Wall clock time and date at job start Mon Mar 30 2020 02:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36420 * 126.55148 * 2 1 4 4 C 1.36222 * 107.19163 * 180.23874 * 3 2 1 5 5 C 1.50694 * 125.69031 * 179.77947 * 4 3 2 6 6 C 1.53780 * 113.61851 * 14.13233 * 5 4 3 7 7 C 1.53952 * 87.02370 * 220.05142 * 6 5 4 8 8 C 1.53779 * 87.11042 * 25.36244 * 7 6 5 9 9 N 1.32759 * 108.61965 * 359.75869 * 4 3 2 10 10 C 1.32983 * 109.22352 * 359.97438 * 9 4 3 11 11 C 1.40001 * 125.96486 * 179.97438 * 10 9 4 12 12 H 1.07998 * 120.00205 * 185.72868 * 11 10 9 13 13 C 1.40237 * 119.99688 * 5.44461 * 11 10 9 14 14 N 1.30691 * 120.00032 * 354.25963 * 13 11 10 15 15 Si 1.86800 * 119.99719 * 174.25774 * 13 11 10 16 16 H 1.48497 * 109.47247 * 94.98612 * 15 13 11 17 17 H 1.48502 * 109.46903 * 214.98222 * 15 13 11 18 18 H 1.48495 * 109.47284 * 334.98073 * 15 13 11 19 19 H 1.08994 * 109.47207 * 270.17231 * 1 2 3 20 20 H 1.09003 * 109.47415 * 30.17373 * 1 2 3 21 21 H 1.09003 * 109.46650 * 150.17615 * 1 2 3 22 22 H 1.07997 * 126.40809 * 359.96804 * 3 2 1 23 23 H 1.09004 * 112.85022 * 145.33835 * 5 4 3 24 24 H 1.08998 * 113.60904 * 334.57179 * 6 5 4 25 25 H 1.09001 * 113.61233 * 105.46865 * 6 5 4 26 26 H 1.08999 * 113.53229 * 270.81538 * 7 6 5 27 27 H 1.08994 * 113.74449 * 139.94548 * 7 6 5 28 28 H 1.08998 * 113.61544 * 220.09376 * 8 7 6 29 29 H 1.08999 * 113.69175 * 89.20345 * 8 7 6 30 30 H 0.97004 * 119.99381 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2775 1.0959 0.0000 4 6 3.5626 0.6443 -0.0054 5 6 4.7978 1.5076 -0.0121 6 6 4.5216 2.9809 0.3315 7 6 5.5384 3.3440 -0.7660 8 6 5.2045 1.9902 -1.4145 9 7 3.5455 -0.6832 -0.0034 10 6 2.2843 -1.1048 0.0038 11 6 1.8638 -2.4401 0.0075 12 1 0.8134 -2.6757 -0.0800 13 6 2.8070 -3.4719 0.1188 14 7 4.0839 -3.1941 0.1061 15 14 2.2380 -5.2434 0.2852 16 1 2.2188 -5.8850 -1.0538 17 1 3.1709 -5.9813 1.1743 18 1 0.8723 -5.2720 0.8676 19 1 -0.3633 0.0031 1.0276 20 1 -0.3634 0.8884 -0.5165 21 1 -0.3633 -0.8916 -0.5111 22 1 1.9610 2.1284 -0.0005 23 1 5.6207 1.0735 0.5559 24 1 3.5036 3.2983 0.1058 25 1 4.8414 3.2625 1.3347 26 1 6.5640 3.4132 -0.4035 27 1 5.2442 4.2020 -1.3703 28 1 6.0747 1.4732 -1.8188 29 1 4.3738 2.0350 -2.1188 30 1 4.7363 -3.9079 0.1835 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260481638.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:00 Heat of formation + Delta-G solvation = 70.099606 kcal Electronic energy + Delta-G solvation = -13233.766473 eV Core-core repulsion = 11030.427730 eV Total energy + Delta-G solvation = -2203.338743 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.96937 -37.68620 -33.26618 -32.24566 -28.72582 -26.28028 -25.74696 -24.92105 -23.24306 -19.79386 -19.51240 -17.88838 -16.60017 -15.64485 -14.81815 -14.48446 -14.05068 -13.75429 -12.91315 -12.65687 -12.11470 -11.93038 -11.72093 -11.42011 -11.31814 -11.06620 -10.98986 -10.49383 -10.21028 -9.94089 -9.81964 -9.61085 -9.10189 -7.74447 -7.67291 -6.88640 -6.33558 -4.19665 3.08054 3.18877 3.21889 3.69371 4.07030 4.52775 4.67644 5.23918 5.26326 5.35934 5.56114 5.72797 5.84983 6.03409 6.09103 6.19022 6.23308 6.32098 6.35897 6.45295 6.51252 6.57345 6.85167 7.00907 7.29018 7.46271 7.70611 8.16482 8.33117 8.65723 9.04064 9.41107 10.34119 10.60260 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.042209 B = 0.009631 C = 0.008119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.206333 B = 2906.432160 C = 3447.677642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.513 5.513 3 C -0.170 4.170 4 C 0.023 3.977 5 C -0.014 4.014 6 C -0.132 4.132 7 C -0.144 4.144 8 C -0.126 4.126 9 N -0.511 5.511 10 C 0.375 3.625 11 C -0.466 4.466 12 H 0.076 0.924 13 C 0.083 3.917 14 N -0.743 5.743 15 Si 0.908 3.092 16 H -0.273 1.273 17 H -0.278 1.278 18 H -0.265 1.265 19 H 0.047 0.953 20 H 0.056 0.944 21 H 0.071 0.929 22 H 0.133 0.867 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.638 6.270 -0.575 6.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.204 5.204 3 C -0.300 4.300 4 C -0.111 4.111 5 C -0.033 4.033 6 C -0.170 4.170 7 C -0.181 4.181 8 C -0.164 4.164 9 N -0.232 5.232 10 C 0.132 3.868 11 C -0.505 4.505 12 H 0.094 0.906 13 C -0.140 4.140 14 N -0.368 5.368 15 Si 0.733 3.267 16 H -0.198 1.198 17 H -0.203 1.203 18 H -0.189 1.189 19 H 0.066 0.934 20 H 0.075 0.925 21 H 0.090 0.910 22 H 0.150 0.850 23 H 0.105 0.895 24 H 0.097 0.903 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.860 5.750 -0.571 5.842 hybrid contribution -1.138 -0.232 0.095 1.165 sum -1.998 5.519 -0.476 5.888 Atomic orbital electron populations 1.21405 0.80329 1.01820 1.00791 1.45316 1.04868 1.07069 1.63105 1.21493 0.91332 0.90512 1.26675 1.20338 0.91389 0.92907 1.06426 1.20511 0.95009 0.91681 0.96119 1.22966 0.99144 0.96990 0.97928 1.22859 0.99098 0.97572 0.98618 1.22866 1.00795 0.95457 0.97298 1.71152 1.17465 1.06671 1.27865 1.20244 0.83372 0.87574 0.95659 1.18077 0.94361 0.87119 1.50979 0.90582 1.25672 0.94409 1.00304 0.93665 1.70031 1.00986 1.33287 1.32480 0.86329 0.79436 0.82275 0.78688 1.19816 1.20273 1.18916 0.93397 0.92535 0.91031 0.84981 0.89535 0.90296 0.92252 0.90783 0.92249 0.92108 0.90587 0.91875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.92 10.97 59.85 0.66 2.58 16 2 N -0.51 -12.73 3.21 -123.36 -0.40 -13.13 16 3 C -0.17 -4.06 10.76 -16.24 -0.17 -4.24 16 4 C 0.02 0.59 6.47 -82.92 -0.54 0.05 16 5 C -0.01 -0.28 4.28 -90.96 -0.39 -0.67 16 6 C -0.13 -2.19 7.46 -25.83 -0.19 -2.38 16 7 C -0.14 -2.10 8.09 -25.83 -0.21 -2.31 16 8 C -0.13 -2.27 7.63 -25.92 -0.20 -2.47 16 9 N -0.51 -15.13 9.43 -8.95 -0.08 -15.21 16 10 C 0.37 10.76 7.43 -155.60 -1.16 9.60 16 11 C -0.47 -13.00 9.01 -38.17 -0.34 -13.34 16 12 H 0.08 1.96 7.12 -52.49 -0.37 1.58 16 13 C 0.08 2.23 5.49 -17.29 -0.09 2.14 16 14 N -0.74 -21.23 11.92 55.56 0.66 -20.56 16 15 Si 0.91 19.55 29.57 -169.99 -5.03 14.52 16 16 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 17 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 18 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 19 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 20 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 21 H 0.07 1.31 7.33 -51.93 -0.38 0.93 16 22 H 0.13 2.72 6.80 -52.49 -0.36 2.36 16 23 H 0.09 1.85 8.14 -51.93 -0.42 1.42 16 24 H 0.08 1.29 6.41 -51.93 -0.33 0.96 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.08 1.42 8.09 -51.93 -0.42 1.00 16 30 H 0.27 7.02 8.29 -40.82 -0.34 6.69 16 LS Contribution 254.08 15.07 3.83 3.83 Total: -1.00 -32.08 254.08 -7.61 -39.69 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -3.96 Total: 1.89 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -2.64 Total: -11.04 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: 0.18 Total: -48.90 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.03 Total: 14.52 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -32.08 -7.61 -39.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260481638.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.792 kcal (2) G-P(sol) polarization free energy of solvation -32.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds