Wall clock time and date at job start Mon Mar 30 2020 02:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34952 * 126.04258 * 2 1 4 4 C 1.35315 * 107.74906 * 179.75667 * 3 2 1 5 5 C 1.50692 * 126.04083 * 180.27692 * 4 3 2 6 6 C 1.53004 * 117.50011 * 8.76126 * 5 4 3 7 7 C 1.52997 * 60.00245 * 252.51403 * 6 5 4 8 8 C 1.39869 * 107.91698 * 0.39581 * 4 3 2 9 9 C 1.50706 * 125.89747 * 179.86206 * 8 4 3 10 10 C 1.50698 * 109.47294 * 269.72115 * 9 8 4 11 11 H 1.08005 * 119.99819 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00046 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99944 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99979 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47454 * 59.99696 * 14 12 10 16 16 H 1.48506 * 109.47297 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46926 * 299.99488 * 14 12 10 18 18 N 1.30837 * 108.20680 * 359.60249 * 8 4 3 19 19 H 1.09003 * 109.46424 * 269.97279 * 1 2 3 20 20 H 1.08997 * 109.46851 * 29.96412 * 1 2 3 21 21 H 1.08995 * 109.47234 * 149.97025 * 1 2 3 22 22 H 1.08003 * 126.12063 * 0.02562 * 3 2 1 23 23 H 1.08993 * 115.55455 * 154.47085 * 5 4 3 24 24 H 1.09008 * 117.49464 * 0.02562 * 6 5 4 25 25 H 1.09001 * 117.49791 * 145.01761 * 6 5 4 26 26 H 1.09002 * 117.49390 * 252.51198 * 7 6 5 27 27 H 1.08998 * 117.50331 * 107.48842 * 7 6 5 28 28 H 1.09001 * 109.46953 * 29.71557 * 9 8 4 29 29 H 1.09000 * 109.47318 * 149.71155 * 9 8 4 30 30 H 0.96997 * 119.99752 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2591 1.0912 0.0000 4 6 3.5438 0.6665 0.0055 5 6 4.7681 1.5451 0.0134 6 6 4.5589 3.0463 0.2222 7 6 4.9504 2.5131 -1.1574 8 6 3.5347 -0.7322 -0.0003 9 6 4.7497 -1.6238 0.0000 10 6 5.1551 -1.9208 -1.4207 11 1 4.5893 -1.5058 -2.2417 12 6 6.2477 -2.7232 -1.6724 13 7 6.9364 -3.2290 -0.6726 14 14 6.7499 -3.0919 -3.4334 15 1 7.0687 -1.8217 -4.1336 16 1 7.9472 -3.9704 -3.4332 17 1 5.6333 -3.7764 -4.1335 18 7 2.2891 -1.1328 -0.0002 19 1 -0.3632 -0.0005 1.0277 20 1 -0.3633 0.8903 -0.5133 21 1 -0.3633 -0.8897 -0.5143 22 1 1.9282 2.1193 0.0004 23 1 5.6653 1.0975 0.4407 24 1 3.5357 3.3983 0.3543 25 1 5.3186 3.5865 0.7872 26 1 5.9677 2.7026 -1.5000 27 1 4.1849 2.5144 -1.9333 28 1 5.5690 -1.1213 0.5141 29 1 4.5160 -2.5563 0.5137 30 1 7.7053 -3.7931 -0.8497 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260926354.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:11 Heat of formation + Delta-G solvation = 72.215050 kcal Electronic energy + Delta-G solvation = -13043.528849 eV Core-core repulsion = 10840.281838 eV Total energy + Delta-G solvation = -2203.247011 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.05897 -37.79305 -35.66571 -34.00831 -30.98930 -30.34291 -27.27094 -25.01825 -23.52580 -23.06593 -20.80618 -20.11876 -18.50347 -17.75276 -16.52818 -16.20324 -15.92509 -15.19114 -14.81660 -14.43893 -14.00803 -13.65914 -13.32301 -13.16314 -12.73158 -12.57435 -12.46377 -12.24553 -11.81205 -11.62244 -11.54206 -11.44143 -10.88201 -10.57446 -9.95740 -8.91685 -8.18934 -6.30504 1.08302 1.38661 1.42760 1.50600 1.87331 1.93279 2.43971 3.12100 3.25587 3.77539 3.95257 4.13704 4.18043 4.39951 4.44574 4.49230 4.69979 4.80345 4.84462 4.89114 5.09007 5.17945 5.30029 5.38732 5.52795 5.56104 5.73058 5.84099 6.19654 6.38916 6.76905 7.02262 7.36082 8.91501 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.028246 B = 0.010328 C = 0.008603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.061559 B = 2710.535789 C = 3253.797233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.389 5.389 3 C 0.060 3.940 4 C -0.223 4.223 5 C -0.092 4.092 6 C -0.148 4.148 7 C -0.175 4.175 8 C 0.091 3.909 9 C 0.103 3.897 10 C -0.518 4.518 11 H 0.045 0.955 12 C 0.007 3.993 13 N -0.929 5.929 14 Si 0.966 3.034 15 H -0.265 1.265 16 H -0.276 1.276 17 H -0.273 1.273 18 N -0.352 5.352 19 H 0.086 0.914 20 H 0.120 0.880 21 H 0.080 0.920 22 H 0.214 0.786 23 H 0.082 0.918 24 H 0.112 0.888 25 H 0.108 0.892 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.021 0.979 29 H -0.005 1.005 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.685 13.269 0.285 16.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.171 5.171 3 C -0.086 4.086 4 C -0.234 4.234 5 C -0.112 4.112 6 C -0.185 4.185 7 C -0.212 4.212 8 C -0.074 4.074 9 C 0.064 3.936 10 C -0.557 4.557 11 H 0.063 0.937 12 C -0.191 4.191 13 N -0.569 5.569 14 Si 0.790 3.210 15 H -0.189 1.189 16 H -0.201 1.201 17 H -0.198 1.198 18 N -0.175 5.175 19 H 0.105 0.895 20 H 0.138 0.862 21 H 0.099 0.901 22 H 0.231 0.769 23 H 0.100 0.900 24 H 0.131 0.869 25 H 0.126 0.874 26 H 0.112 0.888 27 H 0.109 0.891 28 H 0.039 0.961 29 H 0.013 0.987 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.543 12.155 0.340 16.094 hybrid contribution 1.031 -0.181 -0.640 1.226 sum -9.513 11.974 -0.300 15.295 Atomic orbital electron populations 1.22131 0.71989 1.05628 1.04425 1.48747 1.07750 1.03273 1.57326 1.22617 0.89604 0.94414 1.01995 1.19458 0.94667 0.92152 1.17136 1.20037 0.95475 0.90646 1.05007 1.23089 1.03716 0.93341 0.98339 1.22986 1.02620 1.03524 0.92096 1.22759 0.93315 0.95034 0.96266 1.17396 0.87803 0.91549 0.96855 1.21090 1.12459 1.30382 0.91788 0.93659 1.25869 0.96036 0.95268 1.01930 1.70068 1.19605 1.34169 1.33015 0.85488 0.77717 0.78563 0.79202 1.18948 1.20083 1.19849 1.77262 1.02151 1.09536 1.28544 0.89549 0.86169 0.90136 0.76936 0.89963 0.86935 0.87364 0.88758 0.89109 0.96123 0.98656 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.04 11.47 127.77 1.47 3.51 16 2 N -0.39 -13.44 4.01 -369.56 -1.48 -14.92 16 3 C 0.06 1.90 10.81 83.54 0.90 2.80 16 4 C -0.22 -9.07 5.77 -20.15 -0.12 -9.19 16 5 C -0.09 -3.34 6.01 -11.54 -0.07 -3.41 16 6 C -0.15 -3.62 10.01 30.59 0.31 -3.31 16 7 C -0.17 -5.20 10.23 30.60 0.31 -4.89 16 8 C 0.09 4.61 6.41 43.10 0.28 4.88 16 9 C 0.10 6.03 5.35 29.10 0.16 6.18 16 10 C -0.52 -31.62 9.09 25.60 0.23 -31.39 16 11 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 12 C 0.01 0.43 5.46 84.65 0.46 0.89 16 13 N -0.93 -57.72 13.29 21.45 0.28 -57.43 16 14 Si 0.97 46.06 29.54 68.60 2.03 48.09 16 15 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 16 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 17 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 18 N -0.35 -16.78 12.58 -47.38 -0.60 -17.38 16 19 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 20 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 21 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 22 H 0.21 4.23 7.13 -2.91 -0.02 4.21 16 23 H 0.08 3.40 7.52 -2.39 -0.02 3.39 16 24 H 0.11 2.15 6.95 -2.38 -0.02 2.13 16 25 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 27 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 28 H 0.02 1.24 7.44 -2.39 -0.02 1.23 16 29 H 0.00 -0.31 8.14 -2.39 -0.02 -0.33 16 30 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -75.82 263.42 5.28 -70.54 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: 1.12 Total: 5.02 kcal Atomic # 6 Polarization: -37.85 SS G_CDS: 3.93 Total: -33.92 kcal Atomic # 7 Polarization: -87.93 SS G_CDS: -1.79 Total: -89.73 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -75.82 5.28 -70.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260926354.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.755 kcal (2) G-P(sol) polarization free energy of solvation -75.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds