Wall clock time and date at job start Mon Mar 30 2020 02:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34952 * 126.04258 * 2 1 4 4 C 1.35315 * 107.74906 * 179.75667 * 3 2 1 5 5 C 1.50692 * 126.04083 * 180.27692 * 4 3 2 6 6 C 1.53004 * 117.50011 * 8.76126 * 5 4 3 7 7 C 1.52997 * 60.00245 * 252.51403 * 6 5 4 8 8 C 1.39869 * 107.91698 * 0.39581 * 4 3 2 9 9 C 1.50706 * 125.89747 * 179.86206 * 8 4 3 10 10 C 1.50698 * 109.47294 * 269.72115 * 9 8 4 11 11 H 1.08005 * 119.99819 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00046 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99944 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99979 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47454 * 59.99696 * 14 12 10 16 16 H 1.48506 * 109.47297 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46926 * 299.99488 * 14 12 10 18 18 N 1.30837 * 108.20680 * 359.60249 * 8 4 3 19 19 H 1.09003 * 109.46424 * 269.97279 * 1 2 3 20 20 H 1.08997 * 109.46851 * 29.96412 * 1 2 3 21 21 H 1.08995 * 109.47234 * 149.97025 * 1 2 3 22 22 H 1.08003 * 126.12063 * 0.02562 * 3 2 1 23 23 H 1.08993 * 115.55455 * 154.47085 * 5 4 3 24 24 H 1.09008 * 117.49464 * 0.02562 * 6 5 4 25 25 H 1.09001 * 117.49791 * 145.01761 * 6 5 4 26 26 H 1.09002 * 117.49390 * 252.51198 * 7 6 5 27 27 H 1.08998 * 117.50331 * 107.48842 * 7 6 5 28 28 H 1.09001 * 109.46953 * 29.71557 * 9 8 4 29 29 H 1.09000 * 109.47318 * 149.71155 * 9 8 4 30 30 H 0.96997 * 119.99752 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2591 1.0912 0.0000 4 6 3.5438 0.6665 0.0055 5 6 4.7681 1.5451 0.0134 6 6 4.5589 3.0463 0.2222 7 6 4.9504 2.5131 -1.1574 8 6 3.5347 -0.7322 -0.0003 9 6 4.7497 -1.6238 0.0000 10 6 5.1551 -1.9208 -1.4207 11 1 4.5893 -1.5058 -2.2417 12 6 6.2477 -2.7232 -1.6724 13 7 6.9364 -3.2290 -0.6726 14 14 6.7499 -3.0919 -3.4334 15 1 7.0687 -1.8217 -4.1336 16 1 7.9472 -3.9704 -3.4332 17 1 5.6333 -3.7764 -4.1335 18 7 2.2891 -1.1328 -0.0002 19 1 -0.3632 -0.0005 1.0277 20 1 -0.3633 0.8903 -0.5133 21 1 -0.3633 -0.8897 -0.5143 22 1 1.9282 2.1193 0.0004 23 1 5.6653 1.0975 0.4407 24 1 3.5357 3.3983 0.3543 25 1 5.3186 3.5865 0.7872 26 1 5.9677 2.7026 -1.5000 27 1 4.1849 2.5144 -1.9333 28 1 5.5690 -1.1213 0.5141 29 1 4.5160 -2.5563 0.5137 30 1 7.7053 -3.7931 -0.8497 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260926354.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:11 Heat of formation + Delta-G solvation = 93.124772 kcal Electronic energy + Delta-G solvation = -13042.622135 eV Core-core repulsion = 10840.281838 eV Total energy + Delta-G solvation = -2202.340297 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.54357 -36.52894 -33.71760 -32.23848 -29.37559 -28.59003 -25.71667 -23.02044 -22.22871 -21.85870 -19.26385 -18.56638 -16.42769 -16.20554 -14.86946 -14.68712 -14.44763 -13.91182 -13.31623 -12.60246 -12.55228 -12.17741 -11.72561 -11.27144 -11.18971 -11.09674 -10.67596 -10.61827 -10.18729 -10.11181 -9.81259 -9.47020 -9.35836 -8.32684 -8.29546 -7.46899 -5.95859 -3.97133 2.52263 3.15989 3.38617 3.41534 3.44160 3.61249 4.48389 4.56049 4.94421 5.19718 5.30953 5.36785 5.39833 5.41695 5.57222 5.61699 5.84783 5.95634 6.23207 6.33239 6.47807 6.50145 6.59473 6.97992 7.46153 7.59634 7.69247 7.72258 8.00643 8.40841 8.66939 9.05007 9.64767 11.14896 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.028246 B = 0.010328 C = 0.008603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.061559 B = 2710.535789 C = 3253.797233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.398 5.398 3 C 0.035 3.965 4 C -0.200 4.200 5 C -0.052 4.052 6 C -0.190 4.190 7 C -0.173 4.173 8 C 0.130 3.870 9 C 0.090 3.910 10 C -0.500 4.500 11 H 0.054 0.946 12 C 0.059 3.941 13 N -0.896 5.896 14 Si 0.895 3.105 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.278 1.278 18 N -0.309 5.309 19 H 0.064 0.936 20 H 0.076 0.924 21 H 0.083 0.917 22 H 0.159 0.841 23 H 0.114 0.886 24 H 0.085 0.915 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.040 0.960 29 H 0.033 0.967 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.131 10.776 1.313 13.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.179 5.179 3 C -0.110 4.110 4 C -0.211 4.211 5 C -0.071 4.071 6 C -0.227 4.227 7 C -0.211 4.211 8 C -0.037 4.037 9 C 0.052 3.948 10 C -0.540 4.540 11 H 0.073 0.927 12 C -0.142 4.142 13 N -0.535 5.535 14 Si 0.723 3.277 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.203 1.203 18 N -0.130 5.130 19 H 0.083 0.917 20 H 0.095 0.905 21 H 0.101 0.899 22 H 0.176 0.824 23 H 0.132 0.868 24 H 0.103 0.897 25 H 0.108 0.892 26 H 0.110 0.890 27 H 0.106 0.894 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.976 9.665 1.360 13.260 hybrid contribution 0.663 0.571 -1.024 1.346 sum -8.314 10.236 0.337 13.191 Atomic orbital electron populations 1.21605 0.75616 1.03545 1.02306 1.48316 1.05846 1.04334 1.59433 1.21961 0.91178 0.92670 1.05169 1.19222 0.92300 0.93712 1.15911 1.20130 0.96894 0.88286 1.01786 1.22966 1.01671 0.97510 1.00583 1.22922 1.02158 1.04527 0.91462 1.23196 0.93972 0.93340 0.93156 1.17805 0.86253 0.92651 0.98139 1.20892 1.11991 1.29811 0.91282 0.92735 1.24945 0.96325 0.95815 0.97144 1.69943 1.19200 1.33795 1.30607 0.86599 0.77847 0.78250 0.84988 1.20199 1.21268 1.20315 1.77445 1.01768 1.06481 1.27321 0.91736 0.90542 0.89860 0.82384 0.86802 0.89657 0.89179 0.88989 0.89398 0.94212 0.94886 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.37 11.47 59.85 0.69 2.05 16 2 N -0.40 -7.29 4.01 -68.16 -0.27 -7.57 16 3 C 0.04 0.61 10.81 -17.22 -0.19 0.42 16 4 C -0.20 -4.09 5.77 -105.06 -0.61 -4.69 16 5 C -0.05 -0.94 6.01 -91.77 -0.55 -1.49 16 6 C -0.19 -2.65 10.01 -26.73 -0.27 -2.92 16 7 C -0.17 -2.73 10.23 -26.73 -0.27 -3.00 16 8 C 0.13 3.15 6.41 -82.40 -0.53 2.62 16 9 C 0.09 2.46 5.35 -29.03 -0.16 2.31 16 10 C -0.50 -14.56 9.09 -34.44 -0.31 -14.87 16 11 H 0.05 1.61 7.74 -52.48 -0.41 1.20 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 14 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 N -0.31 -7.23 12.58 33.67 0.42 -6.81 16 19 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 20 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 21 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 22 H 0.16 2.08 7.13 -52.48 -0.37 1.71 16 23 H 0.11 2.20 7.52 -51.93 -0.39 1.81 16 24 H 0.08 1.06 6.95 -51.92 -0.36 0.70 16 25 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.04 1.09 7.44 -51.93 -0.39 0.71 16 29 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 263.42 15.07 3.97 3.97 Total: -1.00 -32.75 263.42 -6.47 -39.21 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: -4.01 Total: -1.83 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -2.29 Total: -17.97 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 0.89 Total: -40.48 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -32.75 -6.47 -39.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260926354.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.339 kcal (2) G-P(sol) polarization free energy of solvation -32.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds