Wall clock time and date at job start Mon Mar 30 2020 01:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38880 * 120.74743 * 2 1 4 4 C 1.38021 * 119.33217 * 180.02562 * 3 2 1 5 5 N 1.31973 * 120.85712 * 359.71994 * 4 3 2 6 6 C 1.32402 * 121.61979 * 0.57281 * 5 4 3 7 7 N 1.38998 * 119.70489 * 179.71050 * 6 5 4 8 8 C 1.46506 * 119.99722 * 179.72309 * 7 6 5 9 9 H 1.09000 * 109.47212 * 324.99940 * 8 7 6 10 10 C 1.53002 * 109.47035 * 85.00175 * 8 7 6 11 11 C 1.50701 * 109.46956 * 204.99989 * 8 7 6 12 12 H 1.08001 * 120.00213 * 359.97438 * 11 8 7 13 13 C 1.37880 * 119.99755 * 180.02562 * 11 8 7 14 14 N 1.31508 * 119.99915 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 119.99825 * 179.97438 * 13 11 8 16 16 H 1.48503 * 109.47088 * 60.00147 * 15 13 11 17 17 H 1.48496 * 109.47117 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47600 * 300.00319 * 15 13 11 19 19 C 1.38306 * 120.74843 * 180.02562 * 2 1 3 20 20 H 1.09001 * 109.46585 * 269.97027 * 1 2 3 21 21 H 1.08998 * 109.47210 * 29.97532 * 1 2 3 22 22 H 1.09008 * 109.47011 * 149.97850 * 1 2 3 23 23 H 1.08000 * 120.33175 * 359.97438 * 3 2 1 24 24 H 1.08000 * 119.57183 * 180.02562 * 4 3 2 25 25 H 0.97000 * 120.00460 * 359.72211 * 7 6 5 26 26 H 1.08992 * 109.47060 * 179.97438 * 10 8 7 27 27 H 1.09004 * 109.46930 * 299.99770 * 10 8 7 28 28 H 1.09004 * 109.47059 * 59.99372 * 10 8 7 29 29 H 0.97003 * 119.99339 * 179.97438 * 14 13 11 30 30 H 1.08003 * 120.44977 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2170 1.1936 0.0000 4 6 3.5968 1.1595 -0.0005 5 7 4.2455 0.0102 0.0045 6 6 3.6049 -1.1485 -0.0011 7 7 4.3283 -2.3355 -0.0015 8 6 3.6259 -3.6212 -0.0015 9 1 2.7132 -3.5367 0.5883 10 6 3.2707 -4.0083 -1.4385 11 6 4.5155 -4.6794 0.5984 12 1 5.5051 -4.4203 0.9447 13 6 4.0663 -5.9787 0.7043 14 7 2.8614 -6.2943 0.2822 15 14 5.1692 -7.2906 1.4474 16 1 5.5141 -6.9154 2.8422 17 1 4.4573 -8.5938 1.4475 18 1 6.4127 -7.4053 0.6438 19 6 2.2141 -1.1886 -0.0005 20 1 -0.3632 -0.0005 1.0277 21 1 -0.3633 0.8902 -0.5134 22 1 -0.3633 -0.8899 -0.5142 23 1 1.6947 2.1389 -0.0004 24 1 4.1529 2.0854 -0.0001 25 1 5.2980 -2.3125 -0.0019 26 1 2.7486 -4.9650 -1.4386 27 1 2.6273 -3.2428 -1.8725 28 1 4.1835 -4.0927 -2.0283 29 1 2.5456 -7.2085 0.3565 30 1 1.6938 -2.1350 -0.0005 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259960501.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:49 Heat of formation + Delta-G solvation = 25.604085 kcal Electronic energy + Delta-G solvation = -13024.102830 eV Core-core repulsion = 10818.834617 eV Total energy + Delta-G solvation = -2205.268214 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.59748 -35.88201 -33.49954 -32.59569 -29.84424 -27.72537 -27.33358 -25.27897 -22.79963 -21.25714 -20.14524 -17.16700 -16.05962 -15.71666 -15.15269 -14.67272 -13.98551 -13.82514 -13.45973 -12.78603 -12.54224 -12.19275 -11.98015 -11.83878 -11.25741 -11.17077 -11.02883 -10.75318 -10.33581 -10.23238 -9.42891 -9.12192 -8.89279 -8.83127 -8.52888 -6.80766 -6.19726 -4.27658 1.88222 2.06939 3.23837 3.28338 3.30857 4.11280 4.38076 4.52899 5.12828 5.14165 5.17941 5.56083 5.72329 5.79304 5.87117 5.95912 6.20876 6.39053 6.55732 6.65257 6.88283 6.92920 7.00275 7.19072 7.42621 7.63566 7.76907 7.95465 8.10504 8.65854 8.71184 9.00942 9.40051 10.86491 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.050402 B = 0.007958 C = 0.007313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.402013 B = 3517.729257 C = 3827.823454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.009 4.009 3 C -0.264 4.264 4 C 0.147 3.853 5 N -0.567 5.567 6 C 0.416 3.584 7 N -0.700 5.700 8 C 0.270 3.730 9 H 0.042 0.958 10 C -0.153 4.153 11 C -0.532 4.532 12 H 0.062 0.938 13 C 0.067 3.933 14 N -0.887 5.887 15 Si 0.904 3.096 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.275 1.275 19 C -0.242 4.242 20 H 0.071 0.929 21 H 0.065 0.935 22 H 0.068 0.932 23 H 0.118 0.882 24 H 0.144 0.856 25 H 0.395 0.605 26 H 0.092 0.908 27 H 0.013 0.987 28 H 0.030 0.970 29 H 0.266 0.734 30 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.127 9.191 -0.916 9.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.016 4.016 3 C -0.288 4.288 4 C -0.011 4.011 5 N -0.287 5.287 6 C 0.177 3.823 7 N -0.325 5.325 8 C 0.168 3.832 9 H 0.060 0.940 10 C -0.212 4.212 11 C -0.570 4.570 12 H 0.080 0.920 13 C -0.136 4.136 14 N -0.525 5.525 15 Si 0.731 3.269 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.201 1.201 19 C -0.268 4.268 20 H 0.090 0.910 21 H 0.083 0.917 22 H 0.087 0.913 23 H 0.136 0.864 24 H 0.161 0.839 25 H 0.229 0.771 26 H 0.110 0.890 27 H 0.032 0.968 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.465 8.746 -0.924 9.133 hybrid contribution 0.035 -0.713 0.363 0.801 sum -2.429 8.032 -0.560 8.410 Atomic orbital electron populations 1.20775 0.91242 1.02609 1.02321 1.19967 0.95800 0.92680 0.93174 1.21426 0.95346 0.97703 1.14374 1.22181 0.91516 0.94729 0.92708 1.67225 1.40896 0.97525 1.23055 1.18631 0.88683 0.86641 0.88354 1.45477 1.08681 1.02857 1.75521 1.18801 0.93143 0.77702 0.93567 0.94039 1.22198 0.99404 1.02014 0.97570 1.21168 1.01516 0.93072 1.41262 0.91966 1.24865 0.95296 0.98371 0.95080 1.69861 1.16902 1.19685 1.46033 0.86466 0.80395 0.80317 0.79730 1.20120 1.21067 1.20081 1.21416 0.93445 0.99096 1.12839 0.91017 0.91651 0.91291 0.86355 0.83913 0.77146 0.88961 0.96787 0.95044 0.92454 0.84796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 10.06 36.01 0.36 -1.08 16 2 C -0.01 -0.14 5.91 -104.36 -0.62 -0.76 16 3 C -0.26 -4.05 9.81 -39.42 -0.39 -4.44 16 4 C 0.15 2.42 11.17 -17.57 -0.20 2.22 16 5 N -0.57 -11.27 10.39 -12.44 -0.13 -11.40 16 6 C 0.42 8.81 7.63 -155.02 -1.18 7.63 16 7 N -0.70 -15.67 5.24 -55.05 -0.29 -15.96 16 8 C 0.27 6.66 2.25 -69.08 -0.16 6.51 16 9 H 0.04 1.10 6.45 -51.93 -0.33 0.77 16 10 C -0.15 -3.65 9.18 37.16 0.34 -3.31 16 11 C -0.53 -14.13 8.73 -34.44 -0.30 -14.43 16 12 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 13 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 14 N -0.89 -24.18 11.32 55.43 0.63 -23.55 16 15 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 19 C -0.24 -4.79 8.53 -39.22 -0.33 -5.12 16 20 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 21 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 22 H 0.07 0.87 8.10 -51.92 -0.42 0.45 16 23 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 24 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 25 H 0.39 8.58 8.66 -40.82 -0.35 8.23 16 26 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 27 H 0.01 0.30 7.66 -51.93 -0.40 -0.10 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.13 2.75 6.07 -52.48 -0.32 2.44 16 LS Contribution 255.95 15.07 3.86 3.86 Total: -1.00 -27.94 255.95 -7.31 -35.25 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -3.79 Total: 7.30 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -2.56 Total: -11.10 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: 0.21 Total: -50.92 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -27.94 -7.31 -35.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259960501.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.855 kcal (2) G-P(sol) polarization free energy of solvation -27.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds