Wall clock time and date at job start Mon Mar 30 2020 02:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 H 1.07998 * 120.00129 * 240.00616 * 4 2 1 6 6 C 1.37880 * 119.99861 * 59.99898 * 4 2 1 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47094 * 90.00289 * 8 6 4 10 10 H 1.48505 * 109.47195 * 210.00171 * 8 6 4 11 11 H 1.48493 * 109.47449 * 330.00136 * 8 6 4 12 12 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 13 13 C 1.34560 * 125.98429 * 34.99981 * 12 2 1 14 14 N 1.37191 * 106.83951 * 179.97438 * 13 12 2 15 15 C 1.34820 * 107.21690 * 0.11034 * 14 13 12 16 16 N 1.30906 * 108.60869 * 359.61789 * 15 14 13 17 17 C 1.51568 * 109.94158 * 179.79586 * 15 14 13 18 18 C 1.54538 * 104.24701 * 343.44919 * 17 15 14 19 19 C 1.47011 * 141.60324 * 180.21238 * 14 13 12 20 20 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 21 21 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 23 23 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 24 24 H 1.08003 * 126.57920 * 359.89543 * 13 12 2 25 25 H 1.09004 * 110.47730 * 224.75405 * 17 15 14 26 26 H 1.09006 * 110.58797 * 102.19472 * 17 15 14 27 27 H 1.09002 * 110.96415 * 267.04491 * 18 17 15 28 28 H 1.09000 * 110.96503 * 143.28897 * 18 17 15 29 29 H 1.08995 * 110.23517 * 316.01605 * 19 14 13 30 30 H 1.08996 * 110.23184 * 77.98514 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1617 -4.4118 10 1 2.4868 -0.1414 -5.1123 11 1 3.6294 -1.7584 -3.7121 12 6 2.0323 -0.7104 1.2305 13 6 1.4549 -1.7726 1.8213 14 7 2.2347 -2.0990 2.9018 15 6 3.2591 -1.2230 2.9338 16 7 3.1348 -0.3979 1.9251 17 6 4.1615 -1.5258 4.1133 18 6 3.3059 -2.4362 5.0229 19 6 2.3250 -3.0625 4.0085 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 0.7096 1.1617 -3.4844 24 1 0.5504 -2.2716 1.5061 25 1 4.4276 -0.6068 4.6356 26 1 5.0589 -2.0501 3.7848 27 1 2.7721 -1.8495 5.7706 28 1 3.9199 -3.2025 5.4961 29 1 1.3463 -3.2023 4.4674 30 1 2.7127 -4.0153 3.6481 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260518816.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:48 Heat of formation + Delta-G solvation = 63.294602 kcal Electronic energy + Delta-G solvation = -13183.606587 eV Core-core repulsion = 10979.972757 eV Total energy + Delta-G solvation = -2203.633830 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.71928 -36.31994 -33.79268 -31.25938 -30.67345 -27.27516 -26.44063 -25.00466 -22.32575 -21.20474 -19.29397 -18.70042 -16.55254 -15.98538 -15.65497 -14.56356 -13.85914 -13.52721 -13.20738 -12.97884 -12.46095 -12.31091 -12.14978 -11.57631 -11.31811 -11.04106 -10.84088 -10.62664 -10.23783 -9.99670 -9.67758 -9.12685 -8.91433 -8.61403 -8.23211 -7.29695 -5.87801 -3.92559 2.75577 3.29106 3.37738 3.43739 3.48947 4.04894 4.16986 4.55991 4.61427 4.70984 4.91143 5.29089 5.42258 5.47916 5.51759 5.73185 5.81632 5.92296 6.42358 6.59058 6.95827 7.06840 7.11250 7.32256 7.67844 7.78937 7.89638 8.11951 8.23196 8.55358 9.04728 9.08695 9.70147 11.18179 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.054121 B = 0.008151 C = 0.007815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.237735 B = 3434.256424 C = 3582.142913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.114 3.886 3 H 0.041 0.959 4 C -0.496 4.496 5 H 0.053 0.947 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.893 3.107 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.068 3.932 13 C -0.058 4.058 14 N -0.491 5.491 15 C 0.158 3.842 16 N -0.478 5.478 17 C -0.035 4.035 18 C -0.129 4.129 19 C 0.106 3.894 20 H 0.087 0.913 21 H 0.025 0.975 22 H 0.009 0.991 23 H 0.259 0.741 24 H 0.164 0.836 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.142 -7.465 13.664 15.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.095 3.905 3 H 0.059 0.941 4 C -0.534 4.534 5 H 0.071 0.929 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.721 3.279 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.200 1.200 12 C -0.061 4.061 13 C -0.186 4.186 14 N -0.179 5.179 15 C -0.104 4.104 16 N -0.198 5.198 17 C -0.074 4.074 18 C -0.167 4.167 19 C -0.016 4.016 20 H 0.105 0.895 21 H 0.045 0.955 22 H 0.028 0.972 23 H 0.069 0.931 24 H 0.182 0.818 25 H 0.109 0.891 26 H 0.106 0.894 27 H 0.102 0.898 28 H 0.113 0.887 29 H 0.100 0.900 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.426 -6.897 13.363 15.232 hybrid contribution -0.325 -1.288 -0.758 1.530 sum 2.100 -8.185 12.605 15.175 Atomic orbital electron populations 1.21780 0.97793 0.98969 1.00336 1.17215 0.91885 0.95384 0.86031 0.94073 1.21051 1.30529 1.11992 0.89868 0.92917 1.24927 0.95301 0.95082 0.98765 1.69888 1.37187 1.22959 1.23210 0.86575 0.79215 0.79336 0.82764 1.20824 1.21212 1.20040 1.21646 0.91069 0.95534 0.97862 1.22107 1.01127 1.03550 0.91778 1.46286 1.22843 1.26209 1.22552 1.24161 0.93253 0.93095 0.99861 1.69846 1.19787 1.25626 1.04548 1.20497 0.96053 1.00446 0.90448 1.22695 0.97404 0.99518 0.97111 1.22175 1.01034 0.92139 0.86257 0.89463 0.95540 0.97237 0.93066 0.81839 0.89143 0.89357 0.89845 0.88710 0.90018 0.90157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.30 8.55 37.16 0.32 -2.98 16 2 C 0.11 3.16 2.75 -92.92 -0.26 2.90 16 3 H 0.04 1.25 8.14 -51.93 -0.42 0.83 16 4 C -0.50 -14.57 8.55 -34.44 -0.29 -14.86 16 5 H 0.05 1.58 7.74 -52.49 -0.41 1.17 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -26.39 11.32 55.43 0.63 -25.76 16 8 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 9 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 C 0.07 1.70 5.95 -82.94 -0.49 1.20 16 13 C -0.06 -1.24 11.18 -16.45 -0.18 -1.42 16 14 N -0.49 -8.86 3.61 -112.28 -0.41 -9.26 16 15 C 0.16 3.05 8.58 -154.85 -1.33 1.73 16 16 N -0.48 -11.69 11.26 -6.82 -0.08 -11.76 16 17 C -0.04 -0.44 6.86 -26.65 -0.18 -0.62 16 18 C -0.13 -1.15 7.17 -25.20 -0.18 -1.33 16 19 C 0.11 1.23 7.78 -3.04 -0.02 1.21 16 20 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 21 H 0.03 0.62 7.28 -51.93 -0.38 0.24 16 22 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 23 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 24 H 0.16 3.21 7.37 -52.48 -0.39 2.83 16 25 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 251.63 15.07 3.79 3.79 Total: -1.00 -33.94 251.63 -7.81 -41.75 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: -4.00 Total: -3.39 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -2.72 Total: -12.56 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: 0.15 Total: -46.78 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -33.94 -7.81 -41.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260518816.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.045 kcal (2) G-P(sol) polarization free energy of solvation -33.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds