Wall clock time and date at job start Mon Mar 30 2020 02:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32150 * 120.00020 * 2 1 4 4 C 1.32131 * 120.00314 * 179.71361 * 3 2 1 5 5 C 1.38396 * 119.99263 * 0.49192 * 4 3 2 6 6 C 1.50697 * 119.99809 * 179.78467 * 5 4 3 7 7 C 1.52997 * 109.47466 * 84.72192 * 6 5 4 8 8 C 1.50701 * 109.47212 * 179.97438 * 7 6 5 9 9 H 1.07998 * 120.00129 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99861 * 179.97438 * 8 7 6 11 11 N 1.31510 * 119.99913 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99734 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47432 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.46890 * 120.00210 * 12 10 8 15 15 H 1.48501 * 109.47062 * 240.00257 * 12 10 8 16 16 N 1.32123 * 119.99809 * 359.50432 * 5 4 3 17 17 C 1.32157 * 120.00007 * 0.25484 * 16 5 4 18 18 C 1.50699 * 119.99589 * 179.97438 * 17 16 5 19 19 H 1.09001 * 109.47011 * 270.02568 * 1 2 3 20 20 H 1.08997 * 109.46577 * 30.02698 * 1 2 3 21 21 H 1.09001 * 109.46702 * 150.02142 * 1 2 3 22 22 H 1.07989 * 120.00430 * 180.24773 * 4 3 2 23 23 H 1.09002 * 109.47120 * 324.71945 * 6 5 4 24 24 H 1.08998 * 109.46862 * 204.72747 * 6 5 4 25 25 H 1.09002 * 109.47153 * 59.99773 * 7 6 5 26 26 H 1.09001 * 109.46832 * 299.99964 * 7 6 5 27 27 H 0.97002 * 119.99768 * 179.97438 * 11 10 8 28 28 H 1.09009 * 109.47000 * 90.00205 * 18 17 16 29 29 H 1.09005 * 109.46869 * 209.99632 * 18 17 16 30 30 H 1.08996 * 109.47645 * 330.00304 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4891 1.1445 0.0057 5 6 4.1810 -0.0541 0.0014 6 6 5.6880 -0.0541 0.0030 7 6 6.1965 0.0726 1.4405 8 6 7.7035 0.0719 1.4421 9 1 8.2445 -0.0102 0.5109 10 6 8.3917 0.1771 2.6322 11 7 7.7329 0.2776 3.7660 12 14 10.2596 0.1770 2.6341 13 1 10.7561 0.0542 1.2399 14 1 10.7541 1.4465 3.2251 15 1 10.7537 -0.9691 3.4388 16 7 3.5203 -1.1982 0.0015 17 6 2.1987 -1.1981 0.0006 18 6 1.4452 -2.5032 0.0001 19 1 -0.3633 0.0005 1.0277 20 1 -0.3632 0.8897 -0.5143 21 1 -0.3633 -0.8902 -0.5135 22 1 4.0290 2.0797 0.0098 23 1 6.0520 0.7873 -0.5866 24 1 6.0517 -0.9857 -0.4304 25 1 5.8325 -0.7689 2.0301 26 1 5.8327 1.0042 1.8737 27 1 8.2171 0.3512 4.6033 28 1 1.2628 -2.8178 1.0277 29 1 0.4931 -2.3728 -0.5144 30 1 2.0346 -3.2629 -0.5132 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259813639.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:58 Heat of formation + Delta-G solvation = -0.775936 kcal Electronic energy + Delta-G solvation = -12714.803220 eV Core-core repulsion = 10508.391083 eV Total energy + Delta-G solvation = -2206.412137 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.18362 -36.69106 -35.43980 -34.91044 -32.70807 -29.71409 -28.86618 -26.43374 -24.17514 -23.80072 -21.93272 -18.91728 -18.57065 -16.98631 -16.60964 -16.26930 -15.82653 -14.87104 -14.60877 -14.19685 -13.94824 -13.87605 -13.60134 -13.52052 -13.04226 -12.88117 -12.62173 -12.49287 -12.33757 -11.96770 -11.91870 -11.51690 -11.30294 -10.59730 -9.98814 -9.73735 -8.22320 -6.34699 -0.17905 0.16531 1.41263 1.41716 1.55581 2.40081 2.66394 3.09749 3.11473 3.23535 3.52162 3.81909 4.07451 4.26711 4.41786 4.55548 4.65716 4.72020 4.74788 4.83047 4.96813 5.03807 5.07792 5.19018 5.44005 5.57598 5.60652 5.77820 6.16575 6.38280 6.81423 6.88193 7.35249 8.90145 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.062321 B = 0.006383 C = 0.006238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.178665 B = 4385.395854 C = 4487.187096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.053 3.947 3 N -0.453 5.453 4 C 0.036 3.964 5 C 0.079 3.921 6 C -0.049 4.049 7 C 0.041 3.959 8 C -0.541 4.541 9 H 0.068 0.932 10 C -0.002 4.002 11 N -0.936 5.936 12 Si 0.971 3.029 13 H -0.258 1.258 14 H -0.277 1.277 15 H -0.280 1.280 16 N -0.469 5.469 17 C 0.069 3.931 18 C -0.098 4.098 19 H 0.092 0.908 20 H 0.080 0.920 21 H 0.111 0.889 22 H 0.178 0.822 23 H 0.090 0.910 24 H 0.068 0.932 25 H -0.019 1.019 26 H -0.004 1.004 27 H 0.264 0.736 28 H 0.091 0.909 29 H 0.116 0.884 30 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.354 -2.263 -8.371 15.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.089 4.089 3 N -0.168 5.168 4 C -0.123 4.123 5 C -0.060 4.060 6 C -0.088 4.088 7 C 0.003 3.997 8 C -0.578 4.578 9 H 0.087 0.913 10 C -0.199 4.199 11 N -0.577 5.577 12 Si 0.795 3.205 13 H -0.182 1.182 14 H -0.202 1.202 15 H -0.206 1.206 16 N -0.185 5.185 17 C -0.073 4.073 18 C -0.156 4.156 19 H 0.110 0.890 20 H 0.099 0.901 21 H 0.129 0.871 22 H 0.195 0.805 23 H 0.109 0.891 24 H 0.086 0.914 25 H -0.001 1.001 26 H 0.014 0.986 27 H 0.073 0.927 28 H 0.109 0.891 29 H 0.135 0.865 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.327 -2.228 -8.213 15.812 hybrid contribution 1.254 0.176 0.569 1.388 sum -12.073 -2.052 -7.644 14.436 Atomic orbital electron populations 1.20865 0.84532 1.05271 1.04496 1.22819 1.00375 0.88549 0.97116 1.68295 1.08588 1.30269 1.09664 1.23682 0.90719 0.99667 0.98239 1.22563 0.98783 0.89760 0.94913 1.20492 0.86143 1.02940 0.99234 1.18868 0.95365 0.94632 0.90820 1.21674 0.92396 1.50204 0.93575 0.91338 1.26038 1.04303 0.94520 0.95067 1.70126 1.37778 1.51217 0.98536 0.85310 0.78649 0.77745 0.78798 1.18160 1.20244 1.20568 1.68169 1.09560 1.30220 1.10576 1.22900 0.90018 0.98814 0.95538 1.20907 0.99988 0.90202 1.04456 0.88969 0.90075 0.87117 0.80462 0.89113 0.91380 1.00083 0.98598 0.92732 0.89080 0.86536 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.63 9.79 71.24 0.70 -0.93 16 2 C 0.05 1.53 6.79 42.54 0.29 1.82 16 3 N -0.45 -15.50 10.42 -183.29 -1.91 -17.41 16 4 C 0.04 1.31 10.90 84.69 0.92 2.23 16 5 C 0.08 3.18 6.04 42.55 0.26 3.44 16 6 C -0.05 -2.15 5.44 29.85 0.16 -1.99 16 7 C 0.04 2.23 4.95 29.85 0.15 2.38 16 8 C -0.54 -31.04 9.11 25.60 0.23 -30.81 16 9 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 10 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 11 N -0.94 -58.12 13.29 21.45 0.28 -57.84 16 12 Si 0.97 44.48 29.54 68.60 2.03 46.50 16 13 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 14 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 15 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 16 N -0.47 -18.38 10.35 -171.51 -1.77 -20.15 16 17 C 0.07 2.12 6.79 42.53 0.29 2.41 16 18 C -0.10 -1.95 9.79 71.24 0.70 -1.25 16 19 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 20 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 21 H 0.11 1.18 5.95 -2.39 -0.01 1.17 16 22 H 0.18 5.86 8.06 -2.92 -0.02 5.83 16 23 H 0.09 3.54 8.12 -2.39 -0.02 3.52 16 24 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 25 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 26 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 27 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 28 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 29 H 0.12 1.38 5.95 -2.38 -0.01 1.36 16 30 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -71.58 261.09 3.90 -67.67 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: 1.12 Total: 3.56 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: 4.16 Total: -22.34 kcal Atomic # 7 Polarization: -92.00 SS G_CDS: -3.40 Total: -95.40 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -71.58 3.90 -67.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259813639.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.896 kcal (2) G-P(sol) polarization free energy of solvation -71.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds