Wall clock time and date at job start Mon Mar 30 2020 02:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35173 * 124.78577 * 2 1 4 4 C 1.39578 * 108.00491 * 179.97438 * 3 2 1 5 5 C 1.41347 * 127.23809 * 180.02562 * 4 3 2 6 6 H 1.08008 * 119.99714 * 179.97438 * 5 4 3 7 7 C 1.39674 * 120.00001 * 359.97438 * 5 4 3 8 8 N 1.31050 * 120.00005 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99716 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47240 * 60.00179 * 9 7 5 11 11 H 1.48500 * 109.46918 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47526 * 300.00000 * 9 7 5 13 13 C 1.45949 * 105.52079 * 0.02562 * 4 3 2 14 14 C 1.34936 * 107.01163 * 359.79125 * 13 4 3 15 15 C 1.51059 * 122.90672 * 179.43138 * 14 13 4 16 16 N 1.47233 * 108.39810 * 343.83449 * 15 14 13 17 17 C 1.46961 * 111.55568 * 51.42599 * 16 15 14 18 18 C 1.50581 * 129.08021 * 180.15030 * 13 4 3 19 19 H 1.09002 * 109.47391 * 90.01933 * 1 2 3 20 20 H 1.09001 * 109.46813 * 330.01990 * 1 2 3 21 21 H 1.09004 * 109.47041 * 210.02117 * 1 2 3 22 22 H 1.08002 * 125.99465 * 359.95472 * 3 2 1 23 23 H 0.97005 * 119.99529 * 180.02562 * 8 7 5 24 24 H 1.09006 * 109.84741 * 223.99083 * 15 14 13 25 25 H 1.09005 * 109.50438 * 103.47366 * 15 14 13 26 26 H 1.00905 * 110.99570 * 287.06645 * 16 15 14 27 27 H 1.08996 * 109.46876 * 168.74350 * 17 16 15 28 28 H 1.09002 * 109.46489 * 48.74481 * 17 16 15 29 29 H 1.09000 * 109.79766 * 284.03822 * 18 13 4 30 30 H 1.09000 * 109.79609 * 44.88450 * 18 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2362 1.1102 0.0000 4 6 3.5725 0.7072 0.0006 5 6 4.7163 1.5376 0.0013 6 1 5.7028 1.0979 0.0021 7 6 4.5708 2.9268 0.0009 8 7 3.3737 3.4602 -0.0006 9 14 6.0824 4.0242 0.0011 10 1 6.8947 3.7482 -1.2111 11 1 5.6605 5.4480 0.0001 12 1 6.8939 3.7488 1.2139 13 6 3.5404 -0.7520 0.0003 14 6 2.2417 -1.1183 0.0043 15 6 1.7961 -2.5616 -0.0072 16 7 2.9388 -3.3975 -0.4111 17 6 4.1332 -3.1047 0.3937 18 6 4.6882 -1.7267 0.0038 19 1 -0.3634 -0.0003 -1.0277 20 1 -0.3633 0.8902 0.5135 21 1 -0.3633 -0.8898 0.5142 22 1 1.8806 2.1300 -0.0007 23 1 3.2727 4.4250 -0.0012 24 1 0.9779 -2.6907 -0.7159 25 1 1.4658 -2.8485 0.9912 26 1 3.1322 -3.2942 -1.3960 27 1 4.8906 -3.8666 0.2102 28 1 3.8675 -3.1035 1.4508 29 1 5.1337 -1.7760 -0.9898 30 1 5.4376 -1.4119 0.7299 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260402143.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:21 Heat of formation + Delta-G solvation = 39.260839 kcal Electronic energy + Delta-G solvation = -13458.538703 eV Core-core repulsion = 11253.862690 eV Total energy + Delta-G solvation = -2204.676012 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.68924 -36.19070 -33.53901 -31.47918 -29.44181 -27.86291 -26.66353 -23.74917 -22.57836 -21.49911 -19.14361 -17.43732 -16.50632 -15.32111 -14.84455 -14.38335 -14.13772 -13.89905 -13.08881 -12.58663 -12.41840 -12.29261 -12.00964 -11.59199 -11.15465 -10.92930 -10.84905 -10.66719 -10.56370 -10.22663 -9.74810 -9.41043 -9.08314 -8.02278 -6.97747 -6.39274 -6.28561 -3.86122 3.18473 3.24202 3.28319 3.62765 4.20682 4.37999 4.38708 4.80865 5.53925 5.61826 5.69391 5.77139 5.88337 5.92914 5.97182 6.01855 6.12695 6.16775 6.60113 6.73165 6.93936 7.14438 7.38303 7.51208 7.69996 7.77173 8.06385 8.22989 8.56166 8.96208 9.18102 9.37953 9.45135 10.71178 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.038379 B = 0.011149 C = 0.008782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.388675 B = 2510.801611 C = 3187.533641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.449 5.449 3 C -0.107 4.107 4 C 0.024 3.976 5 C -0.425 4.425 6 H 0.064 0.936 7 C 0.056 3.944 8 N -0.844 5.844 9 Si 0.910 3.090 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.272 1.272 13 C -0.223 4.223 14 C -0.065 4.065 15 C 0.140 3.860 16 N -0.680 5.680 17 C 0.060 3.940 18 C -0.063 4.063 19 H 0.050 0.950 20 H 0.069 0.931 21 H 0.061 0.939 22 H 0.183 0.817 23 H 0.268 0.732 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.339 0.661 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.853 -6.714 -0.168 7.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.129 5.129 3 C -0.233 4.233 4 C 0.019 3.981 5 C -0.459 4.459 6 H 0.082 0.918 7 C -0.152 4.152 8 N -0.477 5.477 9 Si 0.737 3.263 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.197 1.197 13 C -0.234 4.234 14 C -0.177 4.177 15 C 0.010 3.990 16 N -0.307 5.307 17 C -0.070 4.070 18 C -0.102 4.102 19 H 0.069 0.931 20 H 0.088 0.912 21 H 0.080 0.920 22 H 0.199 0.801 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.155 0.845 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.482 -6.997 0.233 7.819 hybrid contribution 0.866 1.687 -0.360 1.931 sum -2.616 -5.309 -0.127 5.920 Atomic orbital electron populations 1.21616 0.80939 1.02174 1.01039 1.42982 1.03899 1.06021 1.59988 1.23314 0.90073 0.89674 1.20271 1.18036 0.92034 0.88551 0.99511 1.18676 0.92659 0.89978 1.44594 0.91755 1.25576 0.96472 0.98513 0.94622 1.69515 1.22447 1.11832 1.43886 0.86340 0.82168 0.78620 0.79165 1.19733 1.20938 1.19715 1.20077 0.91445 0.94468 1.17432 1.20474 0.91492 0.88668 1.17093 1.20338 0.92865 0.85801 1.00016 1.60917 1.06420 1.54560 1.08799 1.22080 0.91478 0.95569 0.97869 1.20403 0.96509 0.93204 1.00092 0.93127 0.91233 0.92004 0.80084 0.92115 0.91811 0.91535 0.84460 0.91516 0.91533 0.93128 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.47 10.88 59.85 0.65 2.12 16 2 N -0.45 -10.33 3.09 -118.72 -0.37 -10.69 16 3 C -0.11 -2.90 10.38 -15.58 -0.16 -3.06 16 4 C 0.02 0.67 6.11 -105.13 -0.64 0.03 16 5 C -0.42 -12.23 9.42 -37.86 -0.36 -12.59 16 6 H 0.06 1.79 7.84 -52.48 -0.41 1.38 16 7 C 0.06 1.54 5.49 -17.35 -0.10 1.45 16 8 N -0.84 -23.47 10.40 55.53 0.58 -22.89 16 9 Si 0.91 20.70 29.56 -169.99 -5.02 15.68 16 10 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 C -0.22 -5.52 6.20 -102.77 -0.64 -6.15 16 14 C -0.07 -1.46 6.76 -81.67 -0.55 -2.01 16 15 C 0.14 2.48 6.41 -4.62 -0.03 2.45 16 16 N -0.68 -11.31 6.86 -114.22 -0.78 -12.10 16 17 C 0.06 1.01 6.57 -3.49 -0.02 0.99 16 18 C -0.06 -1.29 6.39 -27.64 -0.18 -1.47 16 19 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 20 H 0.07 1.13 8.13 -51.93 -0.42 0.70 16 21 H 0.06 0.90 7.83 -51.93 -0.41 0.49 16 22 H 0.18 5.12 5.80 -52.49 -0.30 4.81 16 23 H 0.27 6.92 8.30 -40.82 -0.34 6.58 16 24 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 25 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.34 5.46 8.78 -39.29 -0.35 5.12 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 249.44 15.07 3.76 3.76 Total: -1.00 -30.48 249.44 -7.84 -38.32 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -3.98 Total: 6.16 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -2.02 Total: -18.23 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: -0.57 Total: -45.68 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.48 -7.84 -38.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260402143.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.582 kcal (2) G-P(sol) polarization free energy of solvation -30.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds