8.12 -51.93 -0.42 0.99 16 24 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 25 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 29 H 0.08 0.65 5.95 -51.93 -0.31 0.34 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 261.09 15.07 3.93 3.93 Total: -1.00 -32.24 261.09 -6.27 -38.51 By element: Atomic # 1 Polarization: 0.26 SS G_CDS: -3.96 Total: -3.71 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -1.80 Total: -12.60 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: 0.58 Total: -42.71 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -32.24 -6.27 -38.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259813639.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.208 kcal (2) G-P(sol) polarization free energy of solvation -32.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds