Wall clock time and date at job start Mon Mar 30 2020 02:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31892 * 119.61640 * 2 1 4 4 C 1.31858 * 121.72661 * 180.02562 * 3 2 1 5 5 C 1.38232 * 120.75855 * 359.97438 * 4 3 2 6 6 C 1.38624 * 119.16504 * 0.02562 * 5 4 3 7 7 C 1.50694 * 120.78743 * 179.97438 * 6 5 4 8 8 H 1.09009 * 109.46968 * 220.00008 * 7 6 5 9 9 N 1.46897 * 109.47681 * 339.99633 * 7 6 5 10 10 C 1.50697 * 109.47517 * 99.99936 * 7 6 5 11 11 H 1.08003 * 119.99539 * 335.30400 * 10 7 6 12 12 C 1.37869 * 120.00660 * 155.30285 * 10 7 6 13 13 N 1.31523 * 119.99851 * 7.59327 * 12 10 7 14 14 Si 1.86798 * 120.00632 * 187.59201 * 12 10 7 15 15 H 1.48498 * 109.47573 * 179.97438 * 14 12 10 16 16 H 1.48499 * 109.47304 * 300.00227 * 14 12 10 17 17 H 1.48509 * 109.46825 * 60.00068 * 14 12 10 18 18 C 1.38179 * 119.61994 * 180.28685 * 2 1 3 19 19 C 1.50706 * 120.41713 * 359.97438 * 18 2 1 20 20 H 1.08995 * 109.47203 * 89.99487 * 1 2 3 21 21 H 1.08999 * 109.46992 * 209.99793 * 1 2 3 22 22 H 1.09005 * 109.46786 * 329.99401 * 1 2 3 23 23 H 1.07993 * 119.61903 * 180.02562 * 4 3 2 24 24 H 1.08001 * 120.41396 * 180.02562 * 5 4 3 25 25 H 1.00905 * 110.99840 * 66.76806 * 9 7 6 26 26 H 1.00899 * 111.00679 * 190.72274 * 9 7 6 27 27 H 0.96994 * 119.99617 * 355.39489 * 13 12 10 28 28 H 1.08990 * 109.46780 * 270.27591 * 19 18 2 29 29 H 1.08999 * 109.46933 * 30.27538 * 19 18 2 30 30 H 1.09000 * 109.46786 * 150.27325 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1466 0.0000 4 6 3.4764 1.1952 -0.0005 5 6 4.2267 0.0341 -0.0005 6 6 3.5766 -1.1902 -0.0005 7 6 4.3583 -2.4786 -0.0011 8 1 3.8734 -3.1975 -0.6617 9 7 5.7247 -2.2222 -0.4754 10 6 4.4085 -3.0364 1.3979 11 1 4.2980 -2.3772 2.2463 12 6 4.5955 -4.3881 1.5949 13 7 4.8786 -5.1684 0.5747 14 14 4.4468 -5.1114 3.3107 15 1 4.6903 -6.5751 3.2538 16 1 5.4489 -4.4767 4.2041 17 1 3.0820 -4.8574 3.8384 18 6 2.1899 -1.2012 -0.0060 19 6 1.4372 -2.5068 -0.0120 20 1 -0.3633 0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5140 23 1 3.9752 2.1530 -0.0001 24 1 5.3057 0.0804 -0.0005 25 1 6.2324 -1.6457 0.1790 26 1 6.2146 -3.0865 -0.6515 27 1 4.8901 -4.8055 -0.3248 28 1 1.2519 -2.8240 1.0142 29 1 0.4867 -2.3758 -0.5291 30 1 2.0287 -3.2648 -0.5254 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260014200.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:52 Heat of formation + Delta-G solvation = -5.187478 kcal Electronic energy + Delta-G solvation = -13403.656646 eV Core-core repulsion = 11197.053210 eV Total energy + Delta-G solvation = -2206.603436 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.31406 -37.40344 -34.67097 -34.12994 -32.26758 -29.12697 -28.13547 -27.29309 -24.89044 -22.62919 -21.50058 -19.07147 -17.92275 -17.40093 -15.94200 -15.76263 -15.52310 -15.50313 -14.69715 -14.44902 -14.02772 -13.96278 -13.68853 -13.48847 -13.19090 -12.80902 -12.68361 -12.15580 -12.04054 -11.87795 -11.54972 -10.81457 -10.30978 -10.18420 -9.58200 -9.35276 -8.63016 -6.46259 0.28375 0.49429 1.49916 1.54159 1.74909 2.48104 2.92862 3.08600 3.52275 3.77201 4.02305 4.14342 4.19139 4.31074 4.63085 4.65577 4.73859 4.78874 4.82966 4.93135 4.98145 5.13469 5.27949 5.38854 5.68869 5.80599 5.95532 6.02068 6.47738 6.48992 6.75908 7.11525 7.31670 8.66512 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.035712 B = 0.011030 C = 0.009720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.853157 B = 2537.835959 C = 2879.904070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.107 3.893 3 N -0.512 5.512 4 C 0.084 3.916 5 C -0.180 4.180 6 C -0.016 4.016 7 C 0.228 3.772 8 H 0.032 0.968 9 N -0.843 5.843 10 C -0.620 4.620 11 H 0.033 0.967 12 C -0.010 4.010 13 N -0.923 5.923 14 Si 1.106 2.894 15 H -0.283 1.283 16 H -0.276 1.276 17 H -0.273 1.273 18 C -0.153 4.153 19 C -0.093 4.093 20 H 0.089 0.911 21 H 0.085 0.915 22 H 0.080 0.920 23 H 0.180 0.820 24 H 0.137 0.863 25 H 0.330 0.670 26 H 0.328 0.672 27 H 0.261 0.739 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.576 7.149 0.058 9.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.030 4.030 3 N -0.223 5.223 4 C -0.072 4.072 5 C -0.200 4.200 6 C -0.024 4.024 7 C 0.118 3.882 8 H 0.050 0.950 9 N -0.370 5.370 10 C -0.660 4.660 11 H 0.052 0.948 12 C -0.211 4.211 13 N -0.560 5.560 14 Si 0.929 3.071 15 H -0.208 1.208 16 H -0.202 1.202 17 H -0.199 1.199 18 C -0.156 4.156 19 C -0.150 4.150 20 H 0.108 0.892 21 H 0.104 0.896 22 H 0.099 0.901 23 H 0.197 0.803 24 H 0.154 0.846 25 H 0.141 0.859 26 H 0.139 0.861 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.257 6.903 0.265 9.321 hybrid contribution 1.087 -0.070 -0.090 1.093 sum -5.171 6.833 0.175 8.571 Atomic orbital electron populations 1.20747 0.86690 1.03998 1.03847 1.21560 0.98368 0.87313 0.95800 1.67506 1.10449 1.29288 1.15034 1.23021 0.89437 0.98815 0.95925 1.22039 1.01916 0.92638 1.03393 1.20635 0.93875 0.96336 0.91578 1.17977 0.87114 0.89374 0.93712 0.95018 1.59491 1.04941 1.21578 1.51021 1.22511 1.55584 0.95332 0.92591 0.94845 1.27021 0.91883 0.94336 1.07901 1.70967 1.44819 1.39935 1.00230 0.83041 0.77623 0.75609 0.70809 1.20799 1.20182 1.19868 1.20738 0.93897 0.97412 1.03512 1.20584 0.99481 0.92769 1.02128 0.89242 0.89607 0.90098 0.80325 0.84563 0.85912 0.86094 0.92803 0.91690 0.89084 0.93741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.47 9.36 71.23 0.67 -1.81 16 2 C 0.11 3.81 6.78 42.53 0.29 4.10 16 3 N -0.51 -18.60 10.27 -183.89 -1.89 -20.49 16 4 C 0.08 2.91 11.18 84.69 0.95 3.86 16 5 C -0.18 -7.01 9.34 22.36 0.21 -6.80 16 6 C -0.02 -0.70 5.09 -19.67 -0.10 -0.80 16 7 C 0.23 11.05 2.04 43.42 0.09 11.14 16 8 H 0.03 1.71 5.43 -2.38 -0.01 1.70 16 9 N -0.84 -37.54 8.55 -174.96 -1.50 -39.04 16 10 C -0.62 -32.75 8.38 25.60 0.21 -32.54 16 11 H 0.03 1.84 7.82 -2.91 -0.02 1.81 16 12 C -0.01 -0.54 5.44 84.65 0.46 -0.07 16 13 N -0.92 -52.04 13.63 21.45 0.29 -51.75 16 14 Si 1.11 48.03 29.91 68.60 2.05 50.08 16 15 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 16 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 17 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 18 C -0.15 -6.16 5.90 -19.77 -0.12 -6.28 16 19 C -0.09 -3.42 8.70 71.24 0.62 -2.80 16 20 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 21 H 0.09 1.99 6.71 -2.39 -0.02 1.98 16 22 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 23 H 0.18 4.74 8.06 -2.91 -0.02 4.71 16 24 H 0.14 4.98 6.57 -2.91 -0.02 4.96 16 25 H 0.33 13.93 7.71 -89.69 -0.69 13.24 16 26 H 0.33 15.13 8.42 -89.69 -0.76 14.37 16 27 H 0.26 14.80 6.21 -92.71 -0.58 14.23 16 28 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.09 2.62 6.73 -2.39 -0.02 2.60 16 30 H 0.04 1.86 6.26 -2.39 -0.01 1.84 16 Total: -1.00 -60.41 250.25 2.15 -58.26 By element: Atomic # 1 Polarization: 35.03 SS G_CDS: -0.08 Total: 34.94 kcal Atomic # 6 Polarization: -35.29 SS G_CDS: 3.28 Total: -32.01 kcal Atomic # 7 Polarization: -108.18 SS G_CDS: -3.09 Total: -111.28 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 2.05 Total: 50.08 kcal Total: -60.41 2.15 -58.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260014200.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.068 kcal (2) G-P(sol) polarization free energy of solvation -60.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds