Wall clock time and date at job start Mon Mar 30 2020 02:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46803 * 2 1 4 4 C 1.50697 * 109.46899 * 119.99574 * 2 1 3 5 5 C 1.38652 * 120.79173 * 59.71807 * 4 2 1 6 6 C 1.38200 * 119.16112 * 179.79610 * 5 4 2 7 7 N 1.31863 * 120.76689 * 0.49131 * 6 5 4 8 8 C 1.31866 * 121.72501 * 359.74107 * 7 6 5 9 9 C 1.38197 * 120.76634 * 0.02562 * 8 7 6 10 10 C 1.52998 * 109.47067 * 239.99646 * 2 1 3 11 11 H 1.08999 * 109.46993 * 299.99429 * 10 2 1 12 12 N 1.46906 * 109.46958 * 180.02562 * 10 2 1 13 13 C 1.50697 * 109.47319 * 60.00186 * 10 2 1 14 14 H 1.08002 * 119.99885 * 359.97438 * 13 10 2 15 15 C 1.37878 * 120.00198 * 179.97438 * 13 10 2 16 16 N 1.31517 * 119.99780 * 359.97438 * 15 13 10 17 17 Si 1.86790 * 120.00186 * 180.02562 * 15 13 10 18 18 H 1.48500 * 109.47619 * 59.99850 * 17 15 13 19 19 H 1.48497 * 109.47473 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47193 * 299.99661 * 17 15 13 21 21 H 1.09000 * 109.47037 * 60.00512 * 1 2 3 22 22 H 1.08997 * 109.46803 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47282 * 300.00210 * 1 2 3 24 24 H 1.08003 * 120.41437 * 0.02562 * 5 4 2 25 25 H 1.08007 * 119.61462 * 180.21165 * 6 5 4 26 26 H 1.08006 * 119.61912 * 179.97438 * 8 7 6 27 27 H 1.08006 * 120.42525 * 179.97438 * 9 8 7 28 28 H 1.00896 * 111.00309 * 176.04353 * 12 10 2 29 29 H 1.00902 * 110.99923 * 300.00516 * 12 10 2 30 30 H 0.97003 * 119.99844 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.7026 -2.0357 1.4692 6 6 2.1853 -2.6554 2.6063 7 7 2.9422 -1.9982 3.4630 8 6 3.2719 -0.7360 3.2708 9 6 2.8303 -0.0523 2.1539 10 6 2.0400 -0.7213 -1.2492 11 1 1.6768 -1.7490 -1.2490 12 7 3.5091 -0.7218 -1.2488 13 6 1.5378 -0.0110 -2.4797 14 1 0.9165 0.8669 -2.3807 15 6 1.8713 -0.4818 -3.7319 16 7 2.6282 -1.5506 -3.8525 17 14 1.2493 0.3990 -5.2572 18 1 1.7443 1.7991 -5.2568 19 1 1.7442 -0.3011 -6.4696 20 1 -0.2357 0.3991 -5.2578 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.0796 -2.5781 0.7734 25 1 1.9358 -3.6887 2.7978 26 1 3.8935 -0.2304 3.9949 27 1 3.1033 0.9817 2.0022 28 1 3.8707 -1.2480 -2.0301 29 1 3.8710 0.2200 -1.2486 30 1 2.8632 -1.8816 -4.7335 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260928690.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:38 Heat of formation + Delta-G solvation = -1.762050 kcal Electronic energy + Delta-G solvation = -13256.546891 eV Core-core repulsion = 11050.091992 eV Total energy + Delta-G solvation = -2206.454898 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.00520 -37.84923 -34.77871 -32.57262 -31.96391 -31.02769 -27.60797 -25.52204 -24.29759 -23.51671 -20.89358 -18.72870 -17.36094 -16.99332 -16.62512 -16.27563 -15.76712 -14.93854 -14.85930 -14.64941 -14.24622 -14.10089 -13.26299 -13.03293 -12.74231 -12.64124 -12.55426 -12.22752 -12.04629 -11.63145 -11.29377 -10.62572 -10.26362 -10.11943 -9.89458 -9.12157 -8.07978 -6.31646 0.39764 0.56051 1.39013 1.40445 1.47321 2.38356 3.07406 3.10543 3.72098 3.91124 3.97969 4.32597 4.41237 4.44273 4.52976 4.66158 4.86209 4.95387 5.03810 5.12745 5.22619 5.30602 5.43586 5.53897 5.71925 5.87129 5.97415 6.15873 6.72363 7.00308 7.16460 7.17121 7.44112 8.86654 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.056970 B = 0.008470 C = 0.008184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.368624 B = 3304.820128 C = 3420.575173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.041 4.041 3 H 0.067 0.933 4 C -0.003 4.003 5 C -0.178 4.178 6 C 0.088 3.912 7 N -0.519 5.519 8 C 0.090 3.910 9 C -0.177 4.177 10 C 0.227 3.773 11 H 0.004 0.996 12 N -0.844 5.844 13 C -0.560 4.560 14 H 0.057 0.943 15 C 0.018 3.982 16 N -0.919 5.919 17 Si 0.953 3.047 18 H -0.273 1.273 19 H -0.288 1.288 20 H -0.274 1.274 21 H 0.057 0.943 22 H 0.046 0.954 23 H 0.061 0.939 24 H 0.122 0.878 25 H 0.171 0.829 26 H 0.179 0.821 27 H 0.144 0.856 28 H 0.340 0.660 29 H 0.314 0.686 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.610 2.764 8.726 9.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.060 4.060 3 H 0.085 0.915 4 C -0.011 4.011 5 C -0.197 4.197 6 C -0.068 4.068 7 N -0.229 5.229 8 C -0.066 4.066 9 C -0.197 4.197 10 C 0.117 3.883 11 H 0.022 0.978 12 N -0.371 5.371 13 C -0.599 4.599 14 H 0.075 0.925 15 C -0.182 4.182 16 N -0.559 5.559 17 Si 0.779 3.221 18 H -0.198 1.198 19 H -0.214 1.214 20 H -0.199 1.199 21 H 0.076 0.924 22 H 0.066 0.934 23 H 0.079 0.921 24 H 0.140 0.860 25 H 0.188 0.812 26 H 0.196 0.804 27 H 0.162 0.838 28 H 0.154 0.846 29 H 0.123 0.877 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.297 1.813 10.054 10.298 hybrid contribution -0.631 1.077 -2.994 3.244 sum -1.928 2.891 7.060 7.869 Atomic orbital electron populations 1.21648 0.93785 1.01505 1.01372 1.20200 0.96062 0.98244 0.91542 0.91483 1.20409 0.92681 0.93989 0.94015 1.22017 1.02836 0.95730 0.99161 1.22928 0.93273 1.00486 0.90099 1.67653 1.13693 1.10014 1.31512 1.23075 0.97000 0.90236 0.96338 1.22193 0.99625 1.02228 0.95612 1.18792 0.86094 0.93528 0.89886 0.97841 1.59464 1.09467 1.17533 1.50677 1.22257 1.32075 1.12968 0.92630 0.92465 1.25734 0.95216 0.95346 1.01856 1.69857 1.37765 1.23875 1.24431 0.85693 0.78743 0.78700 0.78936 1.19801 1.21385 1.19881 0.92433 0.93447 0.92052 0.85968 0.81229 0.80435 0.83838 0.84622 0.87720 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.41 8.76 71.98 0.63 -3.78 16 2 C -0.04 -1.60 2.30 -11.54 -0.03 -1.63 16 3 H 0.07 2.55 7.95 -2.39 -0.02 2.53 16 4 C 0.00 -0.10 4.39 -19.67 -0.09 -0.19 16 5 C -0.18 -6.20 8.84 22.36 0.20 -6.01 16 6 C 0.09 2.78 11.18 84.68 0.95 3.73 16 7 N -0.52 -16.75 10.36 -195.85 -2.03 -18.77 16 8 C 0.09 2.61 11.18 84.68 0.95 3.55 16 9 C -0.18 -5.48 9.76 22.36 0.22 -5.26 16 10 C 0.23 10.80 2.13 44.17 0.09 10.89 16 11 H 0.00 0.19 7.50 -2.39 -0.02 0.18 16 12 N -0.84 -39.64 8.77 -171.80 -1.51 -41.15 16 13 C -0.56 -28.74 8.00 25.60 0.20 -28.53 16 14 H 0.06 2.87 6.71 -2.91 -0.02 2.85 16 15 C 0.02 0.95 5.38 84.65 0.46 1.41 16 16 N -0.92 -50.69 11.54 21.45 0.25 -50.44 16 17 Si 0.95 42.01 29.54 68.60 2.03 44.03 16 18 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 21 H 0.06 2.13 6.62 -2.39 -0.02 2.12 16 22 H 0.05 1.66 7.47 -2.39 -0.02 1.65 16 23 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.12 4.33 7.28 -2.91 -0.02 4.30 16 25 H 0.17 4.33 8.06 -2.91 -0.02 4.31 16 26 H 0.18 3.83 8.06 -2.91 -0.02 3.80 16 27 H 0.14 3.81 8.01 -2.91 -0.02 3.79 16 28 H 0.34 17.59 7.08 -89.70 -0.63 16.96 16 29 H 0.31 14.04 8.99 -89.69 -0.81 13.23 16 30 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -57.50 253.60 2.03 -55.47 By element: Atomic # 1 Polarization: 36.96 SS G_CDS: -0.29 Total: 36.67 kcal Atomic # 6 Polarization: -29.39 SS G_CDS: 3.58 Total: -25.81 kcal Atomic # 7 Polarization: -107.07 SS G_CDS: -3.29 Total: -110.36 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.03 kcal Total: -57.50 2.03 -55.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260928690.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.709 kcal (2) G-P(sol) polarization free energy of solvation -57.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds