Wall clock time and date at job start Mon Mar 30 2020 02:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35173 * 124.78577 * 2 1 4 4 C 1.39578 * 108.00491 * 179.97438 * 3 2 1 5 5 C 1.41347 * 127.23809 * 180.02562 * 4 3 2 6 6 H 1.08008 * 119.99714 * 179.97438 * 5 4 3 7 7 C 1.39674 * 120.00001 * 359.97438 * 5 4 3 8 8 N 1.31050 * 120.00005 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99716 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47240 * 60.00179 * 9 7 5 11 11 H 1.48500 * 109.46918 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47526 * 300.00000 * 9 7 5 13 13 C 1.45949 * 105.52079 * 0.02562 * 4 3 2 14 14 C 1.34936 * 107.01163 * 359.79125 * 13 4 3 15 15 C 1.51059 * 122.90672 * 179.43138 * 14 13 4 16 16 N 1.47233 * 108.39810 * 343.83449 * 15 14 13 17 17 C 1.46961 * 111.55568 * 51.42599 * 16 15 14 18 18 C 1.50581 * 129.08021 * 180.15030 * 13 4 3 19 19 H 1.09002 * 109.47391 * 90.01933 * 1 2 3 20 20 H 1.09001 * 109.46813 * 330.01990 * 1 2 3 21 21 H 1.09004 * 109.47041 * 210.02117 * 1 2 3 22 22 H 1.08002 * 125.99465 * 359.95472 * 3 2 1 23 23 H 0.97005 * 119.99529 * 180.02562 * 8 7 5 24 24 H 1.09006 * 109.84741 * 223.99083 * 15 14 13 25 25 H 1.09005 * 109.50438 * 103.47366 * 15 14 13 26 26 H 1.00905 * 110.99570 * 287.06645 * 16 15 14 27 27 H 1.08996 * 109.46876 * 168.74350 * 17 16 15 28 28 H 1.09002 * 109.46489 * 48.74481 * 17 16 15 29 29 H 1.09000 * 109.79766 * 284.03822 * 18 13 4 30 30 H 1.09000 * 109.79609 * 44.88450 * 18 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2362 1.1102 0.0000 4 6 3.5725 0.7072 0.0006 5 6 4.7163 1.5376 0.0013 6 1 5.7028 1.0979 0.0021 7 6 4.5708 2.9268 0.0009 8 7 3.3737 3.4602 -0.0006 9 14 6.0824 4.0242 0.0011 10 1 6.8947 3.7482 -1.2111 11 1 5.6605 5.4480 0.0001 12 1 6.8939 3.7488 1.2139 13 6 3.5404 -0.7520 0.0003 14 6 2.2417 -1.1183 0.0043 15 6 1.7961 -2.5616 -0.0072 16 7 2.9388 -3.3975 -0.4111 17 6 4.1332 -3.1047 0.3937 18 6 4.6882 -1.7267 0.0038 19 1 -0.3634 -0.0003 -1.0277 20 1 -0.3633 0.8902 0.5135 21 1 -0.3633 -0.8898 0.5142 22 1 1.8806 2.1300 -0.0007 23 1 3.2727 4.4250 -0.0012 24 1 0.9779 -2.6907 -0.7159 25 1 1.4658 -2.8485 0.9912 26 1 3.1322 -3.2942 -1.3960 27 1 4.8906 -3.8666 0.2102 28 1 3.8675 -3.1035 1.4508 29 1 5.1337 -1.7760 -0.9898 30 1 5.4376 -1.4119 0.7299 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260402143.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:21 Heat of formation + Delta-G solvation = 18.736253 kcal Electronic energy + Delta-G solvation = -13459.428715 eV Core-core repulsion = 11253.862690 eV Total energy + Delta-G solvation = -2205.566025 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.44782 -37.69753 -35.52525 -33.22322 -30.95259 -29.66286 -28.43881 -25.52287 -24.18825 -23.01443 -21.08874 -19.11680 -18.40488 -17.20318 -16.36764 -16.13283 -15.68674 -15.38487 -14.76359 -14.28186 -14.04632 -13.92473 -13.55690 -13.11729 -12.97257 -12.74005 -12.56544 -12.31102 -12.18959 -11.80008 -11.58736 -11.36600 -11.07641 -9.46862 -8.93174 -8.32306 -8.26062 -5.97574 1.36928 1.37529 1.49169 1.85180 2.31117 2.35900 2.71886 3.43400 3.62763 4.16640 4.26016 4.29025 4.45657 4.49919 4.55936 4.68909 4.71127 4.78600 5.04178 5.15521 5.21825 5.32100 5.41836 5.86475 5.93957 6.06629 6.23483 6.43976 6.64661 6.99756 7.23551 7.37180 7.42349 8.67413 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.038379 B = 0.011149 C = 0.008782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.388675 B = 2510.801611 C = 3187.533641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.454 5.454 3 C -0.134 4.134 4 C -0.026 4.026 5 C -0.463 4.463 6 H 0.056 0.944 7 C 0.009 3.991 8 N -0.869 5.869 9 Si 0.982 3.018 10 H -0.267 1.267 11 H -0.272 1.272 12 H -0.267 1.267 13 C -0.263 4.263 14 C -0.047 4.047 15 C 0.145 3.855 16 N -0.667 5.667 17 C 0.070 3.930 18 C -0.061 4.061 19 H 0.068 0.932 20 H 0.072 0.928 21 H 0.095 0.905 22 H 0.163 0.837 23 H 0.273 0.727 24 H 0.091 0.909 25 H 0.083 0.917 26 H 0.344 0.656 27 H 0.099 0.901 28 H 0.065 0.935 29 H 0.049 0.951 30 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.337 -8.298 -0.241 8.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.134 5.134 3 C -0.261 4.261 4 C -0.031 4.031 5 C -0.497 4.497 6 H 0.074 0.926 7 C -0.196 4.196 8 N -0.502 5.502 9 Si 0.805 3.195 10 H -0.192 1.192 11 H -0.197 1.197 12 H -0.192 1.192 13 C -0.273 4.273 14 C -0.160 4.160 15 C 0.014 3.986 16 N -0.294 5.294 17 C -0.059 4.059 18 C -0.100 4.100 19 H 0.087 0.913 20 H 0.091 0.909 21 H 0.114 0.886 22 H 0.180 0.820 23 H 0.083 0.917 24 H 0.110 0.890 25 H 0.101 0.899 26 H 0.161 0.839 27 H 0.117 0.883 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.999 -8.599 0.155 9.485 hybrid contribution 0.925 2.125 -0.343 2.343 sum -3.074 -6.474 -0.188 7.170 Atomic orbital electron populations 1.21949 0.77499 1.04085 1.02796 1.43249 1.06127 1.05030 1.58955 1.23010 0.90707 0.90295 1.22131 1.18599 0.92662 0.91061 1.00770 1.18950 0.92739 0.91369 1.46637 0.92566 1.26466 0.99811 0.99531 0.93822 1.69640 1.24232 1.12288 1.44035 0.85245 0.78146 0.76822 0.79283 1.19184 1.19683 1.19170 1.20565 0.94072 0.93674 1.19013 1.21319 0.90906 0.90689 1.13135 1.20564 0.93937 0.82257 1.01855 1.60965 1.05969 1.53326 1.09171 1.22053 0.92245 0.93905 0.97741 1.20447 0.95192 0.94618 0.99739 0.91332 0.90916 0.88604 0.82016 0.91694 0.89043 0.89913 0.83865 0.88319 0.91688 0.93288 0.93419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.51 10.88 127.77 1.39 3.90 16 2 N -0.45 -20.65 3.09 -529.52 -1.64 -22.29 16 3 C -0.13 -7.51 10.38 84.50 0.88 -6.63 16 4 C -0.03 -1.51 6.11 -20.19 -0.12 -1.63 16 5 C -0.46 -27.86 9.42 23.38 0.22 -27.64 16 6 H 0.06 3.30 7.84 -2.91 -0.02 3.28 16 7 C 0.01 0.51 5.49 85.16 0.47 0.98 16 8 N -0.87 -50.01 10.40 21.79 0.23 -49.78 16 9 Si 0.98 43.42 29.56 68.60 2.03 45.45 16 10 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 12 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 13 C -0.26 -13.12 6.20 -18.66 -0.12 -13.24 16 14 C -0.05 -2.02 6.76 41.24 0.28 -1.74 16 15 C 0.14 4.57 6.41 85.61 0.55 5.12 16 16 N -0.67 -19.79 6.86 -515.29 -3.54 -23.33 16 17 C 0.07 2.19 6.57 86.49 0.57 2.76 16 18 C -0.06 -2.48 6.39 30.01 0.19 -2.29 16 19 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 20 H 0.07 2.27 8.13 -2.39 -0.02 2.25 16 21 H 0.10 2.42 7.83 -2.38 -0.02 2.40 16 22 H 0.16 9.61 5.80 -2.91 -0.02 9.59 16 23 H 0.27 14.46 8.30 -92.70 -0.77 13.69 16 24 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 25 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 26 H 0.34 9.91 8.78 -89.69 -0.79 9.13 16 27 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.06 2.07 8.08 -2.39 -0.02 2.05 16 29 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -68.70 249.44 1.74 -66.96 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 0.35 Total: 23.40 kcal Atomic # 6 Polarization: -44.71 SS G_CDS: 4.30 Total: -40.41 kcal Atomic # 7 Polarization: -90.45 SS G_CDS: -4.95 Total: -95.40 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -68.70 1.74 -66.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260402143.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.695 kcal (2) G-P(sol) polarization free energy of solvation -68.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds