Wall clock time and date at job start Mon Mar 30 2020 02:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.42586 * 2 1 4 4 C 1.53025 * 109.42509 * 119.88832 * 2 1 3 5 5 C 1.53389 * 109.71476 * 191.77109 * 4 2 1 6 6 C 1.50884 * 108.19299 * 309.47003 * 5 4 2 7 7 C 1.34570 * 128.32096 * 196.65527 * 6 5 4 8 8 N 1.35200 * 107.61463 * 179.72919 * 7 6 5 9 9 H 0.97006 * 126.00374 * 180.02562 * 8 7 6 10 10 N 1.40311 * 107.99334 * 0.03136 * 8 7 6 11 11 C 1.30133 * 108.12246 * 0.05059 * 10 8 7 12 12 C 1.50950 * 128.28438 * 179.62703 * 11 10 8 13 13 H 1.08995 * 109.71798 * 77.14913 * 12 11 10 14 14 C 1.50701 * 109.71292 * 316.50864 * 12 11 10 15 15 H 1.08005 * 120.00080 * 275.48205 * 14 12 11 16 16 C 1.37881 * 120.00336 * 95.48228 * 14 12 11 17 17 N 1.31510 * 120.00277 * 185.36678 * 16 14 12 18 18 Si 1.86807 * 119.99513 * 5.36710 * 16 14 12 19 19 H 1.48503 * 109.47041 * 84.82058 * 18 16 14 20 20 H 1.48497 * 109.46958 * 204.81572 * 18 16 14 21 21 H 1.48496 * 109.47345 * 324.82114 * 18 16 14 22 22 H 1.09007 * 109.47297 * 300.10955 * 1 2 3 23 23 H 1.08997 * 109.47668 * 60.11143 * 1 2 3 24 24 H 1.09008 * 109.47339 * 180.11231 * 1 2 3 25 25 H 1.08998 * 109.43648 * 71.69783 * 4 2 1 26 26 H 1.08995 * 109.43041 * 311.84620 * 4 2 1 27 27 H 1.08999 * 109.71858 * 189.79089 * 5 4 2 28 28 H 1.09005 * 109.72027 * 69.14724 * 5 4 2 29 29 H 1.07998 * 126.19662 * 359.68574 * 7 6 5 30 30 H 0.97000 * 119.99938 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8924 1.0279 0.0000 4 6 2.0388 -0.7191 1.2512 5 6 3.5441 -0.4726 1.4135 6 6 4.2178 -0.7914 0.1015 7 6 5.5241 -1.0131 -0.1334 8 7 5.6651 -1.2656 -1.4541 9 1 6.4979 -1.4616 -1.9115 10 7 4.3955 -1.1943 -2.0471 11 6 3.5302 -0.9093 -1.1178 12 6 2.0391 -0.7185 -1.2550 13 1 1.5508 -1.6889 -1.3439 14 6 1.7434 0.1140 -2.4759 15 1 1.7765 1.1919 -2.4156 16 6 1.4305 -0.5003 -3.6701 17 7 1.2762 0.2200 -4.7595 18 14 1.2259 -2.3558 -3.7403 19 1 -0.1612 -2.7159 -3.3510 20 1 1.4914 -2.8311 -5.1219 21 1 2.1846 -2.9954 -2.8039 22 1 -0.3634 0.5156 0.8890 23 1 -0.3634 0.5121 -0.8909 24 1 -0.3634 -1.0277 0.0020 25 1 1.8551 -1.7891 1.1545 26 1 1.5127 -0.3393 2.1269 27 1 3.9402 -1.1187 2.1969 28 1 3.7199 0.5713 1.6732 29 1 6.3166 -0.9924 0.6000 30 1 1.0565 -0.2122 -5.5996 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260904209.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:23 Heat of formation + Delta-G solvation = 31.086782 kcal Electronic energy + Delta-G solvation = -13711.673117 eV Core-core repulsion = 11506.642651 eV Total energy + Delta-G solvation = -2205.030466 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.09006 -38.14496 -34.83626 -32.92348 -32.26658 -29.75440 -28.44923 -25.71276 -23.73645 -21.62590 -21.34533 -19.51038 -18.99579 -18.20437 -16.46942 -15.68580 -15.27159 -15.11123 -14.80706 -14.51619 -14.04603 -13.71524 -13.51871 -12.84060 -12.76680 -12.47531 -12.28465 -11.96807 -11.74117 -11.55266 -11.40555 -11.16418 -10.66705 -10.56915 -10.00389 -9.08627 -8.26615 -6.27166 1.26685 1.28425 1.34922 1.45697 2.11910 2.31382 2.38722 3.14838 3.89415 4.17205 4.22715 4.30922 4.59537 4.69738 4.81351 4.85182 4.94122 5.05813 5.12634 5.22468 5.23852 5.35765 5.47452 5.55543 5.59735 5.77407 5.80907 6.04235 6.33552 6.74121 6.79503 7.15946 7.39353 8.90850 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.028199 B = 0.016312 C = 0.012054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.716721 B = 1716.145059 C = 2322.230354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.073 4.073 3 H 0.048 0.952 4 C -0.109 4.109 5 C -0.030 4.030 6 C -0.272 4.272 7 C 0.064 3.936 8 N -0.497 5.497 9 H 0.444 0.556 10 N -0.336 5.336 11 C 0.081 3.919 12 C 0.085 3.915 13 H 0.039 0.961 14 C -0.488 4.488 15 H 0.029 0.971 16 C 0.029 3.971 17 N -0.949 5.949 18 Si 0.932 3.068 19 H -0.259 1.259 20 H -0.294 1.294 21 H -0.260 1.260 22 H 0.073 0.927 23 H 0.035 0.965 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.220 0.780 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.963 -4.530 14.655 16.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.092 4.092 3 H 0.066 0.934 4 C -0.147 4.147 5 C -0.068 4.068 6 C -0.284 4.284 7 C -0.082 4.082 8 N -0.206 5.206 9 H 0.289 0.711 10 N -0.158 5.158 11 C -0.088 4.088 12 C 0.065 3.935 13 H 0.057 0.943 14 C -0.527 4.527 15 H 0.047 0.953 16 C -0.168 4.168 17 N -0.590 5.590 18 Si 0.758 3.242 19 H -0.184 1.184 20 H -0.221 1.221 21 H -0.184 1.184 22 H 0.092 0.908 23 H 0.055 0.945 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.108 0.892 27 H 0.111 0.889 28 H 0.089 0.911 29 H 0.237 0.763 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.100 -4.785 13.239 15.342 hybrid contribution 0.299 -0.395 -0.597 0.776 sum 6.399 -5.180 12.643 15.087 Atomic orbital electron populations 1.21682 0.94730 1.01346 1.01239 1.21050 0.95993 0.98533 0.93660 0.93356 1.21660 0.95856 1.00077 0.97094 1.19995 0.93773 1.01442 0.91576 1.20702 0.93556 1.16833 0.97297 1.22649 0.98466 1.00033 0.87003 1.46546 1.08445 1.58617 1.07012 0.71109 1.77115 0.89844 1.26195 1.22632 1.23429 0.98304 0.95931 0.91096 1.17941 0.84883 0.95714 0.95000 0.94314 1.20914 1.45247 0.92730 0.93769 0.95290 1.25679 0.94309 1.01829 0.94996 1.70042 1.50963 1.37688 1.00261 0.85942 0.79311 0.81979 0.76982 1.18372 1.22102 1.18450 0.90797 0.94549 0.93075 0.92643 0.89211 0.88901 0.91062 0.76318 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.75 9.01 71.98 0.65 -4.11 16 2 C -0.07 -2.85 2.10 -10.68 -0.02 -2.87 16 3 H 0.05 2.01 8.07 -2.39 -0.02 1.99 16 4 C -0.11 -3.20 5.18 30.73 0.16 -3.05 16 5 C -0.03 -0.80 6.28 30.04 0.19 -0.61 16 6 C -0.27 -9.61 5.89 -20.10 -0.12 -9.73 16 7 C 0.06 1.84 11.95 83.33 1.00 2.84 16 8 N -0.50 -17.03 7.37 -57.88 -0.43 -17.46 16 9 H 0.44 11.54 8.96 -213.18 -1.91 9.62 16 10 N -0.34 -16.18 12.58 -47.14 -0.59 -16.78 16 11 C 0.08 3.78 6.42 43.44 0.28 4.06 16 12 C 0.09 4.16 1.55 -12.10 -0.02 4.14 16 13 H 0.04 1.94 5.29 -2.39 -0.01 1.92 16 14 C -0.49 -28.97 8.02 25.60 0.21 -28.76 16 15 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 16 C 0.03 1.78 5.47 84.66 0.46 2.24 16 17 N -0.95 -62.05 13.96 21.45 0.30 -61.75 16 18 Si 0.93 48.21 27.01 68.60 1.85 50.06 16 19 H -0.26 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.29 -15.22 7.11 99.48 0.71 -14.51 16 21 H -0.26 -13.30 6.80 99.48 0.68 -12.63 16 22 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 23 H 0.04 1.51 7.55 -2.39 -0.02 1.49 16 24 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 25 H 0.05 1.65 8.10 -2.39 -0.02 1.63 16 26 H 0.09 2.04 8.09 -2.39 -0.02 2.02 16 27 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 29 H 0.22 3.57 8.06 -2.91 -0.02 3.54 16 30 H 0.26 16.19 8.31 -92.71 -0.77 15.42 16 Total: -1.00 -76.79 246.87 3.11 -73.68 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -0.80 Total: 8.09 kcal Atomic # 6 Polarization: -38.63 SS G_CDS: 2.78 Total: -35.85 kcal Atomic # 7 Polarization: -95.26 SS G_CDS: -0.72 Total: -95.98 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 1.85 Total: 50.06 kcal Total: -76.79 3.11 -73.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260904209.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.768 kcal (2) G-P(sol) polarization free energy of solvation -76.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds