Wall clock time and date at job start Mon Mar 30 2020 02:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47149 * 2 1 4 4 N 1.46495 * 109.47585 * 120.00781 * 2 1 3 5 5 C 1.39248 * 120.00206 * 154.99809 * 4 2 1 6 6 C 1.39712 * 120.78534 * 359.97438 * 5 4 2 7 7 C 1.38447 * 119.47508 * 180.02562 * 6 5 4 8 8 N 1.31531 * 121.10314 * 0.02562 * 7 6 5 9 9 C 1.33694 * 121.70245 * 359.68780 * 8 7 6 10 10 C 1.41457 * 119.79882 * 180.30448 * 9 8 7 11 11 H 1.08004 * 120.00251 * 180.26543 * 10 9 8 12 12 C 1.40018 * 120.00032 * 0.27156 * 10 9 8 13 13 N 1.30746 * 119.99876 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00045 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46997 * 89.99973 * 14 12 10 16 16 H 1.48494 * 109.46910 * 209.99691 * 14 12 10 17 17 H 1.48499 * 109.47262 * 329.99868 * 14 12 10 18 18 C 1.39027 * 120.78183 * 180.02562 * 5 4 2 19 19 H 1.09007 * 109.46805 * 299.99576 * 1 2 3 20 20 H 1.08994 * 109.47704 * 59.99339 * 1 2 3 21 21 H 1.08999 * 109.47403 * 179.97438 * 1 2 3 22 22 H 1.09007 * 109.46805 * 240.00424 * 2 1 3 23 23 H 1.08994 * 109.47358 * 300.00873 * 3 2 1 24 24 H 1.09000 * 109.46393 * 60.00906 * 3 2 1 25 25 H 1.08999 * 109.46784 * 180.02562 * 3 2 1 26 26 H 0.97008 * 119.99671 * 334.99562 * 4 2 1 27 27 H 1.08000 * 120.26325 * 0.02562 * 6 5 4 28 28 H 1.07998 * 119.44697 * 180.02562 * 7 6 5 29 29 H 0.96994 * 120.00265 * 180.02562 * 13 12 10 30 30 H 1.08002 * 120.55759 * 359.94863 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 3.2809 -1.2781 1.1940 6 6 4.0953 -1.2191 0.0603 7 6 5.3456 -1.8130 0.0880 8 7 5.7799 -2.4326 1.1640 9 6 5.0411 -2.5116 2.2755 10 6 5.5506 -3.1824 3.4119 11 1 4.9549 -3.2520 4.3101 12 6 6.8272 -3.7561 3.3724 13 7 7.5482 -3.6723 2.2850 14 14 7.5003 -4.6413 4.8734 15 1 7.1247 -6.0767 4.8113 16 1 8.9798 -4.5174 4.8989 17 1 6.9313 -4.0335 6.1030 18 6 3.7604 -1.9381 2.3198 19 1 -0.3633 0.5138 0.8901 20 1 -0.3634 0.5139 -0.8898 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8933 -0.5138 -0.8901 23 1 1.6766 1.9564 -0.8898 24 1 1.6767 1.9562 0.8901 25 1 3.1300 1.4425 -0.0005 26 1 1.4623 -0.7388 1.9894 27 1 3.7522 -0.7143 -0.8306 28 1 5.9749 -1.7667 -0.7884 29 1 8.4324 -4.0700 2.2574 30 1 3.1596 -2.0044 3.2149 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260190624.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:13 Heat of formation + Delta-G solvation = 24.237511 kcal Electronic energy + Delta-G solvation = -12951.479658 eV Core-core repulsion = 10746.152186 eV Total energy + Delta-G solvation = -2205.327473 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.38721 -36.31404 -33.41212 -31.74320 -29.78598 -27.73212 -26.97441 -25.53700 -21.81619 -21.32176 -19.86074 -17.58233 -15.82403 -15.35951 -14.93329 -14.20760 -13.95054 -13.51215 -13.17686 -12.76849 -12.24259 -12.15323 -11.99311 -11.75202 -11.29680 -11.12061 -11.07413 -10.73741 -10.55230 -10.30610 -9.70323 -9.66230 -9.06229 -7.51245 -7.39909 -6.60167 -6.27144 -4.42185 2.88196 3.14354 3.17560 3.24694 3.42740 4.01738 4.18102 4.88621 5.09694 5.29720 5.46008 5.71266 5.88938 5.92961 6.06081 6.11687 6.21733 6.26754 6.49359 6.57554 6.79296 7.00986 7.18071 7.28352 7.59585 7.70177 7.77357 8.33956 8.48598 8.57949 8.86072 9.10464 10.30852 10.46739 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.066800 B = 0.007422 C = 0.006912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.058936 B = 3771.755637 C = 4049.907499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.149 3.851 3 C -0.166 4.166 4 N -0.751 5.751 5 C 0.256 3.744 6 C -0.372 4.372 7 C 0.148 3.852 8 N -0.507 5.507 9 C 0.282 3.718 10 C -0.437 4.437 11 H 0.080 0.920 12 C 0.071 3.929 13 N -0.717 5.717 14 Si 0.905 3.095 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.263 1.263 18 C -0.347 4.347 19 H 0.055 0.945 20 H 0.063 0.937 21 H 0.058 0.942 22 H 0.075 0.925 23 H 0.053 0.947 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.388 0.612 27 H 0.092 0.908 28 H 0.115 0.885 29 H 0.270 0.730 30 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.630 4.624 -2.265 9.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.043 3.957 3 C -0.225 4.225 4 N -0.384 5.384 5 C 0.150 3.850 6 C -0.400 4.400 7 C -0.019 4.019 8 N -0.222 5.222 9 C 0.158 3.842 10 C -0.468 4.468 11 H 0.098 0.902 12 C -0.154 4.154 13 N -0.339 5.339 14 Si 0.729 3.271 15 H -0.195 1.195 16 H -0.202 1.202 17 H -0.187 1.187 18 C -0.374 4.374 19 H 0.074 0.926 20 H 0.082 0.918 21 H 0.077 0.923 22 H 0.093 0.907 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.221 0.779 27 H 0.110 0.890 28 H 0.133 0.867 29 H 0.082 0.918 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.598 4.225 -2.492 8.221 hybrid contribution -0.803 0.083 0.900 1.209 sum -7.401 4.308 -1.592 8.710 Atomic orbital electron populations 1.22051 0.95514 1.02068 1.01926 1.20669 0.92821 0.92329 0.89925 1.22289 1.02442 0.96910 1.00848 1.44480 1.16746 1.62323 1.14809 1.17673 0.83701 0.89651 0.93929 1.20868 0.99933 1.20626 0.98539 1.22290 0.91678 0.91584 0.96327 1.68754 1.34267 1.20237 0.98926 1.18338 0.86760 0.87972 0.91148 1.19568 0.99698 1.29356 0.98167 0.90191 1.26058 0.97006 0.95557 0.96759 1.70161 1.08266 1.29628 1.25811 0.86387 0.78379 0.80147 0.82196 1.19500 1.20196 1.18663 1.21157 1.01194 1.17022 0.97991 0.92629 0.91794 0.92321 0.90708 0.92826 0.93058 0.91907 0.77922 0.88965 0.86729 0.91847 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.38 37.16 0.35 -1.46 16 2 C 0.15 2.20 2.89 -67.93 -0.20 2.01 16 3 C -0.17 -2.30 9.47 37.16 0.35 -1.95 16 4 N -0.75 -13.59 5.24 -52.03 -0.27 -13.87 16 5 C 0.26 5.88 6.67 -83.65 -0.56 5.32 16 6 C -0.37 -8.61 8.97 -38.95 -0.35 -8.96 16 7 C 0.15 3.74 11.17 -17.60 -0.20 3.55 16 8 N -0.51 -14.58 7.86 -11.21 -0.09 -14.67 16 9 C 0.28 8.07 6.55 -85.02 -0.56 7.51 16 10 C -0.44 -12.18 9.14 -37.69 -0.34 -12.53 16 11 H 0.08 2.09 7.85 -52.48 -0.41 1.68 16 12 C 0.07 1.88 5.50 -17.35 -0.10 1.78 16 13 N -0.72 -19.80 11.46 55.55 0.64 -19.17 16 14 Si 0.90 19.16 29.56 -169.99 -5.02 14.14 16 15 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 16 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 17 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 18 C -0.35 -8.89 9.72 -38.48 -0.37 -9.26 16 19 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 20 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 21 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.07 1.19 6.54 -51.93 -0.34 0.85 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 1.01 7.82 -51.93 -0.41 0.60 16 26 H 0.39 6.41 8.63 -40.82 -0.35 6.06 16 27 H 0.09 1.90 6.33 -52.49 -0.33 1.57 16 28 H 0.12 2.58 8.06 -52.49 -0.42 2.16 16 29 H 0.27 6.75 8.29 -40.82 -0.34 6.41 16 30 H 0.09 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 257.18 15.07 3.88 3.88 Total: -1.00 -30.28 257.18 -6.78 -37.06 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -3.94 Total: 6.62 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -1.97 Total: -13.99 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: 0.28 Total: -47.70 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.14 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.28 -6.78 -37.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260190624.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.301 kcal (2) G-P(sol) polarization free energy of solvation -30.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds