Wall clock time and date at job start Mon Mar 30 2020 02:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36420 * 126.55148 * 2 1 4 4 C 1.36222 * 107.19163 * 180.23874 * 3 2 1 5 5 C 1.50694 * 125.69031 * 179.77947 * 4 3 2 6 6 C 1.53780 * 113.61851 * 14.13233 * 5 4 3 7 7 C 1.53952 * 87.02370 * 220.05142 * 6 5 4 8 8 C 1.53779 * 87.11042 * 25.36244 * 7 6 5 9 9 N 1.32759 * 108.61965 * 359.75869 * 4 3 2 10 10 C 1.32983 * 109.22352 * 359.97438 * 9 4 3 11 11 C 1.40001 * 125.96486 * 179.97438 * 10 9 4 12 12 H 1.07998 * 120.00205 * 185.72868 * 11 10 9 13 13 C 1.40237 * 119.99688 * 5.44461 * 11 10 9 14 14 N 1.30691 * 120.00032 * 354.25963 * 13 11 10 15 15 Si 1.86800 * 119.99719 * 174.25774 * 13 11 10 16 16 H 1.48497 * 109.47247 * 94.98612 * 15 13 11 17 17 H 1.48502 * 109.46903 * 214.98222 * 15 13 11 18 18 H 1.48495 * 109.47284 * 334.98073 * 15 13 11 19 19 H 1.08994 * 109.47207 * 270.17231 * 1 2 3 20 20 H 1.09003 * 109.47415 * 30.17373 * 1 2 3 21 21 H 1.09003 * 109.46650 * 150.17615 * 1 2 3 22 22 H 1.07997 * 126.40809 * 359.96804 * 3 2 1 23 23 H 1.09004 * 112.85022 * 145.33835 * 5 4 3 24 24 H 1.08998 * 113.60904 * 334.57179 * 6 5 4 25 25 H 1.09001 * 113.61233 * 105.46865 * 6 5 4 26 26 H 1.08999 * 113.53229 * 270.81538 * 7 6 5 27 27 H 1.08994 * 113.74449 * 139.94548 * 7 6 5 28 28 H 1.08998 * 113.61544 * 220.09376 * 8 7 6 29 29 H 1.08999 * 113.69175 * 89.20345 * 8 7 6 30 30 H 0.97004 * 119.99381 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2775 1.0959 0.0000 4 6 3.5626 0.6443 -0.0054 5 6 4.7978 1.5076 -0.0121 6 6 4.5216 2.9809 0.3315 7 6 5.5384 3.3440 -0.7660 8 6 5.2045 1.9902 -1.4145 9 7 3.5455 -0.6832 -0.0034 10 6 2.2843 -1.1048 0.0038 11 6 1.8638 -2.4401 0.0075 12 1 0.8134 -2.6757 -0.0800 13 6 2.8070 -3.4719 0.1188 14 7 4.0839 -3.1941 0.1061 15 14 2.2380 -5.2434 0.2852 16 1 2.2188 -5.8850 -1.0538 17 1 3.1709 -5.9813 1.1743 18 1 0.8723 -5.2720 0.8676 19 1 -0.3633 0.0031 1.0276 20 1 -0.3634 0.8884 -0.5165 21 1 -0.3633 -0.8916 -0.5111 22 1 1.9610 2.1284 -0.0005 23 1 5.6207 1.0735 0.5559 24 1 3.5036 3.2983 0.1058 25 1 4.8414 3.2625 1.3347 26 1 6.5640 3.4132 -0.4035 27 1 5.2442 4.2020 -1.3703 28 1 6.0747 1.4732 -1.8188 29 1 4.3738 2.0350 -2.1188 30 1 4.7363 -3.9079 0.1835 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260481638.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:00 Heat of formation + Delta-G solvation = 50.811535 kcal Electronic energy + Delta-G solvation = -13234.602866 eV Core-core repulsion = 11030.427730 eV Total energy + Delta-G solvation = -2204.175137 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.85943 -39.14517 -35.26333 -34.06581 -30.68336 -27.88529 -27.60142 -26.32621 -24.94557 -21.57478 -21.26278 -19.55103 -18.54644 -17.44358 -16.42483 -16.13820 -15.79357 -15.27223 -14.64864 -14.50984 -13.69491 -13.48886 -13.21528 -13.02422 -12.88670 -12.78543 -12.60872 -12.38253 -11.91221 -11.42193 -11.25895 -11.06991 -11.00685 -9.70713 -9.68119 -8.85888 -8.31972 -6.25629 1.36189 1.42301 1.57554 1.83057 2.26865 2.72554 2.76885 3.59266 3.87466 3.94583 3.98786 4.25296 4.31421 4.57897 4.60192 4.68092 4.75272 4.87227 4.94251 4.99131 5.12175 5.17450 5.25165 5.39275 5.51931 5.73294 5.78032 6.21257 6.34663 6.74976 7.04101 7.43679 8.36505 8.64940 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.042209 B = 0.009631 C = 0.008119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.206333 B = 2906.432160 C = 3447.677642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.519 5.519 3 C -0.158 4.158 4 C -0.011 4.011 5 C -0.035 4.035 6 C -0.120 4.120 7 C -0.119 4.119 8 C -0.129 4.129 9 N -0.559 5.559 10 C 0.335 3.665 11 C -0.496 4.496 12 H 0.088 0.912 13 C 0.031 3.969 14 N -0.794 5.794 15 Si 0.993 3.007 16 H -0.264 1.264 17 H -0.273 1.273 18 H -0.253 1.253 19 H 0.063 0.937 20 H 0.090 0.910 21 H 0.073 0.927 22 H 0.170 0.830 23 H 0.066 0.934 24 H 0.084 0.916 25 H 0.072 0.928 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.727 7.392 -0.573 7.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.208 5.208 3 C -0.288 4.288 4 C -0.143 4.143 5 C -0.054 4.054 6 C -0.158 4.158 7 C -0.156 4.156 8 C -0.167 4.167 9 N -0.281 5.281 10 C 0.089 3.911 11 C -0.536 4.536 12 H 0.106 0.894 13 C -0.188 4.188 14 N -0.420 5.420 15 Si 0.813 3.187 16 H -0.189 1.189 17 H -0.198 1.198 18 H -0.176 1.176 19 H 0.082 0.918 20 H 0.109 0.891 21 H 0.091 0.909 22 H 0.187 0.813 23 H 0.085 0.915 24 H 0.102 0.898 25 H 0.091 0.909 26 H 0.109 0.891 27 H 0.104 0.896 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.981 6.909 -0.571 7.210 hybrid contribution -0.835 -0.471 0.085 0.962 sum -2.816 6.437 -0.486 7.043 Atomic orbital electron populations 1.21725 0.77144 1.03638 1.02385 1.45638 1.07028 1.06297 1.61825 1.22092 0.90876 0.91799 1.24009 1.21145 0.93971 0.92199 1.07029 1.20741 0.92990 0.93457 0.98239 1.22920 1.00157 0.93195 0.99504 1.22765 0.99560 0.96131 0.97120 1.22855 1.00219 0.97840 0.95755 1.71048 1.18985 1.09210 1.28887 1.20608 0.84207 0.88938 0.97309 1.18529 0.95261 0.87701 1.52080 0.89431 1.26770 0.94195 1.05311 0.92527 1.70185 1.02570 1.35094 1.34123 0.85053 0.79242 0.75436 0.78938 1.18936 1.19779 1.17638 0.91812 0.89116 0.90859 0.81320 0.91530 0.89790 0.90884 0.89067 0.89558 0.92647 0.91587 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.38 10.97 127.77 1.40 4.78 16 2 N -0.52 -25.49 3.21 -544.21 -1.75 -27.24 16 3 C -0.16 -7.37 10.76 83.51 0.90 -6.47 16 4 C -0.01 -0.56 6.47 41.95 0.27 -0.29 16 5 C -0.03 -1.44 4.28 -11.01 -0.05 -1.49 16 6 C -0.12 -3.67 7.46 31.18 0.23 -3.44 16 7 C -0.12 -3.10 8.09 31.18 0.25 -2.84 16 8 C -0.13 -4.55 7.63 31.12 0.24 -4.31 16 9 N -0.56 -34.39 9.43 -182.22 -1.72 -36.11 16 10 C 0.33 19.70 7.43 133.59 0.99 20.69 16 11 C -0.50 -28.29 9.01 23.18 0.21 -28.09 16 12 H 0.09 4.55 7.12 -2.91 -0.02 4.52 16 13 C 0.03 1.68 5.49 85.35 0.47 2.15 16 14 N -0.79 -47.15 11.92 21.88 0.26 -46.89 16 15 Si 0.99 40.66 29.57 68.60 2.03 42.69 16 16 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 17 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 18 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 19 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 20 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 21 H 0.07 2.60 7.33 -2.39 -0.02 2.58 16 22 H 0.17 6.44 6.80 -2.91 -0.02 6.42 16 23 H 0.07 2.95 8.14 -2.38 -0.02 2.93 16 24 H 0.08 2.47 6.41 -2.39 -0.02 2.46 16 25 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.07 2.44 8.09 -2.39 -0.02 2.42 16 30 H 0.27 14.82 8.29 -92.71 -0.77 14.05 16 Total: -1.00 -72.60 254.08 4.86 -67.74 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 1.12 Total: 19.12 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: 4.92 Total: -19.31 kcal Atomic # 7 Polarization: -107.04 SS G_CDS: -3.20 Total: -110.24 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Total: -72.60 4.86 -67.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260481638.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.551 kcal (2) G-P(sol) polarization free energy of solvation -72.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds