Wall clock time and date at job start Mon Mar 30 2020 02:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31807 * 119.12284 * 2 1 4 4 C 1.32320 * 120.81575 * 180.02562 * 3 2 1 5 5 C 1.38616 * 119.10621 * 0.02562 * 4 3 2 6 6 C 1.38583 * 118.39950 * 0.02562 * 5 4 3 7 7 C 1.50693 * 120.44625 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47328 * 303.54204 * 7 6 5 9 9 C 1.52997 * 109.47471 * 63.54697 * 7 6 5 10 10 C 1.50702 * 109.46861 * 183.54190 * 7 6 5 11 11 H 1.07999 * 120.00434 * 235.27996 * 10 7 6 12 12 C 1.37884 * 120.00045 * 55.28375 * 10 7 6 13 13 N 1.31511 * 120.00135 * 191.16740 * 12 10 7 14 14 Si 1.86798 * 119.99792 * 11.16368 * 12 10 7 15 15 H 1.48501 * 109.47072 * 84.65418 * 14 12 10 16 16 H 1.48496 * 109.47615 * 204.65686 * 14 12 10 17 17 H 1.48502 * 109.47233 * 324.65990 * 14 12 10 18 18 N 1.31779 * 119.12024 * 180.02562 * 2 1 3 19 19 H 1.09004 * 109.46399 * 269.97283 * 1 2 3 20 20 H 1.09001 * 109.46797 * 29.97183 * 1 2 3 21 21 H 1.08995 * 109.47213 * 149.97499 * 1 2 3 22 22 H 1.07997 * 120.44666 * 180.28147 * 4 3 2 23 23 H 1.08006 * 120.80574 * 180.02562 * 5 4 3 24 24 H 1.09004 * 109.46991 * 66.18515 * 8 7 6 25 25 H 1.08997 * 109.47147 * 186.18077 * 8 7 6 26 26 H 1.08998 * 109.46834 * 306.18426 * 8 7 6 27 27 H 1.09000 * 109.47416 * 59.99641 * 9 7 6 28 28 H 1.09000 * 109.47160 * 179.97438 * 9 7 6 29 29 H 1.08998 * 109.46889 * 299.99690 * 9 7 6 30 30 H 0.96999 * 119.99982 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1485 1.1514 0.0000 4 6 3.4712 1.1905 -0.0005 5 6 4.1809 -0.0001 -0.0016 6 6 3.4713 -1.1905 -0.0026 7 6 4.1961 -2.5116 -0.0044 8 6 5.1398 -2.5740 -1.2071 9 6 5.0054 -2.6512 1.2865 10 6 3.1944 -3.6340 -0.0930 11 1 3.1911 -4.4151 0.6529 12 6 2.2822 -3.6639 -1.1265 13 7 1.2745 -4.5081 -1.0899 14 14 2.4776 -2.5052 -2.5786 15 1 3.4125 -3.1022 -3.5660 16 1 1.1557 -2.2858 -3.2184 17 1 3.0204 -1.2063 -2.1058 18 7 2.1483 -1.1512 -0.0005 19 1 -0.3632 -0.0005 1.0277 20 1 -0.3633 0.8903 -0.5134 21 1 -0.3633 -0.8897 -0.5142 22 1 3.9907 2.1373 0.0041 23 1 5.2610 -0.0003 -0.0016 24 1 5.9299 -1.8326 -1.0879 25 1 5.5814 -3.5685 -1.2712 26 1 4.5803 -2.3655 -2.1190 27 1 4.3331 -2.6067 2.1434 28 1 5.5293 -3.6070 1.2854 29 1 5.7299 -1.8394 1.3507 30 1 0.6325 -4.5289 -1.8168 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260583838.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:23 Heat of formation + Delta-G solvation = 57.446195 kcal Electronic energy + Delta-G solvation = -13918.428839 eV Core-core repulsion = 11714.541403 eV Total energy + Delta-G solvation = -2203.887436 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.51019 -36.20526 -32.80538 -32.03394 -31.17900 -27.84726 -26.59208 -25.07752 -23.73687 -22.00494 -19.18244 -17.12411 -16.65087 -15.34784 -14.90158 -14.46538 -14.31762 -13.28058 -12.91067 -12.81408 -12.42528 -12.32609 -11.99222 -11.88639 -11.43675 -11.04884 -10.67739 -10.43381 -10.18507 -10.10511 -9.64558 -9.26146 -9.01777 -8.54570 -8.42676 -8.14085 -6.00084 -3.98509 1.60954 1.86348 3.30705 3.36272 3.43784 4.44816 4.55426 4.60364 4.84620 5.13173 5.47250 5.62905 5.82706 5.88930 5.97164 6.00406 6.02932 6.19202 6.29597 6.37801 6.40319 6.60272 6.62909 6.70172 6.96078 7.16513 7.29301 7.66510 7.91603 8.53402 8.93367 9.05205 9.67473 11.12719 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.027093 B = 0.019773 C = 0.014877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.239156 B = 1415.761335 C = 1881.599857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.297 3.703 3 N -0.544 5.544 4 C 0.134 3.866 5 C -0.252 4.252 6 C 0.222 3.778 7 C 0.069 3.931 8 C -0.139 4.139 9 C -0.115 4.115 10 C -0.506 4.506 11 H 0.076 0.924 12 C 0.110 3.890 13 N -0.890 5.890 14 Si 0.895 3.105 15 H -0.294 1.294 16 H -0.302 1.302 17 H -0.277 1.277 18 N -0.469 5.469 19 H 0.080 0.920 20 H 0.075 0.925 21 H 0.084 0.916 22 H 0.155 0.845 23 H 0.135 0.865 24 H 0.034 0.966 25 H 0.065 0.935 26 H 0.038 0.962 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.034 0.966 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.531 8.639 1.300 9.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.030 3.970 3 N -0.260 5.260 4 C -0.032 4.032 5 C -0.275 4.275 6 C 0.076 3.924 7 C 0.067 3.933 8 C -0.197 4.197 9 C -0.173 4.173 10 C -0.543 4.543 11 H 0.094 0.906 12 C -0.093 4.093 13 N -0.527 5.527 14 Si 0.729 3.271 15 H -0.223 1.223 16 H -0.230 1.230 17 H -0.204 1.204 18 N -0.182 5.182 19 H 0.099 0.901 20 H 0.094 0.906 21 H 0.103 0.897 22 H 0.172 0.828 23 H 0.153 0.847 24 H 0.053 0.947 25 H 0.084 0.916 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.344 8.547 1.223 9.259 hybrid contribution 0.969 0.777 -0.975 1.579 sum 4.313 9.324 0.247 10.276 Atomic orbital electron populations 1.20474 0.86745 1.03421 1.03295 1.23326 0.98093 0.84022 0.91597 1.68102 1.10005 1.31054 1.16868 1.22935 0.90014 0.97984 0.92258 1.22750 1.02363 0.94885 1.07472 1.22518 0.89569 0.96481 0.83790 1.17729 0.93279 0.89224 0.93038 1.22222 0.98065 1.01031 0.98361 1.21640 0.98213 1.00260 0.97172 1.20516 1.14245 1.07520 1.12027 0.90553 1.24713 0.93684 0.93436 0.97481 1.69911 1.12752 1.37790 1.32207 0.87105 0.75510 0.81697 0.82799 1.22286 1.23023 1.20378 1.68441 1.10256 1.27843 1.11707 0.90142 0.90648 0.89719 0.82805 0.84663 0.94693 0.91639 0.94355 0.93317 0.92274 0.94730 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 10.32 36.01 0.37 -1.07 16 2 C 0.30 6.41 7.64 -157.19 -1.20 5.21 16 3 N -0.54 -10.85 10.33 -10.72 -0.11 -10.96 16 4 C 0.13 2.36 11.31 -17.20 -0.19 2.17 16 5 C -0.25 -4.75 8.84 -39.31 -0.35 -5.10 16 6 C 0.22 5.03 3.03 -82.24 -0.25 4.78 16 7 C 0.07 1.57 0.59 -156.82 -0.09 1.48 16 8 C -0.14 -2.89 7.63 37.16 0.28 -2.61 16 9 C -0.11 -2.21 8.27 37.16 0.31 -1.90 16 10 C -0.51 -13.98 8.24 -34.44 -0.28 -14.27 16 11 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 12 C 0.11 3.18 4.73 -17.82 -0.08 3.10 16 13 N -0.89 -27.20 13.96 55.43 0.77 -26.43 16 14 Si 0.89 23.43 22.21 -169.99 -3.78 19.65 16 15 H -0.29 -7.55 7.04 56.52 0.40 -7.16 16 16 H -0.30 -8.10 7.11 56.52 0.40 -7.70 16 17 H -0.28 -7.05 4.65 56.52 0.26 -6.79 16 18 N -0.47 -11.42 6.15 -6.99 -0.04 -11.46 16 19 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 20 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 21 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 22 H 0.15 2.03 8.06 -52.49 -0.42 1.61 16 23 H 0.14 2.11 7.35 -52.48 -0.39 1.73 16 24 H 0.03 0.60 7.51 -51.93 -0.39 0.21 16 25 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.04 0.86 3.34 -51.93 -0.17 0.69 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.03 0.55 7.68 -51.93 -0.40 0.16 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 241.14 15.07 3.63 3.63 Total: -1.00 -32.05 241.14 -5.02 -37.07 By element: Atomic # 1 Polarization: 0.70 SS G_CDS: -4.00 Total: -3.30 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -1.49 Total: -8.20 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: 0.62 Total: -48.85 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -3.78 Total: 19.65 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -32.05 -5.02 -37.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260583838.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.515 kcal (2) G-P(sol) polarization free energy of solvation -32.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds