Wall clock time and date at job start Mon Mar 30 2020 02:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50695 * 109.46982 * 2 1 4 4 C 1.36222 * 126.40765 * 85.03903 * 3 2 1 5 5 N 1.32756 * 108.62201 * 179.97438 * 4 3 2 6 6 C 1.32991 * 109.22297 * 359.76418 * 5 4 3 7 7 C 1.39997 * 125.96196 * 180.23180 * 6 5 4 8 8 H 1.07999 * 120.00195 * 149.34606 * 7 6 5 9 9 C 1.40241 * 119.99947 * 329.34263 * 7 6 5 10 10 N 1.30683 * 120.00023 * 183.58456 * 9 7 6 11 11 Si 1.86804 * 120.00079 * 3.59157 * 9 7 6 12 12 H 1.48493 * 109.47277 * 84.49095 * 11 9 7 13 13 H 1.48494 * 109.47054 * 204.49662 * 11 9 7 14 14 H 1.48501 * 109.46776 * 324.49179 * 11 9 7 15 15 N 1.36419 * 126.40164 * 264.99548 * 3 2 1 16 16 C 1.46502 * 126.55491 * 0.02562 * 15 3 2 17 17 C 1.53001 * 117.50065 * 162.66384 * 16 15 3 18 18 C 1.53003 * 117.49687 * 231.32377 * 16 15 3 19 19 H 1.09003 * 109.46343 * 60.00774 * 1 2 3 20 20 H 1.08997 * 109.46978 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.47502 * 300.00734 * 1 2 3 22 22 H 1.08994 * 109.47502 * 239.99266 * 2 1 3 23 23 H 1.09003 * 109.46343 * 119.99226 * 2 1 3 24 24 H 1.07993 * 125.68726 * 359.97438 * 4 3 2 25 25 H 0.96999 * 120.00257 * 179.97438 * 10 9 7 26 26 H 1.08996 * 115.54891 * 16.98875 * 16 15 3 27 27 H 1.09001 * 117.50028 * 215.00158 * 17 16 15 28 28 H 1.08999 * 117.49624 * 0.02562 * 17 16 15 29 29 H 1.09001 * 117.50022 * 359.97179 * 18 16 15 30 30 H 1.08997 * 117.49790 * 144.97603 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2125 2.2147 1.0922 5 7 2.6674 3.3946 0.6883 6 6 2.7921 3.3859 -0.6357 7 6 3.2477 4.4482 -1.4256 8 1 3.7739 4.2488 -2.3474 9 6 3.0207 5.7713 -1.0199 10 7 3.3835 6.7624 -1.7905 11 14 2.1999 6.1170 0.6222 12 1 3.2217 6.1009 1.6995 13 1 1.5474 7.4502 0.5785 14 1 1.1778 5.0744 0.8938 15 7 2.3925 2.1521 -1.0938 16 6 2.3641 1.7067 -2.4892 17 6 2.4150 2.7830 -3.5755 18 6 3.6364 1.8970 -3.3175 19 1 -0.3632 0.5137 -0.8901 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8898 22 1 1.8935 -0.5139 -0.8898 23 1 1.8933 -0.5137 0.8901 24 1 2.0176 1.9314 2.1160 25 1 3.2261 7.6776 -1.5101 26 1 1.7625 0.8197 -2.6874 27 1 1.8469 2.6040 -4.4884 28 1 2.4701 3.8224 -3.2520 29 1 4.4943 2.3540 -2.8244 30 1 3.8719 1.1350 -4.0604 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260392655.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:26 Heat of formation + Delta-G solvation = 54.481981 kcal Electronic energy + Delta-G solvation = -13595.641311 eV Core-core repulsion = 11391.625337 eV Total energy + Delta-G solvation = -2204.015974 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.35478 -37.91876 -35.59777 -34.45027 -32.14766 -30.62591 -26.91485 -24.03113 -23.85428 -23.22355 -21.76221 -20.10973 -19.06420 -17.44150 -16.73265 -15.88403 -15.66815 -15.06404 -14.93640 -14.72860 -14.30287 -13.60159 -13.38499 -13.24794 -12.89284 -12.60989 -12.43478 -12.22723 -11.99751 -11.89136 -11.65703 -11.35154 -11.11357 -10.10426 -9.74885 -9.00841 -8.68170 -6.43855 1.23681 1.39846 1.59979 1.67177 2.25546 2.38981 2.46655 2.96688 3.26008 3.79232 3.95186 4.07779 4.13071 4.26739 4.45994 4.58570 4.69543 4.76771 4.88959 4.94403 5.08625 5.09894 5.20757 5.29389 5.42227 5.48926 5.71784 6.07862 6.20619 6.48593 6.78418 7.13994 7.79931 8.31974 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.030213 B = 0.015013 C = 0.010964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.533404 B = 1864.562991 C = 2553.310914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.028 4.028 3 C -0.084 4.084 4 C -0.050 4.050 5 N -0.603 5.603 6 C 0.334 3.666 7 C -0.470 4.470 8 H 0.094 0.906 9 C 0.069 3.931 10 N -0.860 5.860 11 Si 1.000 3.000 12 H -0.287 1.287 13 H -0.307 1.307 14 H -0.271 1.271 15 N -0.459 5.459 16 C 0.061 3.939 17 C -0.196 4.196 18 C -0.175 4.175 19 H 0.038 0.962 20 H 0.083 0.917 21 H 0.046 0.954 22 H 0.072 0.928 23 H 0.088 0.912 24 H 0.163 0.837 25 H 0.289 0.711 26 H 0.157 0.843 27 H 0.125 0.875 28 H 0.105 0.895 29 H 0.068 0.932 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.658 -11.947 -1.734 12.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.066 4.066 3 C -0.198 4.198 4 C -0.198 4.198 5 N -0.328 5.328 6 C 0.087 3.913 7 C -0.509 4.509 8 H 0.111 0.889 9 C -0.147 4.147 10 N -0.490 5.490 11 Si 0.832 3.168 12 H -0.213 1.213 13 H -0.237 1.237 14 H -0.197 1.197 15 N -0.144 5.144 16 C -0.043 4.043 17 C -0.233 4.233 18 C -0.213 4.213 19 H 0.057 0.943 20 H 0.101 0.899 21 H 0.065 0.935 22 H 0.091 0.909 23 H 0.107 0.893 24 H 0.180 0.820 25 H 0.099 0.901 26 H 0.174 0.826 27 H 0.143 0.857 28 H 0.123 0.877 29 H 0.087 0.913 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.461 -11.194 -1.407 12.132 hybrid contribution -0.125 0.113 0.298 0.343 sum -4.586 -11.081 -1.109 12.044 Atomic orbital electron populations 1.21710 0.94374 1.02263 1.01139 1.19850 0.95966 0.87545 1.03243 1.21492 1.13858 0.97946 0.86474 1.22116 1.08059 0.91092 0.98545 1.70050 1.29409 1.24056 1.09318 1.20175 0.96804 0.85770 0.88563 1.18148 1.36596 0.88111 1.08054 0.88872 1.26199 0.93341 0.95225 0.99899 1.69520 1.40676 1.00886 1.37938 0.84781 0.79557 0.73597 0.78896 1.21323 1.23728 1.19685 1.45056 1.50858 1.12797 1.05653 1.21923 1.03665 1.01241 0.77508 1.23867 1.01407 0.99020 0.99022 1.23338 0.91771 1.03524 1.02653 0.94295 0.89863 0.93510 0.90897 0.89317 0.82009 0.90108 0.82553 0.85654 0.87690 0.91298 0.84655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.90 71.98 0.71 -2.65 16 2 C -0.03 -0.77 6.20 29.85 0.18 -0.58 16 3 C -0.08 -3.42 6.23 41.37 0.26 -3.17 16 4 C -0.05 -2.30 11.77 84.08 0.99 -1.31 16 5 N -0.60 -32.93 7.03 -194.17 -1.36 -34.29 16 6 C 0.33 17.94 6.71 133.59 0.90 18.84 16 7 C -0.47 -26.50 7.43 23.18 0.17 -26.33 16 8 H 0.09 5.29 5.06 -2.91 -0.01 5.28 16 9 C 0.07 3.92 5.52 85.35 0.47 4.39 16 10 N -0.86 -48.76 13.92 21.88 0.30 -48.45 16 11 Si 1.00 52.22 26.12 68.60 1.79 54.01 16 12 H -0.29 -15.36 7.11 99.48 0.71 -14.66 16 13 H -0.31 -15.07 7.11 99.48 0.71 -14.36 16 14 H -0.27 -14.90 6.37 99.48 0.63 -14.27 16 15 N -0.46 -20.49 3.16 -484.08 -1.53 -22.02 16 16 C 0.06 2.14 6.56 44.99 0.30 2.43 16 17 C -0.20 -6.97 9.54 30.62 0.29 -6.68 16 18 C -0.17 -5.76 9.80 30.62 0.30 -5.46 16 19 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 20 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 21 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 22 H 0.07 1.80 7.45 -2.39 -0.02 1.78 16 23 H 0.09 2.16 8.14 -2.39 -0.02 2.15 16 24 H 0.16 6.43 8.06 -2.91 -0.02 6.40 16 25 H 0.29 15.13 8.29 -92.71 -0.77 14.36 16 26 H 0.16 4.28 7.57 -2.39 -0.02 4.26 16 27 H 0.13 3.47 8.14 -2.39 -0.02 3.45 16 28 H 0.11 4.81 4.69 -2.39 -0.01 4.80 16 29 H 0.07 2.75 7.35 -2.39 -0.02 2.73 16 30 H 0.14 3.25 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -67.25 247.77 4.83 -62.41 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 1.06 Total: 8.86 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: 4.57 Total: -20.51 kcal Atomic # 7 Polarization: -102.17 SS G_CDS: -2.59 Total: -104.76 kcal Atomic # 14 Polarization: 52.22 SS G_CDS: 1.79 Total: 54.01 kcal Total: -67.25 4.83 -62.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260392655.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.894 kcal (2) G-P(sol) polarization free energy of solvation -67.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds