Wall clock time and date at job start Mon Mar 30 2020 02:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47314 * 2 1 4 4 C 1.50702 * 109.47089 * 120.00341 * 2 1 3 5 5 H 1.08002 * 120.00091 * 120.00462 * 4 2 1 6 6 C 1.37878 * 119.99893 * 299.99413 * 4 2 1 7 7 N 1.31513 * 119.99943 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 119.99964 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47568 * 89.99562 * 8 6 4 10 10 H 1.48497 * 109.46974 * 209.99517 * 8 6 4 11 11 H 1.48500 * 109.47062 * 329.98973 * 8 6 4 12 12 C 1.50702 * 109.47122 * 240.00116 * 2 1 3 13 13 C 1.35362 * 126.01765 * 324.94418 * 12 2 1 14 14 N 1.37194 * 106.73795 * 180.02562 * 13 12 2 15 15 C 1.35131 * 107.17545 * 359.89030 * 14 13 12 16 16 N 1.30908 * 108.78830 * 0.17978 * 15 14 13 17 17 C 1.51566 * 109.76936 * 180.16091 * 15 14 13 18 18 C 1.54541 * 104.35248 * 16.64714 * 17 15 14 19 19 C 1.47016 * 141.59545 * 179.86661 * 14 13 12 20 20 H 1.08999 * 109.46825 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.46830 * 299.99540 * 1 2 3 22 22 H 1.08997 * 109.47238 * 59.99858 * 1 2 3 23 23 H 0.97005 * 119.99883 * 180.02562 * 7 6 4 24 24 H 1.07999 * 126.67745 * 0.13257 * 13 12 2 25 25 H 1.09002 * 110.47981 * 257.89119 * 17 15 14 26 26 H 1.09004 * 110.47953 * 135.40056 * 17 15 14 27 27 H 1.08999 * 110.96682 * 92.87547 * 18 17 15 28 28 H 1.09001 * 110.96306 * 216.63039 * 18 17 15 29 29 H 1.08998 * 110.23165 * 43.97064 * 19 14 13 30 30 H 1.08993 * 110.23621 * 282.00026 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1381 -0.8591 3.5565 8 14 0.6249 1.2790 2.6542 9 1 -0.8027 0.8728 2.6998 10 1 0.9761 1.9950 3.9069 11 1 0.8474 2.1766 1.4922 12 6 2.0324 -0.7104 -1.2305 13 6 1.4527 -1.7796 -1.8247 14 7 2.2343 -2.1033 -2.9048 15 6 3.2588 -1.2226 -2.9342 16 7 3.1320 -0.3945 -1.9283 17 6 4.1616 -1.5256 -4.1134 18 6 3.3081 -2.4357 -5.0253 19 6 2.3269 -3.0649 -4.0130 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.9035 -0.5279 4.4375 24 1 0.5487 -2.2805 -1.5111 25 1 5.0580 -2.0501 -3.7825 26 1 4.4292 -0.6065 -4.6348 27 1 2.7744 -1.8486 -5.7727 28 1 3.9236 -3.2004 -5.4990 29 1 1.3488 -3.2050 -4.4732 30 1 2.7154 -4.0178 -3.6538 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260518830.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:49 Heat of formation + Delta-G solvation = 45.080731 kcal Electronic energy + Delta-G solvation = -13222.827657 eV Core-core repulsion = 11018.404015 eV Total energy + Delta-G solvation = -2204.423643 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.16373 -37.74770 -35.76070 -33.39462 -32.64539 -28.76683 -27.94375 -27.06978 -24.19941 -22.31707 -20.78436 -20.49677 -18.70260 -17.71849 -16.92691 -16.67713 -15.46669 -15.07501 -14.75572 -14.54031 -14.14112 -14.02528 -13.76761 -13.53993 -12.97953 -12.80349 -12.41725 -12.31779 -11.96570 -11.82855 -11.36337 -11.26033 -10.74422 -10.67370 -10.31071 -8.95340 -8.29120 -6.33075 1.19681 1.30581 1.38810 1.50243 2.00270 2.29234 2.34268 3.01563 3.09757 3.60500 3.85445 4.00663 4.28381 4.36022 4.49458 4.61718 4.63865 4.72557 4.82455 4.90989 4.99152 5.05719 5.15908 5.18186 5.44293 5.60818 5.65274 6.00911 6.33214 6.38172 6.70298 7.30186 7.37276 8.88377 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.063746 B = 0.008280 C = 0.008118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.138181 B = 3380.782889 C = 3448.318680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.085 3.915 3 H 0.019 0.981 4 C -0.505 4.505 5 H 0.018 0.982 6 C 0.011 3.989 7 N -0.951 5.951 8 Si 0.957 3.043 9 H -0.254 1.254 10 H -0.295 1.295 11 H -0.254 1.254 12 C 0.022 3.978 13 C -0.050 4.050 14 N -0.487 5.487 15 C 0.158 3.842 16 N -0.537 5.537 17 C -0.038 4.038 18 C -0.109 4.109 19 C 0.092 3.908 20 H 0.061 0.939 21 H 0.038 0.962 22 H 0.060 0.940 23 H 0.267 0.733 24 H 0.182 0.818 25 H 0.102 0.898 26 H 0.105 0.895 27 H 0.099 0.901 28 H 0.137 0.863 29 H 0.107 0.893 30 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.776 -3.891 -19.650 20.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.065 3.935 3 H 0.037 0.963 4 C -0.544 4.544 5 H 0.036 0.964 6 C -0.186 4.186 7 N -0.592 5.592 8 Si 0.783 3.217 9 H -0.180 1.180 10 H -0.223 1.223 11 H -0.178 1.178 12 C -0.107 4.107 13 C -0.181 4.181 14 N -0.172 5.172 15 C -0.105 4.105 16 N -0.258 5.258 17 C -0.078 4.078 18 C -0.146 4.146 19 C -0.028 4.028 20 H 0.080 0.920 21 H 0.056 0.944 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.199 0.801 25 H 0.121 0.879 26 H 0.123 0.877 27 H 0.117 0.883 28 H 0.155 0.845 29 H 0.125 0.875 30 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.415 -3.474 -19.355 19.715 hybrid contribution -0.741 -0.136 0.995 1.248 sum -2.156 -3.610 -18.359 18.834 Atomic orbital electron populations 1.21999 0.95734 1.01679 0.99741 1.17444 0.93227 0.94362 0.88479 0.96259 1.21068 1.30855 1.11960 0.90488 0.96369 1.25902 0.97478 1.00222 0.94965 1.70052 1.47830 1.42733 0.98587 0.85729 0.79356 0.79485 0.77141 1.17963 1.22302 1.17817 1.21064 0.93441 0.98101 0.98051 1.22345 1.01483 1.02012 0.92268 1.46728 1.21256 1.26758 1.22505 1.25396 0.94257 0.91266 0.99555 1.69645 1.20327 1.28781 1.07020 1.20895 0.96010 1.02284 0.88563 1.22797 0.96418 0.99633 0.95775 1.22791 1.03588 0.91577 0.84828 0.91991 0.94392 0.92143 0.92392 0.80099 0.87950 0.87652 0.88269 0.84461 0.87495 0.88507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.95 8.26 71.98 0.59 -5.35 16 2 C 0.08 4.52 2.35 -12.28 -0.03 4.49 16 3 H 0.02 1.09 7.20 -2.39 -0.02 1.07 16 4 C -0.51 -31.76 9.13 25.60 0.23 -31.53 16 5 H 0.02 1.28 7.98 -2.91 -0.02 1.26 16 6 C 0.01 0.66 5.45 84.66 0.46 1.13 16 7 N -0.95 -62.50 13.96 21.45 0.30 -62.21 16 8 Si 0.96 47.43 24.37 68.60 1.67 49.10 16 9 H -0.25 -11.53 6.87 99.48 0.68 -10.85 16 10 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 11 H -0.25 -12.06 6.53 99.48 0.65 -11.41 16 12 C 0.02 1.09 5.97 41.56 0.25 1.34 16 13 C -0.05 -2.04 11.22 83.19 0.93 -1.11 16 14 N -0.49 -16.11 3.61 -508.17 -1.84 -17.95 16 15 C 0.16 5.80 8.59 138.26 1.19 6.99 16 16 N -0.54 -26.14 11.26 -174.70 -1.97 -28.11 16 17 C -0.04 -0.80 6.85 30.65 0.21 -0.59 16 18 C -0.11 -1.27 7.17 31.59 0.23 -1.05 16 19 C 0.09 1.66 7.78 86.75 0.67 2.33 16 20 H 0.06 2.58 7.29 -2.39 -0.02 2.56 16 21 H 0.04 1.69 3.27 -2.39 -0.01 1.68 16 22 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 23 H 0.27 16.27 8.31 -92.70 -0.77 15.50 16 24 H 0.18 6.57 7.40 -2.91 -0.02 6.55 16 25 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.11 1.92 8.14 -2.38 -0.02 1.91 16 27 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.14 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.10 1.52 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -83.30 244.92 3.95 -79.34 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: 1.05 Total: 3.16 kcal Atomic # 6 Polarization: -28.09 SS G_CDS: 4.74 Total: -23.35 kcal Atomic # 7 Polarization: -104.76 SS G_CDS: -3.50 Total: -108.26 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 1.67 Total: 49.10 kcal Total: -83.30 3.95 -79.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260518830.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.425 kcal (2) G-P(sol) polarization free energy of solvation -83.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds