Wall clock time and date at job start Mon Mar 30 2020 02:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30404 * 125.64706 * 2 1 4 4 C 1.34494 * 109.30314 * 180.02562 * 3 2 1 5 5 C 1.34428 * 107.85813 * 359.97438 * 4 3 2 6 6 N 1.34995 * 125.64693 * 180.02562 * 2 1 3 7 7 C 1.46496 * 126.41979 * 0.02562 * 6 2 1 8 8 C 1.51181 * 110.53389 * 180.02562 * 5 4 3 9 9 H 1.09001 * 110.43764 * 257.92840 * 8 5 4 10 10 C 1.50694 * 110.35080 * 135.69883 * 8 5 4 11 11 H 1.08002 * 120.00179 * 3.03014 * 10 8 5 12 12 C 1.37879 * 120.00472 * 183.03331 * 10 8 5 13 13 N 1.31514 * 119.99350 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 120.00608 * 179.97438 * 12 10 8 15 15 H 1.48493 * 109.47326 * 270.00340 * 14 12 10 16 16 H 1.48506 * 109.46545 * 30.00090 * 14 12 10 17 17 H 1.48498 * 109.47210 * 149.99801 * 14 12 10 18 18 C 1.54487 * 104.93654 * 16.83321 * 8 5 4 19 19 C 1.51371 * 141.86398 * 180.02562 * 4 3 2 20 20 H 1.09001 * 109.47207 * 89.98050 * 1 2 3 21 21 H 1.09010 * 109.47076 * 209.97318 * 1 2 3 22 22 H 1.08993 * 109.47378 * 329.97219 * 1 2 3 23 23 H 1.08998 * 109.47622 * 89.96978 * 7 6 2 24 24 H 1.08995 * 109.47054 * 209.97459 * 7 6 2 25 25 H 1.09004 * 109.46983 * 329.97049 * 7 6 2 26 26 H 0.97005 * 119.99661 * 179.97438 * 13 12 10 27 27 H 1.09005 * 110.94442 * 92.62235 * 18 8 5 28 28 H 1.09000 * 110.94892 * 216.28878 * 18 8 5 29 29 H 1.08997 * 110.33993 * 44.25727 * 19 4 3 30 30 H 1.09002 * 110.42469 * 282.05974 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2670 1.0597 0.0000 4 6 3.5576 0.6812 -0.0006 5 6 3.5931 -0.6626 -0.0004 6 7 2.2937 -1.0970 -0.0005 7 6 1.8427 -2.4908 -0.0016 8 6 5.0224 -1.1553 -0.0003 9 1 5.3126 -1.4814 -0.9991 10 6 5.1883 -2.2819 0.9866 11 1 4.3329 -2.6526 1.5318 12 6 6.4322 -2.8394 1.1938 13 7 7.4738 -2.3883 0.5296 14 14 6.6381 -4.2355 2.4177 15 1 6.9394 -3.6765 3.7600 16 1 5.3832 -5.0269 2.4814 17 1 7.7552 -5.1128 1.9846 18 6 5.8645 0.0657 0.4317 19 6 4.9631 1.2432 -0.0005 20 1 -0.3634 0.0003 -1.0277 21 1 -0.3634 -0.8903 0.5135 22 1 -0.3634 0.8897 0.5142 23 1 1.7306 -2.8357 -1.0295 24 1 2.5775 -3.1109 0.5116 25 1 0.8841 -2.5629 0.5123 26 1 8.3490 -2.7802 0.6755 27 1 6.0197 0.0699 1.5106 28 1 6.8173 0.0889 -0.0972 29 1 5.0433 2.0630 0.7133 30 1 5.2369 1.5832 -0.9993 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259913442.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:48 Heat of formation + Delta-G solvation = 59.064774 kcal Electronic energy + Delta-G solvation = -13487.984528 eV Core-core repulsion = 11284.167279 eV Total energy + Delta-G solvation = -2203.817249 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.48006 -35.87326 -33.37730 -32.13750 -30.21689 -27.78041 -26.39926 -24.95141 -23.45987 -19.89897 -19.21426 -18.70006 -16.52994 -15.70499 -15.04054 -14.57686 -13.66409 -13.30425 -13.07149 -12.93338 -12.34933 -12.07695 -11.88100 -11.81163 -11.66580 -11.12332 -10.93410 -10.67002 -10.55875 -9.97027 -9.76250 -9.07303 -8.83337 -8.66924 -8.48043 -7.05845 -6.10406 -4.15962 2.89751 3.24024 3.31326 3.32618 3.45895 3.87722 4.35817 4.81206 5.20798 5.25760 5.29569 5.55777 5.63232 5.77311 5.86222 5.98017 6.08684 6.29224 6.39153 6.58122 6.86297 7.04637 7.09941 7.38338 7.51701 7.61792 7.73702 7.86330 8.09764 8.27560 8.81614 8.92724 9.48475 10.97281 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.038375 B = 0.011332 C = 0.009213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.463292 B = 2470.211506 C = 3038.434630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.165 3.835 3 N -0.481 5.481 4 C -0.059 4.059 5 C 0.008 3.992 6 N -0.442 5.442 7 C 0.074 3.926 8 C 0.123 3.877 9 H 0.044 0.956 10 C -0.518 4.518 11 H 0.053 0.947 12 C 0.066 3.934 13 N -0.885 5.885 14 Si 0.892 3.108 15 H -0.280 1.280 16 H -0.276 1.276 17 H -0.285 1.285 18 C -0.082 4.082 19 C -0.033 4.033 20 H 0.070 0.930 21 H 0.066 0.934 22 H 0.082 0.918 23 H 0.066 0.934 24 H 0.096 0.904 25 H 0.073 0.927 26 H 0.263 0.737 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.554 0.431 -1.020 8.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.094 4.094 3 N -0.201 5.201 4 C -0.186 4.186 5 C -0.108 4.108 6 N -0.126 5.126 7 C -0.069 4.069 8 C 0.103 3.897 9 H 0.062 0.938 10 C -0.556 4.556 11 H 0.071 0.929 12 C -0.136 4.136 13 N -0.523 5.523 14 Si 0.720 3.280 15 H -0.206 1.206 16 H -0.201 1.201 17 H -0.211 1.211 18 C -0.121 4.121 19 C -0.071 4.071 20 H 0.088 0.912 21 H 0.084 0.916 22 H 0.101 0.899 23 H 0.085 0.915 24 H 0.115 0.885 25 H 0.092 0.908 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.709 1.063 -1.048 8.836 hybrid contribution 0.328 -1.726 0.698 1.891 sum -8.381 -0.663 -0.350 8.414 Atomic orbital electron populations 1.19978 0.85783 1.03024 1.02463 1.22893 0.94915 0.81125 1.10513 1.69435 1.01566 1.28714 1.20379 1.21440 0.92630 0.93056 1.11432 1.22749 0.87781 0.96264 1.03968 1.44392 1.05680 1.06830 1.55684 1.21980 1.01317 0.80874 1.02762 1.17988 0.80112 0.93938 0.97624 0.93819 1.21003 0.93983 1.17194 1.23426 0.92854 1.24942 0.95914 0.96868 0.95895 1.69944 0.99568 1.41804 1.40944 0.86601 0.77745 0.82117 0.81582 1.20573 1.20070 1.21104 1.22278 0.97184 0.91727 1.00958 1.20530 0.87548 0.98745 1.00306 0.91155 0.91564 0.89944 0.91504 0.88539 0.90814 0.92748 0.91960 0.90620 0.92579 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.72 10.19 36.01 0.37 -0.36 16 2 C 0.17 3.24 7.90 -155.54 -1.23 2.01 16 3 N -0.48 -10.89 11.26 -6.87 -0.08 -10.97 16 4 C -0.06 -1.38 7.98 -82.44 -0.66 -2.04 16 5 C 0.01 0.20 6.90 -81.39 -0.56 -0.36 16 6 N -0.44 -9.07 3.15 -116.56 -0.37 -9.43 16 7 C 0.07 1.17 10.98 59.84 0.66 1.83 16 8 C 0.12 3.11 2.82 -91.91 -0.26 2.85 16 9 H 0.04 1.18 8.14 -51.93 -0.42 0.76 16 10 C -0.52 -13.81 8.29 -34.44 -0.29 -14.09 16 11 H 0.05 1.42 6.64 -52.49 -0.35 1.07 16 12 C 0.07 1.77 5.33 -17.82 -0.09 1.68 16 13 N -0.89 -24.35 12.34 55.43 0.68 -23.66 16 14 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 18 C -0.08 -1.94 5.67 -25.19 -0.14 -2.09 16 19 C -0.03 -0.70 6.79 -26.79 -0.18 -0.88 16 20 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 21 H 0.07 0.73 7.07 -51.92 -0.37 0.37 16 22 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 23 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.10 1.69 6.81 -51.93 -0.35 1.33 16 25 H 0.07 0.91 7.05 -51.93 -0.37 0.55 16 26 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 27 H 0.06 1.54 7.91 -51.93 -0.41 1.13 16 28 H 0.08 1.79 7.92 -51.93 -0.41 1.38 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 250.99 15.07 3.78 3.78 Total: -1.00 -30.76 250.99 -7.32 -38.07 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -3.93 Total: -1.93 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -2.39 Total: -11.45 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: 0.24 Total: -44.07 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.76 -7.32 -38.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259913442.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.139 kcal (2) G-P(sol) polarization free energy of solvation -30.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds