Wall clock time and date at job start Mon Mar 30 2020 02:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31892 * 119.61640 * 2 1 4 4 C 1.31858 * 121.72661 * 180.02562 * 3 2 1 5 5 C 1.38232 * 120.75855 * 359.97438 * 4 3 2 6 6 C 1.38624 * 119.16504 * 0.02562 * 5 4 3 7 7 C 1.50694 * 120.78743 * 179.97438 * 6 5 4 8 8 H 1.09009 * 109.46968 * 220.00008 * 7 6 5 9 9 N 1.46897 * 109.47681 * 339.99633 * 7 6 5 10 10 C 1.50697 * 109.47517 * 99.99936 * 7 6 5 11 11 H 1.08003 * 119.99539 * 335.30400 * 10 7 6 12 12 C 1.37869 * 120.00660 * 155.30285 * 10 7 6 13 13 N 1.31523 * 119.99851 * 7.59327 * 12 10 7 14 14 Si 1.86798 * 120.00632 * 187.59201 * 12 10 7 15 15 H 1.48498 * 109.47573 * 179.97438 * 14 12 10 16 16 H 1.48499 * 109.47304 * 300.00227 * 14 12 10 17 17 H 1.48509 * 109.46825 * 60.00068 * 14 12 10 18 18 C 1.38179 * 119.61994 * 180.28685 * 2 1 3 19 19 C 1.50706 * 120.41713 * 359.97438 * 18 2 1 20 20 H 1.08995 * 109.47203 * 89.99487 * 1 2 3 21 21 H 1.08999 * 109.46992 * 209.99793 * 1 2 3 22 22 H 1.09005 * 109.46786 * 329.99401 * 1 2 3 23 23 H 1.07993 * 119.61903 * 180.02562 * 4 3 2 24 24 H 1.08001 * 120.41396 * 180.02562 * 5 4 3 25 25 H 1.00905 * 110.99840 * 66.76806 * 9 7 6 26 26 H 1.00899 * 111.00679 * 190.72274 * 9 7 6 27 27 H 0.96994 * 119.99617 * 355.39489 * 13 12 10 28 28 H 1.08990 * 109.46780 * 270.27591 * 19 18 2 29 29 H 1.08999 * 109.46933 * 30.27538 * 19 18 2 30 30 H 1.09000 * 109.46786 * 150.27325 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1466 0.0000 4 6 3.4764 1.1952 -0.0005 5 6 4.2267 0.0341 -0.0005 6 6 3.5766 -1.1902 -0.0005 7 6 4.3583 -2.4786 -0.0011 8 1 3.8734 -3.1975 -0.6617 9 7 5.7247 -2.2222 -0.4754 10 6 4.4085 -3.0364 1.3979 11 1 4.2980 -2.3772 2.2463 12 6 4.5955 -4.3881 1.5949 13 7 4.8786 -5.1684 0.5747 14 14 4.4468 -5.1114 3.3107 15 1 4.6903 -6.5751 3.2538 16 1 5.4489 -4.4767 4.2041 17 1 3.0820 -4.8574 3.8384 18 6 2.1899 -1.2012 -0.0060 19 6 1.4372 -2.5068 -0.0120 20 1 -0.3633 0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5140 23 1 3.9752 2.1530 -0.0001 24 1 5.3057 0.0804 -0.0005 25 1 6.2324 -1.6457 0.1790 26 1 6.2146 -3.0865 -0.6515 27 1 4.8901 -4.8055 -0.3248 28 1 1.2519 -2.8240 1.0142 29 1 0.4867 -2.3758 -0.5291 30 1 2.0287 -3.2648 -0.5254 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260014200.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:53 Heat of formation + Delta-G solvation = 13.723646 kcal Electronic energy + Delta-G solvation = -13402.836598 eV Core-core repulsion = 11197.053210 eV Total energy + Delta-G solvation = -2205.783388 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.79682 -35.59419 -33.21931 -32.30010 -30.55978 -27.73860 -26.48833 -25.53770 -23.07571 -21.12744 -19.84422 -17.11192 -16.29371 -15.83737 -14.31471 -14.10735 -13.99093 -13.85621 -12.91832 -12.67448 -12.60532 -12.34701 -12.19358 -11.92465 -11.86601 -11.39584 -10.92339 -10.65326 -10.29015 -10.07766 -9.61980 -8.88698 -8.74594 -8.48852 -8.10189 -7.44303 -6.56110 -4.35818 1.77714 2.08403 3.31155 3.33066 3.51615 4.31895 4.46859 4.85920 5.10731 5.28846 5.49170 5.65796 5.69202 5.86012 5.87244 6.05203 6.11990 6.18189 6.32824 6.37133 6.48057 6.71992 6.83060 6.92397 7.33510 7.47562 7.77559 8.12596 8.35574 8.54301 8.60473 8.63217 9.36062 10.76526 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.035712 B = 0.011030 C = 0.009720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.853157 B = 2537.835959 C = 2879.904070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.108 3.892 3 N -0.505 5.505 4 C 0.079 3.921 5 C -0.169 4.169 6 C 0.015 3.985 7 C 0.221 3.779 8 H 0.058 0.942 9 N -0.855 5.855 10 C -0.619 4.619 11 H 0.049 0.951 12 C 0.031 3.969 13 N -0.902 5.902 14 Si 1.066 2.934 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.286 1.286 18 C -0.133 4.133 19 C -0.100 4.100 20 H 0.069 0.931 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.143 0.857 24 H 0.130 0.870 25 H 0.324 0.676 26 H 0.333 0.667 27 H 0.270 0.730 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.576 5.935 -0.462 7.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.029 4.029 3 N -0.215 5.215 4 C -0.077 4.077 5 C -0.189 4.189 6 C 0.007 3.993 7 C 0.113 3.887 8 H 0.076 0.924 9 N -0.382 5.382 10 C -0.659 4.659 11 H 0.067 0.933 12 C -0.176 4.176 13 N -0.537 5.537 14 Si 0.894 3.106 15 H -0.206 1.206 16 H -0.214 1.214 17 H -0.212 1.212 18 C -0.136 4.136 19 C -0.157 4.157 20 H 0.088 0.912 21 H 0.091 0.909 22 H 0.087 0.913 23 H 0.161 0.839 24 H 0.148 0.852 25 H 0.134 0.866 26 H 0.145 0.855 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.258 5.667 -0.249 7.734 hybrid contribution 0.784 0.220 0.113 0.822 sum -4.474 5.886 -0.136 7.395 Atomic orbital electron populations 1.20630 0.89854 1.02754 1.02226 1.20933 0.96255 0.88157 0.97556 1.67353 1.10069 1.29197 1.14889 1.22477 0.89565 0.97906 0.97751 1.21894 1.01342 0.92700 1.02990 1.20598 0.92866 0.96517 0.89340 1.18192 0.86448 0.88665 0.95440 0.92406 1.59545 1.05550 1.21935 1.51181 1.22390 1.56178 0.95412 0.91942 0.93284 1.25877 0.92518 0.93643 1.05538 1.70872 1.42984 1.39663 1.00220 0.83569 0.76774 0.76326 0.73949 1.20617 1.21398 1.21199 1.20477 0.94185 0.96062 1.02852 1.20642 0.98417 0.94126 1.02529 0.91224 0.90900 0.91252 0.83933 0.85247 0.86574 0.85536 0.91841 0.90945 0.92631 0.91094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.42 9.36 36.00 0.34 -1.08 16 2 C 0.11 2.05 6.78 -82.59 -0.56 1.49 16 3 N -0.50 -9.79 10.27 -9.47 -0.10 -9.89 16 4 C 0.08 1.47 11.18 -17.54 -0.20 1.27 16 5 C -0.17 -3.38 9.34 -39.44 -0.37 -3.75 16 6 C 0.02 0.34 5.09 -104.32 -0.53 -0.20 16 7 C 0.22 5.27 2.04 -70.02 -0.14 5.13 16 8 H 0.06 1.49 5.43 -51.92 -0.28 1.21 16 9 N -0.85 -18.78 8.55 -6.65 -0.06 -18.83 16 10 C -0.62 -16.15 8.38 -34.44 -0.29 -16.44 16 11 H 0.05 1.34 7.82 -52.48 -0.41 0.93 16 12 C 0.03 0.81 5.44 -17.82 -0.10 0.71 16 13 N -0.90 -25.01 13.63 55.43 0.76 -24.26 16 14 Si 1.07 23.95 29.91 -169.99 -5.08 18.86 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 18 C -0.13 -2.73 5.90 -104.48 -0.62 -3.35 16 19 C -0.10 -1.87 8.70 36.01 0.31 -1.56 16 20 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 21 H 0.07 0.97 6.71 -51.93 -0.35 0.62 16 22 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 23 H 0.14 2.13 8.06 -52.49 -0.42 1.71 16 24 H 0.13 2.42 6.57 -52.49 -0.34 2.08 16 25 H 0.32 6.82 7.71 -39.29 -0.30 6.52 16 26 H 0.33 7.51 8.42 -39.29 -0.33 7.18 16 27 H 0.27 7.42 6.21 -40.82 -0.25 7.17 16 28 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.05 0.85 6.73 -51.93 -0.35 0.50 16 30 H 0.07 1.45 6.26 -51.93 -0.32 1.13 16 LS Contribution 250.25 15.07 3.77 3.77 Total: -1.00 -28.44 250.25 -6.30 -34.74 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -3.43 Total: 13.38 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: -2.15 Total: -17.77 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: 0.60 Total: -52.98 kcal Atomic # 14 Polarization: 23.95 SS G_CDS: -5.08 Total: 18.86 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -28.44 -6.30 -34.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260014200.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.461 kcal (2) G-P(sol) polarization free energy of solvation -28.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds