Wall clock time and date at job start Mon Mar 30 2020 01:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38880 * 120.74743 * 2 1 4 4 C 1.38021 * 119.33217 * 180.02562 * 3 2 1 5 5 N 1.31973 * 120.85712 * 359.71994 * 4 3 2 6 6 C 1.32402 * 121.61979 * 0.57281 * 5 4 3 7 7 N 1.38998 * 119.70489 * 179.71050 * 6 5 4 8 8 C 1.46506 * 119.99722 * 179.72309 * 7 6 5 9 9 H 1.09000 * 109.47212 * 324.99940 * 8 7 6 10 10 C 1.53002 * 109.47035 * 85.00175 * 8 7 6 11 11 C 1.50701 * 109.46956 * 204.99989 * 8 7 6 12 12 H 1.08001 * 120.00213 * 359.97438 * 11 8 7 13 13 C 1.37880 * 119.99755 * 180.02562 * 11 8 7 14 14 N 1.31508 * 119.99915 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 119.99825 * 179.97438 * 13 11 8 16 16 H 1.48503 * 109.47088 * 60.00147 * 15 13 11 17 17 H 1.48496 * 109.47117 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47600 * 300.00319 * 15 13 11 19 19 C 1.38306 * 120.74843 * 180.02562 * 2 1 3 20 20 H 1.09001 * 109.46585 * 269.97027 * 1 2 3 21 21 H 1.08998 * 109.47210 * 29.97532 * 1 2 3 22 22 H 1.09008 * 109.47011 * 149.97850 * 1 2 3 23 23 H 1.08000 * 120.33175 * 359.97438 * 3 2 1 24 24 H 1.08000 * 119.57183 * 180.02562 * 4 3 2 25 25 H 0.97000 * 120.00460 * 359.72211 * 7 6 5 26 26 H 1.08992 * 109.47060 * 179.97438 * 10 8 7 27 27 H 1.09004 * 109.46930 * 299.99770 * 10 8 7 28 28 H 1.09004 * 109.47059 * 59.99372 * 10 8 7 29 29 H 0.97003 * 119.99339 * 179.97438 * 14 13 11 30 30 H 1.08003 * 120.44977 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2170 1.1936 0.0000 4 6 3.5968 1.1595 -0.0005 5 7 4.2455 0.0102 0.0045 6 6 3.6049 -1.1485 -0.0011 7 7 4.3283 -2.3355 -0.0015 8 6 3.6259 -3.6212 -0.0015 9 1 2.7132 -3.5367 0.5883 10 6 3.2707 -4.0083 -1.4385 11 6 4.5155 -4.6794 0.5984 12 1 5.5051 -4.4203 0.9447 13 6 4.0663 -5.9787 0.7043 14 7 2.8614 -6.2943 0.2822 15 14 5.1692 -7.2906 1.4474 16 1 5.5141 -6.9154 2.8422 17 1 4.4573 -8.5938 1.4475 18 1 6.4127 -7.4053 0.6438 19 6 2.2141 -1.1886 -0.0005 20 1 -0.3632 -0.0005 1.0277 21 1 -0.3633 0.8902 -0.5134 22 1 -0.3633 -0.8899 -0.5142 23 1 1.6947 2.1389 -0.0004 24 1 4.1529 2.0854 -0.0001 25 1 5.2980 -2.3125 -0.0019 26 1 2.7486 -4.9650 -1.4386 27 1 2.6273 -3.2428 -1.8725 28 1 4.1835 -4.0927 -2.0283 29 1 2.5456 -7.2085 0.3565 30 1 1.6938 -2.1350 -0.0005 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259960501.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:48 Heat of formation + Delta-G solvation = 9.016613 kcal Electronic energy + Delta-G solvation = -13024.822117 eV Core-core repulsion = 10818.834617 eV Total energy + Delta-G solvation = -2205.987500 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.02980 -37.62118 -34.99985 -34.31340 -31.54569 -29.37035 -28.54192 -27.30275 -24.30816 -22.73814 -21.87137 -18.95504 -17.58270 -17.45074 -16.75620 -16.27447 -15.48429 -15.25227 -15.11624 -14.27659 -14.07417 -13.62137 -13.43191 -13.21877 -13.03657 -12.91084 -12.77073 -12.39800 -12.24758 -12.04474 -11.17739 -10.93417 -10.53635 -10.27164 -10.25462 -8.40861 -8.20826 -6.37331 0.50756 0.68259 1.42374 1.43418 1.51488 2.33114 2.64321 3.07064 3.12957 3.83957 4.00619 4.28374 4.46847 4.54973 4.67350 4.79878 4.84792 4.89593 4.98621 5.04227 5.18403 5.24606 5.36767 5.57250 5.66210 5.77601 5.97979 6.05525 6.31208 6.70691 7.02696 7.29784 7.48131 8.83742 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.050402 B = 0.007958 C = 0.007313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.402013 B = 3517.729257 C = 3827.823454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.008 4.008 3 C -0.248 4.248 4 C 0.139 3.861 5 N -0.587 5.587 6 C 0.390 3.610 7 N -0.712 5.712 8 C 0.282 3.718 9 H 0.015 0.985 10 C -0.138 4.138 11 C -0.554 4.554 12 H 0.059 0.941 13 C 0.022 3.978 14 N -0.911 5.911 15 Si 0.967 3.033 16 H -0.273 1.273 17 H -0.279 1.279 18 H -0.270 1.270 19 C -0.270 4.270 20 H 0.085 0.915 21 H 0.095 0.905 22 H 0.064 0.936 23 H 0.162 0.838 24 H 0.183 0.817 25 H 0.393 0.607 26 H 0.072 0.928 27 H 0.023 0.977 28 H 0.028 0.972 29 H 0.268 0.732 30 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.480 10.921 -0.744 11.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.016 4.016 3 C -0.271 4.271 4 C -0.019 4.019 5 N -0.307 5.307 6 C 0.154 3.846 7 N -0.339 5.339 8 C 0.178 3.822 9 H 0.033 0.967 10 C -0.197 4.197 11 C -0.592 4.592 12 H 0.078 0.922 13 C -0.178 4.178 14 N -0.549 5.549 15 Si 0.792 3.208 16 H -0.199 1.199 17 H -0.204 1.204 18 H -0.195 1.195 19 C -0.295 4.295 20 H 0.103 0.897 21 H 0.114 0.886 22 H 0.083 0.917 23 H 0.180 0.820 24 H 0.200 0.800 25 H 0.227 0.773 26 H 0.091 0.909 27 H 0.042 0.958 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.831 10.521 -0.756 10.921 hybrid contribution 0.069 -1.060 0.309 1.106 sum -2.762 9.461 -0.446 9.866 Atomic orbital electron populations 1.20863 0.88433 1.03920 1.03542 1.20466 0.97911 0.91939 0.91279 1.21921 0.95061 0.98861 1.11297 1.22949 0.92733 0.94845 0.91367 1.67231 1.41815 0.98025 1.23605 1.18793 0.89206 0.86725 0.89897 1.45180 1.08404 1.02764 1.77557 1.18436 0.91987 0.78622 0.93122 0.96712 1.22000 0.99062 1.01170 0.97446 1.21481 1.01768 0.94095 1.41837 0.92237 1.25652 0.96578 1.00264 0.95342 1.69973 1.18173 1.20171 1.46586 0.85474 0.78731 0.77755 0.78858 1.19872 1.20412 1.19484 1.21429 0.93188 0.99789 1.15123 0.89673 0.88638 0.91734 0.82048 0.80023 0.77313 0.90886 0.95825 0.95297 0.92284 0.86861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.52 10.06 71.24 0.72 -1.80 16 2 C -0.01 -0.25 5.91 -19.69 -0.12 -0.37 16 3 C -0.25 -6.66 9.81 22.37 0.22 -6.45 16 4 C 0.14 4.15 11.17 84.62 0.95 5.09 16 5 N -0.59 -22.86 10.39 -193.26 -2.01 -24.87 16 6 C 0.39 16.78 7.63 133.06 1.02 17.80 16 7 N -0.71 -33.03 5.24 -328.09 -1.72 -34.75 16 8 C 0.28 14.47 2.25 44.25 0.10 14.57 16 9 H 0.02 0.85 6.45 -2.39 -0.02 0.83 16 10 C -0.14 -6.81 9.18 71.98 0.66 -6.15 16 11 C -0.55 -30.20 8.73 25.60 0.22 -29.98 16 12 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 13 C 0.02 1.20 5.30 84.66 0.45 1.65 16 14 N -0.91 -50.65 11.32 21.45 0.24 -50.41 16 15 Si 0.97 42.54 29.54 68.60 2.03 44.56 16 16 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 17 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 18 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 19 C -0.27 -10.78 8.53 22.50 0.19 -10.59 16 20 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 21 H 0.09 1.61 8.10 -2.39 -0.02 1.59 16 22 H 0.06 1.53 8.10 -2.38 -0.02 1.51 16 23 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 24 H 0.18 3.88 8.06 -2.91 -0.02 3.86 16 25 H 0.39 17.77 8.66 -92.71 -0.80 16.97 16 26 H 0.07 3.88 6.07 -2.39 -0.01 3.86 16 27 H 0.02 1.06 7.66 -2.38 -0.02 1.04 16 28 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.27 14.09 8.31 -92.71 -0.77 13.31 16 30 H 0.11 4.91 6.07 -2.91 -0.02 4.89 16 Total: -1.00 -61.08 255.95 3.28 -57.80 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: 0.33 Total: 23.87 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: 4.41 Total: -16.22 kcal Atomic # 7 Polarization: -106.53 SS G_CDS: -3.48 Total: -110.02 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Total: -61.08 3.28 -57.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259960501.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.815 kcal (2) G-P(sol) polarization free energy of solvation -61.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds