Wall clock time and date at job start Mon Mar 30 2020 02:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.46968 * 2 1 4 4 C 1.38223 * 120.41694 * 90.00794 * 3 2 1 5 5 N 1.31858 * 120.76028 * 180.02562 * 4 3 2 6 6 C 1.31884 * 121.72812 * 359.97438 * 5 4 3 7 7 C 1.38171 * 120.76589 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.42152 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.47556 * 159.99757 * 8 7 6 10 10 N 1.46905 * 109.46910 * 39.99796 * 8 7 6 11 11 C 1.50700 * 109.47079 * 279.99953 * 8 7 6 12 12 H 1.08003 * 120.00031 * 359.97438 * 11 8 7 13 13 C 1.37877 * 119.99851 * 179.97438 * 11 8 7 14 14 N 1.31513 * 120.00267 * 359.97438 * 13 11 8 15 15 Si 1.86801 * 119.99704 * 179.97438 * 13 11 8 16 16 H 1.48501 * 109.47229 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46955 * 120.00192 * 15 13 11 18 18 H 1.48494 * 109.47398 * 239.99709 * 15 13 11 19 19 C 1.38627 * 120.41915 * 270.25255 * 3 2 1 20 20 H 1.08996 * 109.47397 * 59.99949 * 1 2 3 21 21 H 1.09008 * 109.47421 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46833 * 299.99406 * 1 2 3 23 23 H 1.09001 * 109.46576 * 240.00136 * 2 1 3 24 24 H 1.08999 * 109.47088 * 120.00751 * 2 1 3 25 25 H 1.08004 * 119.62286 * 359.97438 * 4 3 2 26 26 H 1.07997 * 119.61276 * 180.02562 * 6 5 4 27 27 H 1.00901 * 110.99869 * 300.00472 * 10 8 7 28 28 H 1.00896 * 110.99543 * 63.95595 * 10 8 7 29 29 H 0.97003 * 119.99846 * 180.02562 * 14 13 11 30 30 H 1.07999 * 120.78920 * 359.97438 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2657 2.0805 1.1920 5 7 2.7047 3.3239 1.1999 6 6 2.9380 3.9842 0.0823 7 6 2.7285 3.3892 -1.1470 8 6 2.9970 4.1511 -2.4192 9 1 3.1226 3.4491 -3.2436 10 7 4.2215 4.9477 -2.2636 11 6 1.8360 5.0663 -2.7111 12 1 0.9882 5.0933 -2.0426 13 6 1.8560 5.8693 -3.8318 14 7 2.8885 5.8369 -4.6456 15 14 0.4164 7.0033 -4.1940 16 1 -0.6111 6.8534 -3.1325 17 1 0.8908 8.4101 -4.2279 18 1 -0.1745 6.6484 -5.5093 19 6 2.2613 2.0843 -1.1954 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 1.8932 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 2.0856 1.5721 2.1277 26 1 3.2976 5.0014 0.1286 27 1 4.1302 5.6066 -1.5049 28 1 5.0255 4.3527 -2.1311 29 1 2.9027 6.4021 -5.4338 30 1 2.0844 1.5952 -2.1419 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260087950.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:30 Heat of formation + Delta-G solvation = 0.537109 kcal Electronic energy + Delta-G solvation = -13038.623290 eV Core-core repulsion = 10832.268090 eV Total energy + Delta-G solvation = -2206.355199 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.20070 -36.89811 -35.44714 -33.84067 -31.88162 -30.21247 -28.09297 -25.44769 -24.65545 -23.34403 -21.13884 -18.57738 -17.91611 -17.38918 -16.69610 -15.92031 -15.69539 -14.95667 -14.75596 -14.59398 -14.26813 -13.88322 -13.62919 -13.22102 -12.99252 -12.78432 -12.67424 -12.29464 -11.95804 -11.77113 -11.40832 -10.61854 -10.37307 -10.32524 -9.65159 -8.93757 -8.02228 -6.24060 0.27466 0.44998 1.39934 1.42919 1.52931 2.43747 2.94302 3.21718 3.58918 3.88807 4.00821 4.13056 4.22133 4.42126 4.43346 4.52299 4.56538 4.80893 5.01034 5.05538 5.09619 5.20702 5.39091 5.46806 5.61341 5.71321 5.89746 6.11301 6.59553 7.04452 7.08986 7.20767 7.48660 9.01362 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.036349 B = 0.009090 C = 0.008299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.128318 B = 3079.651054 C = 3373.127662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.073 4.073 3 C -0.126 4.126 4 C 0.068 3.932 5 N -0.500 5.500 6 C 0.073 3.927 7 C -0.136 4.136 8 C 0.264 3.736 9 H 0.017 0.983 10 N -0.818 5.818 11 C -0.543 4.543 12 H 0.041 0.959 13 C 0.038 3.962 14 N -0.877 5.877 15 Si 0.947 3.053 16 H -0.274 1.274 17 H -0.280 1.280 18 H -0.279 1.279 19 C -0.092 4.092 20 H 0.039 0.961 21 H 0.081 0.919 22 H 0.054 0.946 23 H 0.078 0.922 24 H 0.097 0.903 25 H 0.179 0.821 26 H 0.144 0.856 27 H 0.324 0.676 28 H 0.312 0.688 29 H 0.257 0.743 30 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.476 -10.215 8.455 13.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C -0.128 4.128 4 C -0.089 4.089 5 N -0.208 5.208 6 C -0.083 4.083 7 C -0.141 4.141 8 C 0.154 3.846 9 H 0.035 0.965 10 N -0.345 5.345 11 C -0.582 4.582 12 H 0.059 0.941 13 C -0.166 4.166 14 N -0.512 5.512 15 Si 0.773 3.227 16 H -0.198 1.198 17 H -0.206 1.206 18 H -0.204 1.204 19 C -0.119 4.119 20 H 0.058 0.942 21 H 0.099 0.901 22 H 0.073 0.927 23 H 0.096 0.904 24 H 0.115 0.885 25 H 0.196 0.804 26 H 0.162 0.838 27 H 0.137 0.863 28 H 0.123 0.877 29 H 0.066 0.934 30 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.378 -9.437 8.331 12.811 hybrid contribution -0.668 0.142 -0.433 0.809 sum -3.047 -9.295 7.898 12.572 Atomic orbital electron populations 1.21747 0.94184 1.02766 1.01547 1.20521 0.96451 0.89848 1.04306 1.21209 0.99383 0.99053 0.93155 1.23027 0.96871 0.90480 0.98540 1.67607 1.12208 1.09798 1.31158 1.22389 0.98860 0.99586 0.87494 1.22409 0.96942 0.95614 0.99110 1.17810 0.89007 0.90542 0.87271 0.96476 1.59006 1.04072 1.20641 1.50809 1.21073 1.02876 1.25204 1.09031 0.94073 1.25640 0.97504 0.97770 0.95699 1.70218 1.29756 1.38457 1.12804 0.85702 0.79972 0.79082 0.77915 1.19849 1.20564 1.20422 1.21580 0.97309 0.94034 0.98968 0.94180 0.90053 0.92668 0.90361 0.88484 0.80365 0.83844 0.86298 0.87676 0.93383 0.85288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.89 71.98 0.71 -2.15 16 2 C -0.07 -1.52 6.09 29.85 0.18 -1.34 16 3 C -0.13 -3.76 5.15 -19.78 -0.10 -3.86 16 4 C 0.07 2.09 10.86 84.69 0.92 3.01 16 5 N -0.50 -18.47 10.36 -195.85 -2.03 -20.50 16 6 C 0.07 2.93 10.46 84.67 0.89 3.82 16 7 C -0.14 -5.78 4.89 -19.77 -0.10 -5.88 16 8 C 0.26 13.13 2.87 43.42 0.12 13.26 16 9 H 0.02 0.95 8.04 -2.39 -0.02 0.93 16 10 N -0.82 -38.42 8.37 -174.94 -1.46 -39.88 16 11 C -0.54 -29.98 8.71 25.60 0.22 -29.75 16 12 H 0.04 2.32 7.74 -2.91 -0.02 2.29 16 13 C 0.04 2.11 5.39 84.65 0.46 2.57 16 14 N -0.88 -51.03 12.77 21.45 0.27 -50.75 16 15 Si 0.95 43.93 29.54 68.60 2.03 45.96 16 16 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 17 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 C -0.09 -3.40 9.51 22.47 0.21 -3.19 16 20 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 21 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 22 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.08 1.54 8.10 -2.39 -0.02 1.52 16 24 H 0.10 1.53 8.09 -2.39 -0.02 1.51 16 25 H 0.18 4.04 8.06 -2.91 -0.02 4.01 16 26 H 0.14 5.71 6.68 -2.91 -0.02 5.69 16 27 H 0.32 14.47 7.37 -89.69 -0.66 13.81 16 28 H 0.31 13.10 9.06 -89.70 -0.81 12.29 16 29 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 30 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -63.21 260.10 2.00 -61.22 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: -0.33 Total: 27.46 kcal Atomic # 6 Polarization: -27.02 SS G_CDS: 3.52 Total: -23.51 kcal Atomic # 7 Polarization: -107.91 SS G_CDS: -3.22 Total: -111.13 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -63.21 2.00 -61.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260087950.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.753 kcal (2) G-P(sol) polarization free energy of solvation -63.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds