Wall clock time and date at job start Mon Mar 30 2020 02:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 C 1.38653 * 120.79087 * 299.71992 * 4 2 1 6 6 C 1.38199 * 119.16195 * 179.75163 * 5 4 2 7 7 N 1.31873 * 120.76425 * 0.53095 * 6 5 4 8 8 C 1.31864 * 121.72621 * 359.74760 * 7 6 5 9 9 C 1.38207 * 120.76533 * 359.96971 * 8 7 6 10 10 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 11 11 H 1.09002 * 109.46716 * 60.00091 * 10 2 1 12 12 N 1.46898 * 109.47548 * 179.97438 * 10 2 1 13 13 C 1.50701 * 109.47274 * 300.00322 * 10 2 1 14 14 H 1.07999 * 119.99742 * 359.97438 * 13 10 2 15 15 C 1.37878 * 120.00001 * 179.97438 * 13 10 2 16 16 N 1.31520 * 119.99833 * 179.97438 * 15 13 10 17 17 Si 1.86799 * 120.00186 * 0.02562 * 15 13 10 18 18 H 1.48498 * 109.46982 * 89.99930 * 17 15 13 19 19 H 1.48496 * 109.47225 * 209.99979 * 17 15 13 20 20 H 1.48502 * 109.47022 * 330.00101 * 17 15 13 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 24 24 H 1.07992 * 120.41465 * 0.02562 * 5 4 2 25 25 H 1.08002 * 119.61859 * 180.30009 * 6 5 4 26 26 H 1.08005 * 119.61941 * 179.97438 * 8 7 6 27 27 H 1.08003 * 120.41682 * 180.02562 * 9 8 7 28 28 H 1.00901 * 110.99750 * 296.04851 * 12 10 2 29 29 H 1.00898 * 110.99876 * 60.00104 * 12 10 2 30 30 H 0.96997 * 120.00123 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 1.7123 -2.0393 -1.4631 6 6 2.1869 -2.6562 -2.6050 7 7 2.9439 -1.9990 -3.4618 8 6 3.2729 -0.7366 -3.2701 9 6 2.8305 -0.0524 -2.1537 10 6 2.0400 -0.7212 1.2493 11 1 1.6767 -1.7488 1.2493 12 7 3.5090 -0.7217 1.2490 13 6 1.5377 -0.0107 2.4797 14 1 0.9170 0.8675 2.3806 15 6 1.8704 -0.4821 3.7320 16 7 1.4323 0.1382 4.8058 17 14 2.9444 -2.0008 3.9035 18 1 4.3720 -1.5947 3.9495 19 1 2.5928 -2.7169 5.1560 20 1 2.7221 -2.8980 2.7412 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.0962 -2.5839 -0.7631 25 1 1.9381 -3.6897 -2.7961 26 1 3.8952 -0.2312 -3.9939 27 1 3.1030 0.9816 -2.0025 28 1 3.8702 -1.2481 0.4676 29 1 3.8709 0.2201 1.2488 30 1 1.6667 -0.1931 5.6868 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260928688.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:36 Heat of formation + Delta-G solvation = 1.039410 kcal Electronic energy + Delta-G solvation = -13338.870461 eV Core-core repulsion = 11132.537043 eV Total energy + Delta-G solvation = -2206.333418 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.22267 -38.10361 -34.60438 -33.17730 -32.10419 -31.25769 -27.95065 -25.53780 -24.39380 -23.42792 -20.91818 -19.17624 -17.44234 -17.14013 -16.59982 -16.41369 -15.97661 -15.35401 -14.97724 -14.65157 -14.39654 -14.14833 -13.74998 -13.08408 -12.87904 -12.66588 -12.59315 -12.26944 -11.92023 -11.53499 -11.09802 -10.72919 -10.45134 -10.36561 -10.03318 -9.24020 -8.21971 -6.32819 0.25588 0.35136 1.50246 1.56228 1.70109 2.53244 2.92587 3.13338 3.61950 3.72124 3.86813 4.15538 4.25912 4.27670 4.34049 4.48718 4.64478 4.80884 4.94107 4.96395 5.05100 5.10931 5.33017 5.40304 5.57965 5.70929 5.83946 6.16985 6.49251 6.82478 6.97859 7.06054 7.44187 8.90628 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.045496 B = 0.009989 C = 0.009237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.288759 B = 2802.372186 C = 3030.520108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.069 4.069 3 H 0.069 0.931 4 C -0.031 4.031 5 C -0.177 4.177 6 C 0.094 3.906 7 N -0.514 5.514 8 C 0.095 3.905 9 C -0.177 4.177 10 C 0.202 3.798 11 H 0.033 0.967 12 N -0.848 5.848 13 C -0.512 4.512 14 H 0.043 0.957 15 C 0.026 3.974 16 N -0.949 5.949 17 Si 0.994 3.006 18 H -0.282 1.282 19 H -0.328 1.328 20 H -0.263 1.263 21 H 0.054 0.946 22 H 0.057 0.943 23 H 0.049 0.951 24 H 0.132 0.868 25 H 0.175 0.825 26 H 0.180 0.820 27 H 0.146 0.854 28 H 0.324 0.676 29 H 0.339 0.661 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.449 -2.986 -14.899 15.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.090 4.090 3 H 0.087 0.913 4 C -0.039 4.039 5 C -0.197 4.197 6 C -0.062 4.062 7 N -0.223 5.223 8 C -0.061 4.061 9 C -0.196 4.196 10 C 0.092 3.908 11 H 0.051 0.949 12 N -0.378 5.378 13 C -0.550 4.550 14 H 0.061 0.939 15 C -0.173 4.173 16 N -0.589 5.589 17 Si 0.826 3.174 18 H -0.208 1.208 19 H -0.258 1.258 20 H -0.188 1.188 21 H 0.073 0.927 22 H 0.076 0.924 23 H 0.068 0.932 24 H 0.150 0.850 25 H 0.192 0.808 26 H 0.197 0.803 27 H 0.164 0.836 28 H 0.137 0.863 29 H 0.152 0.848 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.695 -3.788 -14.785 15.499 hybrid contribution -0.141 0.572 0.633 0.865 sum 2.554 -3.216 -14.152 14.736 Atomic orbital electron populations 1.21620 0.93861 1.01768 1.01011 1.20818 0.97083 0.98896 0.92174 0.91258 1.20529 0.93972 0.94268 0.95092 1.22154 1.02504 0.95464 0.99543 1.23042 0.92765 1.00746 0.89642 1.67709 1.13359 1.09994 1.31278 1.23135 0.96791 0.90142 0.96075 1.22279 0.99542 1.02250 0.95563 1.19341 0.84884 0.95230 0.91302 0.94923 1.59006 1.09725 1.20052 1.49053 1.21185 1.30633 1.12915 0.90265 0.93882 1.25790 0.96121 0.99912 0.95473 1.70084 1.47563 1.42719 0.98578 0.84934 0.78912 0.79168 0.74432 1.20838 1.25824 1.18794 0.92739 0.92419 0.93218 0.84976 0.80805 0.80329 0.83632 0.86303 0.84770 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.25 8.76 71.98 0.63 -3.62 16 2 C -0.07 -2.40 2.30 -11.54 -0.03 -2.43 16 3 H 0.07 2.44 7.95 -2.39 -0.02 2.42 16 4 C -0.03 -0.89 3.76 -19.67 -0.07 -0.97 16 5 C -0.18 -4.93 8.84 22.36 0.20 -4.73 16 6 C 0.09 2.37 11.18 84.68 0.95 3.31 16 7 N -0.51 -13.59 10.36 -195.84 -2.03 -15.62 16 8 C 0.09 2.21 11.18 84.68 0.95 3.16 16 9 C -0.18 -4.39 9.76 22.36 0.22 -4.17 16 10 C 0.20 8.60 1.58 44.17 0.07 8.67 16 11 H 0.03 1.47 6.52 -2.39 -0.02 1.45 16 12 N -0.85 -33.37 6.69 -171.80 -1.15 -34.52 16 13 C -0.51 -27.52 8.58 25.60 0.22 -27.30 16 14 H 0.04 2.54 6.96 -2.91 -0.02 2.52 16 15 C 0.03 1.47 5.47 84.65 0.46 1.94 16 16 N -0.95 -58.92 13.96 21.45 0.30 -58.62 16 17 Si 0.99 49.11 26.03 68.60 1.79 50.90 16 18 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 19 H -0.33 -16.47 7.11 99.48 0.71 -15.76 16 20 H -0.26 -12.31 6.54 99.48 0.65 -11.66 16 21 H 0.05 1.77 7.50 -2.39 -0.02 1.76 16 22 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.05 1.95 6.62 -2.38 -0.02 1.93 16 24 H 0.13 3.67 7.28 -2.91 -0.02 3.65 16 25 H 0.17 3.38 8.06 -2.91 -0.02 3.36 16 26 H 0.18 2.97 8.06 -2.91 -0.02 2.94 16 27 H 0.15 3.09 8.01 -2.91 -0.02 3.07 16 28 H 0.32 11.22 8.13 -89.69 -0.73 10.49 16 29 H 0.34 12.83 8.99 -89.70 -0.81 12.02 16 30 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -64.65 249.73 2.06 -62.59 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: -0.44 Total: 21.40 kcal Atomic # 6 Polarization: -29.73 SS G_CDS: 3.59 Total: -26.14 kcal Atomic # 7 Polarization: -105.87 SS G_CDS: -2.88 Total: -108.75 kcal Atomic # 14 Polarization: 49.11 SS G_CDS: 1.79 Total: 50.90 kcal Total: -64.65 2.06 -62.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260928688.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.630 kcal (2) G-P(sol) polarization free energy of solvation -64.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds