Wall clock time and date at job start Mon Mar 30 2020 02:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47258 * 2 1 4 4 C 1.50706 * 109.46910 * 119.99208 * 2 1 3 5 5 C 1.38657 * 120.78743 * 59.72201 * 4 2 1 6 6 C 1.38203 * 119.16168 * 179.75552 * 5 4 2 7 7 N 1.31871 * 120.76304 * 0.52753 * 6 5 4 8 8 C 1.31868 * 121.72584 * 359.74683 * 7 6 5 9 9 C 1.38203 * 120.76428 * 359.97288 * 8 7 6 10 10 C 1.52997 * 109.47505 * 239.99490 * 2 1 3 11 11 H 1.09001 * 109.46922 * 185.00308 * 10 2 1 12 12 N 1.46906 * 109.46907 * 305.00237 * 10 2 1 13 13 C 1.50698 * 109.47342 * 65.00295 * 10 2 1 14 14 H 1.08004 * 119.99528 * 359.97438 * 13 10 2 15 15 C 1.37876 * 120.00356 * 180.02562 * 13 10 2 16 16 N 1.31518 * 119.99554 * 359.97438 * 15 13 10 17 17 Si 1.86790 * 120.00086 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.47337 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47146 * 119.99673 * 17 15 13 20 20 H 1.48499 * 109.47460 * 239.99758 * 17 15 13 21 21 H 1.09000 * 109.47258 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47470 * 300.00855 * 1 2 3 23 23 H 1.09001 * 109.46841 * 60.00541 * 1 2 3 24 24 H 1.07997 * 120.41633 * 0.02562 * 5 4 2 25 25 H 1.08003 * 119.61701 * 180.24864 * 6 5 4 26 26 H 1.08007 * 119.61723 * 179.97438 * 8 7 6 27 27 H 1.08002 * 120.41436 * 180.02562 * 9 8 7 28 28 H 1.00896 * 111.00309 * 59.99727 * 12 10 2 29 29 H 1.00902 * 110.99923 * 183.95891 * 12 10 2 30 30 H 0.97005 * 119.99198 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 6 1.7025 -2.0358 1.4693 6 6 2.1858 -2.6557 2.6060 7 7 2.9428 -1.9985 3.4627 8 6 3.2718 -0.7360 3.2709 9 6 2.8302 -0.0523 2.1539 10 6 2.0400 -0.7213 -1.2491 11 1 3.1263 -0.7995 -1.2053 12 7 1.4542 -2.0671 -1.3109 13 6 1.6415 0.0568 -2.4766 14 1 1.0801 0.9740 -2.3758 15 6 1.9926 -0.4025 -3.7282 16 7 2.6757 -1.5196 -3.8509 17 14 1.4979 0.5617 -5.2496 18 1 0.7406 1.7728 -4.8437 19 1 2.7158 0.9663 -5.9969 20 1 0.6437 -0.2877 -6.1180 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.0796 -2.5781 0.7735 25 1 1.9369 -3.6892 2.7971 26 1 3.8935 -0.2304 3.9950 27 1 3.1034 0.9815 2.0022 28 1 0.4471 -2.0216 -1.3521 29 1 1.8250 -2.5874 -2.0919 30 1 2.9231 -1.8426 -4.7316 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260928691.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:40 Heat of formation + Delta-G solvation = 20.738557 kcal Electronic energy + Delta-G solvation = -13306.019273 eV Core-core repulsion = 11100.540074 eV Total energy + Delta-G solvation = -2205.479199 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.65323 -36.33883 -32.93034 -30.96680 -30.44401 -29.02738 -26.04444 -24.31261 -22.77375 -21.93977 -19.02824 -16.64493 -15.78977 -15.72626 -15.10535 -14.68921 -14.27437 -13.44326 -13.21946 -12.92483 -12.53895 -12.50502 -11.91143 -11.27032 -11.09023 -11.05096 -10.74554 -10.50717 -10.08203 -9.86480 -9.68283 -8.93921 -8.74023 -8.59428 -8.50739 -7.18077 -6.10262 -4.26302 1.72487 1.92892 3.18496 3.27933 3.30994 4.29205 4.42201 4.94407 5.12532 5.29096 5.43937 5.69579 5.86183 5.93077 6.09993 6.12355 6.29070 6.36904 6.49141 6.64525 6.74518 6.92029 7.05450 7.23021 7.35563 7.64424 7.72466 8.10372 8.48897 8.67159 8.91632 9.09007 9.45419 10.87561 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.057116 B = 0.008466 C = 0.008204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.113473 B = 3306.360333 C = 3411.982163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.047 4.047 3 H 0.067 0.933 4 C -0.012 4.012 5 C -0.137 4.137 6 C 0.076 3.924 7 N -0.504 5.504 8 C 0.080 3.920 9 C -0.182 4.182 10 C 0.222 3.778 11 H 0.035 0.965 12 N -0.850 5.850 13 C -0.547 4.547 14 H 0.057 0.943 15 C 0.065 3.935 16 N -0.893 5.893 17 Si 0.893 3.107 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.284 1.284 21 H 0.057 0.943 22 H 0.033 0.967 23 H 0.064 0.936 24 H 0.155 0.845 25 H 0.145 0.855 26 H 0.144 0.856 27 H 0.124 0.876 28 H 0.311 0.689 29 H 0.353 0.647 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.625 0.995 7.582 8.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.066 4.066 3 H 0.085 0.915 4 C -0.020 4.020 5 C -0.156 4.156 6 C -0.079 4.079 7 N -0.213 5.213 8 C -0.077 4.077 9 C -0.202 4.202 10 C 0.112 3.888 11 H 0.053 0.947 12 N -0.380 5.380 13 C -0.587 4.587 14 H 0.075 0.925 15 C -0.138 4.138 16 N -0.532 5.532 17 Si 0.721 3.279 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 H 0.075 0.925 22 H 0.052 0.948 23 H 0.083 0.917 24 H 0.172 0.828 25 H 0.163 0.837 26 H 0.161 0.839 27 H 0.142 0.858 28 H 0.121 0.879 29 H 0.170 0.830 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.879 0.325 8.904 9.106 hybrid contribution -0.715 1.336 -2.725 3.118 sum -2.594 1.661 6.179 6.904 Atomic orbital electron populations 1.21698 0.95051 1.01612 1.00478 1.20375 0.95632 0.98211 0.92428 0.91507 1.20585 0.92772 0.94262 0.94407 1.22463 1.00830 0.95194 0.97137 1.22693 0.94551 0.99558 0.91146 1.67536 1.13261 1.09183 1.31369 1.22483 0.98205 0.90757 0.96257 1.22065 1.00790 1.01227 0.96155 1.18828 0.94994 0.86307 0.88700 0.94659 1.59562 1.09028 1.18295 1.51151 1.21959 1.35743 1.09282 0.91686 0.92509 1.25024 0.94425 0.95130 0.99184 1.69759 1.38515 1.21097 1.23848 0.86522 0.78310 0.80104 0.82930 1.19819 1.20974 1.21040 0.92451 0.94805 0.91698 0.82753 0.83719 0.83908 0.85777 0.87934 0.83050 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.36 37.15 0.31 -2.01 16 2 C -0.05 -0.93 2.43 -91.77 -0.22 -1.16 16 3 H 0.07 1.32 7.95 -51.93 -0.41 0.90 16 4 C -0.01 -0.23 4.80 -104.32 -0.50 -0.73 16 5 C -0.14 -2.43 8.50 -39.44 -0.34 -2.77 16 6 C 0.08 1.28 11.18 -17.55 -0.20 1.09 16 7 N -0.50 -8.80 10.36 -13.25 -0.14 -8.93 16 8 C 0.08 1.29 11.18 -17.55 -0.20 1.09 16 9 C -0.18 -3.06 9.76 -39.44 -0.39 -3.45 16 10 C 0.22 5.21 2.45 -68.86 -0.17 5.04 16 11 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 12 N -0.85 -18.67 6.38 -5.65 -0.04 -18.70 16 13 C -0.55 -14.01 8.02 -34.44 -0.28 -14.28 16 14 H 0.06 1.45 7.06 -52.48 -0.37 1.08 16 15 C 0.06 1.70 5.38 -17.82 -0.10 1.60 16 16 N -0.89 -24.22 11.54 55.43 0.64 -23.58 16 17 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H 0.06 0.98 5.93 -51.93 -0.31 0.67 16 22 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 1.21 6.95 -51.93 -0.36 0.85 16 24 H 0.16 2.74 5.83 -52.49 -0.31 2.44 16 25 H 0.15 2.02 8.06 -52.48 -0.42 1.60 16 26 H 0.14 1.84 8.06 -52.48 -0.42 1.42 16 27 H 0.12 1.83 8.01 -52.49 -0.42 1.41 16 28 H 0.31 6.46 7.03 -39.29 -0.28 6.19 16 29 H 0.35 8.62 7.08 -39.29 -0.28 8.34 16 30 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 247.75 15.07 3.73 3.73 Total: -1.00 -27.16 247.75 -6.45 -33.61 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -3.56 Total: 13.98 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -2.07 Total: -15.57 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: 0.47 Total: -51.22 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -27.16 -6.45 -33.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260928691.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.346 kcal (2) G-P(sol) polarization free energy of solvation -27.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds