Wall clock time and date at job start Mon Mar 30 2020 02:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47149 * 2 1 4 4 N 1.46495 * 109.47585 * 120.00781 * 2 1 3 5 5 C 1.39248 * 120.00206 * 154.99809 * 4 2 1 6 6 C 1.39712 * 120.78534 * 359.97438 * 5 4 2 7 7 C 1.38447 * 119.47508 * 180.02562 * 6 5 4 8 8 N 1.31531 * 121.10314 * 0.02562 * 7 6 5 9 9 C 1.33694 * 121.70245 * 359.68780 * 8 7 6 10 10 C 1.41457 * 119.79882 * 180.30448 * 9 8 7 11 11 H 1.08004 * 120.00251 * 180.26543 * 10 9 8 12 12 C 1.40018 * 120.00032 * 0.27156 * 10 9 8 13 13 N 1.30746 * 119.99876 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00045 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46997 * 89.99973 * 14 12 10 16 16 H 1.48494 * 109.46910 * 209.99691 * 14 12 10 17 17 H 1.48499 * 109.47262 * 329.99868 * 14 12 10 18 18 C 1.39027 * 120.78183 * 180.02562 * 5 4 2 19 19 H 1.09007 * 109.46805 * 299.99576 * 1 2 3 20 20 H 1.08994 * 109.47704 * 59.99339 * 1 2 3 21 21 H 1.08999 * 109.47403 * 179.97438 * 1 2 3 22 22 H 1.09007 * 109.46805 * 240.00424 * 2 1 3 23 23 H 1.08994 * 109.47358 * 300.00873 * 3 2 1 24 24 H 1.09000 * 109.46393 * 60.00906 * 3 2 1 25 25 H 1.08999 * 109.46784 * 180.02562 * 3 2 1 26 26 H 0.97008 * 119.99671 * 334.99562 * 4 2 1 27 27 H 1.08000 * 120.26325 * 0.02562 * 6 5 4 28 28 H 1.07998 * 119.44697 * 180.02562 * 7 6 5 29 29 H 0.96994 * 120.00265 * 180.02562 * 13 12 10 30 30 H 1.08002 * 120.55759 * 359.94863 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 3.2809 -1.2781 1.1940 6 6 4.0953 -1.2191 0.0603 7 6 5.3456 -1.8130 0.0880 8 7 5.7799 -2.4326 1.1640 9 6 5.0411 -2.5116 2.2755 10 6 5.5506 -3.1824 3.4119 11 1 4.9549 -3.2520 4.3101 12 6 6.8272 -3.7561 3.3724 13 7 7.5482 -3.6723 2.2850 14 14 7.5003 -4.6413 4.8734 15 1 7.1247 -6.0767 4.8113 16 1 8.9798 -4.5174 4.8989 17 1 6.9313 -4.0335 6.1030 18 6 3.7604 -1.9381 2.3198 19 1 -0.3633 0.5138 0.8901 20 1 -0.3634 0.5139 -0.8898 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8933 -0.5138 -0.8901 23 1 1.6766 1.9564 -0.8898 24 1 1.6767 1.9562 0.8901 25 1 3.1300 1.4425 -0.0005 26 1 1.4623 -0.7388 1.9894 27 1 3.7522 -0.7143 -0.8306 28 1 5.9749 -1.7667 -0.7884 29 1 8.4324 -4.0700 2.2574 30 1 3.1596 -2.0044 3.2149 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260190624.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:13 Heat of formation + Delta-G solvation = 4.795659 kcal Electronic energy + Delta-G solvation = -12952.322720 eV Core-core repulsion = 10746.152186 eV Total energy + Delta-G solvation = -2206.170535 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.20595 -37.84939 -35.32403 -33.31949 -31.76255 -29.41434 -28.03055 -27.49644 -23.58497 -23.10521 -21.38193 -19.44630 -17.63042 -16.95766 -16.59908 -15.97819 -15.44420 -15.12089 -14.75455 -14.31678 -14.03905 -13.76545 -13.09385 -13.04951 -12.86292 -12.83052 -12.51154 -12.36161 -12.13221 -11.81807 -11.54691 -11.34332 -10.92388 -9.52084 -9.39766 -8.31781 -8.22303 -6.48737 0.98706 1.41354 1.41971 1.55736 1.61277 2.25641 2.72804 2.92182 4.00973 4.05170 4.25486 4.29351 4.36866 4.70698 4.77209 4.78769 4.93340 4.95265 5.00714 5.12952 5.21739 5.26891 5.41766 5.46685 5.74341 5.74555 5.92164 6.31518 6.65037 6.87206 7.02032 7.15243 8.33813 8.52831 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.066800 B = 0.007422 C = 0.006912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.058936 B = 3771.755637 C = 4049.907499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.140 3.860 3 C -0.161 4.161 4 N -0.740 5.740 5 C 0.264 3.736 6 C -0.365 4.365 7 C 0.129 3.871 8 N -0.547 5.547 9 C 0.249 3.751 10 C -0.476 4.476 11 H 0.083 0.917 12 C 0.024 3.976 13 N -0.758 5.758 14 Si 0.988 3.012 15 H -0.262 1.262 16 H -0.267 1.267 17 H -0.257 1.257 18 C -0.371 4.371 19 H 0.066 0.934 20 H 0.089 0.911 21 H 0.055 0.945 22 H 0.066 0.934 23 H 0.083 0.917 24 H 0.056 0.944 25 H 0.035 0.965 26 H 0.396 0.604 27 H 0.120 0.880 28 H 0.135 0.865 29 H 0.277 0.723 30 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.961 5.275 -2.327 10.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.035 3.965 3 C -0.220 4.220 4 N -0.372 5.372 5 C 0.155 3.845 6 C -0.393 4.393 7 C -0.036 4.036 8 N -0.263 5.263 9 C 0.125 3.875 10 C -0.507 4.507 11 H 0.101 0.899 12 C -0.197 4.197 13 N -0.380 5.380 14 Si 0.808 3.192 15 H -0.187 1.187 16 H -0.191 1.191 17 H -0.180 1.180 18 C -0.398 4.398 19 H 0.085 0.915 20 H 0.108 0.892 21 H 0.074 0.926 22 H 0.084 0.916 23 H 0.102 0.898 24 H 0.075 0.925 25 H 0.054 0.946 26 H 0.231 0.769 27 H 0.138 0.862 28 H 0.152 0.848 29 H 0.088 0.912 30 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.984 4.912 -2.580 9.722 hybrid contribution -0.530 0.000 0.785 0.947 sum -8.514 4.912 -1.795 9.992 Atomic orbital electron populations 1.21989 0.92400 1.02529 1.03746 1.20976 0.95282 0.92321 0.87891 1.22230 1.00625 0.96440 1.02660 1.44629 1.14905 1.61176 1.16475 1.17736 0.85362 0.88536 0.92872 1.21109 0.99092 1.19606 0.99527 1.22741 0.93033 0.91521 0.96326 1.68700 1.35565 1.22105 0.99900 1.18790 0.88129 0.88924 0.91673 1.19934 1.01183 1.31053 0.98520 0.89861 1.27016 0.96647 0.95848 1.00203 1.70264 1.08880 1.30696 1.28201 0.85141 0.77806 0.78663 0.77602 1.18682 1.19120 1.18018 1.21253 1.00859 1.18308 0.99369 0.91545 0.89249 0.92583 0.91607 0.89844 0.92494 0.94609 0.76929 0.86185 0.84752 0.91209 0.88347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.38 71.98 0.68 -2.18 16 2 C 0.14 3.75 2.89 44.99 0.13 3.88 16 3 C -0.16 -3.98 9.47 71.98 0.68 -3.30 16 4 N -0.74 -25.49 5.24 -318.54 -1.67 -27.15 16 5 C 0.26 11.99 6.67 38.51 0.26 12.24 16 6 C -0.37 -16.70 8.97 22.68 0.20 -16.50 16 7 C 0.13 6.59 11.17 84.79 0.95 7.54 16 8 N -0.55 -32.41 7.86 -189.38 -1.49 -33.90 16 9 C 0.25 14.73 6.55 40.18 0.26 15.00 16 10 C -0.48 -27.40 9.14 23.49 0.21 -27.19 16 11 H 0.08 4.51 7.85 -2.91 -0.02 4.48 16 12 C 0.02 1.29 5.50 85.29 0.47 1.76 16 13 N -0.76 -43.00 11.46 21.84 0.25 -42.75 16 14 Si 0.99 39.79 29.56 68.60 2.03 41.82 16 15 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 16 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 17 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 18 C -0.37 -19.37 9.72 22.99 0.22 -19.14 16 19 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 20 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 21 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 22 H 0.07 1.91 6.54 -2.38 -0.02 1.89 16 23 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.03 1.07 7.82 -2.39 -0.02 1.05 16 26 H 0.40 12.35 8.63 -92.70 -0.80 11.55 16 27 H 0.12 4.73 6.33 -2.91 -0.02 4.71 16 28 H 0.14 6.08 8.06 -2.91 -0.02 6.06 16 29 H 0.28 14.14 8.29 -92.71 -0.77 13.37 16 30 H 0.10 4.84 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -67.20 257.18 3.52 -63.68 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: 0.33 Total: 26.20 kcal Atomic # 6 Polarization: -31.95 SS G_CDS: 4.06 Total: -27.89 kcal Atomic # 7 Polarization: -100.90 SS G_CDS: -2.91 Total: -103.81 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Total: -67.20 3.52 -63.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260190624.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.478 kcal (2) G-P(sol) polarization free energy of solvation -67.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds