Wall clock time and date at job start Mon Mar 30 2020 02:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.50699 * 109.47078 * 184.99974 * 3 2 1 6 6 H 1.08000 * 119.99792 * 239.99917 * 5 3 2 7 7 C 1.37878 * 119.99902 * 59.99463 * 5 3 2 8 8 N 1.31515 * 120.00126 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99745 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47438 * 0.02562 * 9 7 5 11 11 H 1.48491 * 109.47045 * 120.00577 * 9 7 5 12 12 H 1.48501 * 109.46950 * 240.00369 * 9 7 5 13 13 C 1.50701 * 109.47212 * 64.99766 * 3 2 1 14 14 C 1.38623 * 120.79697 * 60.00037 * 13 3 2 15 15 N 1.32327 * 119.10130 * 180.02562 * 14 13 3 16 16 C 1.31813 * 120.81565 * 359.97438 * 15 14 13 17 17 N 1.31778 * 121.75540 * 0.02562 * 16 15 14 18 18 C 1.32351 * 120.82094 * 359.70093 * 17 16 15 19 19 C 1.50702 * 120.44915 * 180.28596 * 18 17 16 20 20 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 22 22 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 23 23 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 24 24 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 25 25 H 0.96999 * 120.00073 * 179.97438 * 8 7 5 26 26 H 1.07998 * 120.45230 * 359.97438 * 14 13 3 27 27 H 1.07994 * 119.12134 * 179.97438 * 16 15 14 28 28 H 1.08998 * 109.47438 * 270.28608 * 19 18 17 29 29 H 1.09000 * 109.46659 * 30.28847 * 19 18 17 30 30 H 1.09001 * 109.46978 * 150.28613 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5989 1.5440 -0.1930 11 1 6.4961 -0.5192 -1.4625 12 1 6.4001 1.6154 -2.6091 13 6 1.6414 2.1163 1.2877 14 6 2.0685 1.6208 2.5098 15 7 1.6979 2.2386 3.6198 16 6 0.9335 3.3115 3.5725 17 7 0.5087 3.8105 2.4292 18 6 0.8433 3.2492 1.2783 19 6 0.3581 3.8306 -0.0246 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5139 0.8900 25 1 3.8292 -0.0607 -2.9502 26 1 2.6946 0.7420 2.5556 27 1 0.6471 3.7938 4.4952 28 1 -0.5984 3.3802 -0.2897 29 1 0.2351 4.9084 0.0820 30 1 1.0867 3.6238 -0.8085 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260042101.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:55 Heat of formation + Delta-G solvation = 11.442574 kcal Electronic energy + Delta-G solvation = -13484.678212 eV Core-core repulsion = 11278.795909 eV Total energy + Delta-G solvation = -2205.882303 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.93853 -37.37385 -35.16717 -33.97833 -32.36400 -29.76513 -28.64740 -25.82797 -24.31764 -23.44638 -21.32075 -18.88250 -17.96361 -17.57611 -16.77875 -15.94107 -15.51371 -14.69668 -14.57979 -14.29195 -13.98699 -13.83941 -13.47451 -13.24043 -13.06368 -12.84598 -12.67580 -12.23880 -11.83830 -11.60348 -11.31977 -11.21101 -10.98075 -10.43007 -10.02010 -9.84817 -8.10192 -6.23404 0.18489 0.21411 1.40271 1.44920 1.53747 2.42958 2.95542 3.17353 3.27876 3.42015 3.79367 4.14232 4.28997 4.52121 4.60109 4.69483 4.73373 4.75836 4.84133 5.04533 5.12155 5.21724 5.36830 5.46939 5.63363 5.68403 5.94143 6.02747 6.20846 6.34131 6.83369 7.24489 7.44225 8.93211 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.033604 B = 0.011339 C = 0.010357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.037791 B = 2468.822032 C = 2702.871340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 C 0.088 3.912 4 H 0.035 0.965 5 C -0.526 4.526 6 H 0.044 0.956 7 C 0.026 3.974 8 N -0.906 5.906 9 Si 0.946 3.054 10 H -0.275 1.275 11 H -0.279 1.279 12 H -0.281 1.281 13 C -0.143 4.143 14 C 0.136 3.864 15 N -0.539 5.539 16 C 0.259 3.741 17 N -0.532 5.532 18 C 0.148 3.852 19 C -0.101 4.101 20 H 0.053 0.947 21 H 0.033 0.967 22 H 0.048 0.952 23 H 0.073 0.927 24 H 0.032 0.968 25 H 0.263 0.737 26 H 0.161 0.839 27 H 0.223 0.777 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.760 2.807 4.419 7.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.148 4.148 3 C 0.068 3.932 4 H 0.053 0.947 5 C -0.565 4.565 6 H 0.062 0.938 7 C -0.173 4.173 8 N -0.545 5.545 9 Si 0.772 3.228 10 H -0.199 1.199 11 H -0.205 1.205 12 H -0.207 1.207 13 C -0.147 4.147 14 C -0.028 4.028 15 N -0.253 5.253 16 C -0.029 4.029 17 N -0.247 5.247 18 C 0.003 3.997 19 C -0.158 4.158 20 H 0.072 0.928 21 H 0.052 0.948 22 H 0.067 0.933 23 H 0.092 0.908 24 H 0.050 0.950 25 H 0.073 0.927 26 H 0.178 0.822 27 H 0.239 0.761 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.012 3.162 5.100 7.819 hybrid contribution 1.416 -0.600 -0.929 1.796 sum -3.597 2.562 4.171 6.074 Atomic orbital electron populations 1.21704 0.96805 1.00652 1.00054 1.21498 0.93764 0.98283 1.01267 1.17761 0.94569 0.92509 0.88349 0.94689 1.21339 0.91865 1.37880 1.05369 0.93774 1.25517 1.01564 0.94836 0.95430 1.69961 1.36098 1.38699 1.09712 0.85692 0.81488 0.77764 0.77829 1.19946 1.20519 1.20663 1.22032 0.96529 0.96853 0.99266 1.23098 0.94364 0.97971 0.87385 1.68373 1.14061 1.10553 1.32312 1.25389 0.90795 0.89887 0.96826 1.68218 1.24349 1.33059 0.99025 1.21942 0.91607 0.90979 0.95218 1.20787 1.02204 1.01791 0.90987 0.92799 0.94808 0.93261 0.90824 0.94965 0.92740 0.82161 0.76063 0.88967 0.89317 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.96 9.73 71.98 0.70 -4.26 16 2 C -0.11 -4.85 5.14 30.59 0.16 -4.69 16 3 C 0.09 4.03 1.79 -12.29 -0.02 4.00 16 4 H 0.04 1.70 5.63 -2.39 -0.01 1.69 16 5 C -0.53 -27.15 8.27 25.60 0.21 -26.94 16 6 H 0.04 2.33 7.62 -2.91 -0.02 2.31 16 7 C 0.03 1.37 5.29 84.65 0.45 1.82 16 8 N -0.91 -48.39 11.29 21.45 0.24 -48.15 16 9 Si 0.95 41.82 29.54 68.60 2.03 43.84 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 12 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 13 C -0.14 -5.90 3.72 -19.69 -0.07 -5.98 16 14 C 0.14 5.45 10.01 84.71 0.85 6.30 16 15 N -0.54 -19.89 10.44 -200.04 -2.09 -21.97 16 16 C 0.26 8.52 12.29 180.88 2.22 10.74 16 17 N -0.53 -18.89 10.38 -188.08 -1.95 -20.84 16 18 C 0.15 5.59 6.82 42.56 0.29 5.88 16 19 C -0.10 -3.23 9.63 71.24 0.69 -2.54 16 20 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 21 H 0.03 1.20 7.38 -2.39 -0.02 1.18 16 22 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.07 3.67 5.95 -2.39 -0.01 3.65 16 24 H 0.03 1.39 7.32 -2.39 -0.02 1.37 16 25 H 0.26 13.43 8.31 -92.71 -0.77 12.66 16 26 H 0.16 6.34 7.63 -2.91 -0.02 6.32 16 27 H 0.22 5.24 8.06 -2.91 -0.02 5.22 16 28 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.08 2.75 6.21 -2.39 -0.01 2.73 16 Total: -1.00 -56.27 252.33 4.82 -51.45 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: 1.13 Total: 11.34 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: 5.47 Total: -15.67 kcal Atomic # 7 Polarization: -87.17 SS G_CDS: -3.80 Total: -90.96 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal Total: -56.27 4.82 -51.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260042101.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.892 kcal (2) G-P(sol) polarization free energy of solvation -56.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds