Wall clock time and date at job start Mon Mar 30 2020 02:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47589 * 2 1 4 4 C 1.50702 * 109.46936 * 120.00466 * 2 1 3 5 5 C 1.38225 * 119.61833 * 34.99546 * 4 2 1 6 6 C 1.38635 * 119.15939 * 180.02562 * 5 4 2 7 7 C 1.38675 * 118.41956 * 0.02562 * 6 5 4 8 8 C 1.38186 * 119.16332 * 0.27967 * 7 6 5 9 9 N 1.31860 * 119.61626 * 215.02223 * 4 2 1 10 10 C 1.53001 * 109.46979 * 240.00012 * 2 1 3 11 11 H 1.09005 * 109.47142 * 185.00287 * 10 2 1 12 12 N 1.46894 * 109.47214 * 305.00051 * 10 2 1 13 13 C 1.50703 * 109.47191 * 65.00495 * 10 2 1 14 14 H 1.07999 * 119.99548 * 359.97438 * 13 10 2 15 15 C 1.37869 * 119.99895 * 179.97438 * 13 10 2 16 16 N 1.31515 * 120.00426 * 359.97438 * 15 13 10 17 17 Si 1.86801 * 119.99852 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47331 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47541 * 119.99876 * 17 15 13 20 20 H 1.48506 * 109.47192 * 240.00240 * 17 15 13 21 21 H 1.09001 * 109.47589 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47210 * 299.99985 * 1 2 3 23 23 H 1.09005 * 109.46785 * 59.99584 * 1 2 3 24 24 H 1.07997 * 120.42090 * 0.02562 * 5 4 2 25 25 H 1.07998 * 120.78847 * 180.02562 * 6 5 4 26 26 H 1.08002 * 120.41399 * 179.97438 * 7 6 5 27 27 H 1.07999 * 119.61418 * 179.70216 * 8 7 6 28 28 H 1.00904 * 111.00187 * 60.00471 * 12 10 2 29 29 H 1.00904 * 111.00340 * 183.95331 * 12 10 2 30 30 H 0.96996 * 120.00133 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.3319 -1.7935 1.7277 6 6 1.8022 -2.4397 2.8604 7 6 2.9644 -1.9700 3.4536 8 6 3.6073 -0.8776 2.9033 9 7 3.1346 -0.2916 1.8205 10 6 2.0400 -0.7213 -1.2493 11 1 3.1263 -0.7995 -1.2056 12 7 1.4542 -2.0669 -1.3112 13 6 1.6414 0.0571 -2.4766 14 1 1.0801 0.9742 -2.3757 15 6 1.9933 -0.4016 -3.7282 16 7 2.6772 -1.5182 -3.8511 17 14 1.4986 0.5628 -5.2496 18 1 0.7403 1.7733 -4.8435 19 1 2.7164 0.9685 -5.9963 20 1 0.6451 -0.2868 -6.1186 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.4297 -2.1319 1.2400 25 1 1.2760 -3.2887 3.2711 26 1 3.3593 -2.4490 4.3374 27 1 4.5102 -0.5028 3.3621 28 1 0.4470 -2.0214 -1.3524 29 1 1.8249 -2.5872 -2.0923 30 1 2.9251 -1.8407 -4.7317 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260944545.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:33 Heat of formation + Delta-G solvation = 2.771353 kcal Electronic energy + Delta-G solvation = -13311.308123 eV Core-core repulsion = 11105.049808 eV Total energy + Delta-G solvation = -2206.258315 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.05253 -37.77701 -34.48731 -33.21040 -32.08884 -30.14230 -27.94910 -25.97388 -24.04368 -23.53383 -20.63815 -18.54849 -17.46102 -17.21134 -16.81936 -16.23975 -15.87235 -14.94800 -14.78937 -14.42895 -14.10508 -13.76384 -13.41475 -12.95315 -12.86244 -12.76491 -12.41971 -12.17777 -11.71985 -11.65792 -11.37034 -10.64509 -10.60037 -10.13885 -9.59523 -9.09833 -8.07835 -6.32495 0.43055 0.59062 1.36895 1.40150 1.50930 2.38518 3.07608 3.10569 3.57424 4.05065 4.15700 4.38705 4.44541 4.49388 4.56106 4.60642 4.72882 4.96422 5.12813 5.19795 5.31045 5.35618 5.51174 5.51434 5.71134 5.79910 6.01815 6.14195 6.72304 6.99106 7.20088 7.32404 7.44176 8.87181 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.056750 B = 0.008478 C = 0.008379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.270443 B = 3301.734013 C = 3340.783425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.031 4.031 3 H 0.051 0.949 4 C 0.136 3.864 5 C -0.152 4.152 6 C -0.084 4.084 7 C -0.183 4.183 8 C 0.073 3.927 9 N -0.532 5.532 10 C 0.233 3.767 11 H -0.017 1.017 12 N -0.836 5.836 13 C -0.558 4.558 14 H 0.055 0.945 15 C 0.017 3.983 16 N -0.920 5.920 17 Si 0.958 3.042 18 H -0.268 1.268 19 H -0.286 1.286 20 H -0.278 1.278 21 H 0.069 0.931 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.141 0.859 25 H 0.162 0.838 26 H 0.166 0.834 27 H 0.171 0.829 28 H 0.320 0.680 29 H 0.339 0.661 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.769 -1.794 11.422 12.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.051 4.051 3 H 0.070 0.930 4 C -0.001 4.001 5 C -0.172 4.172 6 C -0.109 4.109 7 C -0.202 4.202 8 C -0.083 4.083 9 N -0.242 5.242 10 C 0.122 3.878 11 H 0.001 0.999 12 N -0.365 5.365 13 C -0.598 4.598 14 H 0.074 0.926 15 C -0.183 4.183 16 N -0.560 5.560 17 Si 0.784 3.216 18 H -0.193 1.193 19 H -0.212 1.212 20 H -0.203 1.203 21 H 0.088 0.912 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.159 0.841 25 H 0.180 0.820 26 H 0.183 0.817 27 H 0.188 0.812 28 H 0.131 0.869 29 H 0.153 0.847 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.893 -1.304 11.678 12.101 hybrid contribution -0.504 0.147 -1.812 1.886 sum -3.397 -1.157 9.866 10.498 Atomic orbital electron populations 1.21685 0.92934 1.02384 1.01189 1.20068 0.96877 0.97209 0.90924 0.93047 1.21339 0.90283 0.93983 0.94465 1.22048 1.02223 0.95996 0.96927 1.21979 0.95775 0.99050 0.94125 1.22392 0.96893 0.98180 1.02750 1.23166 0.99831 0.93720 0.91614 1.67431 1.13265 1.33016 1.10441 1.18567 0.92180 0.87089 0.89982 0.99855 1.59467 1.09387 1.17166 1.50458 1.22255 1.35513 1.09315 0.92692 0.92648 1.25774 0.94490 0.96045 1.01956 1.69881 1.39371 1.22394 1.24354 0.85511 0.77801 0.78917 0.79357 1.19278 1.21167 1.20326 0.91213 0.92468 0.92599 0.84136 0.81998 0.81680 0.81199 0.86946 0.84703 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.50 7.97 71.98 0.57 -3.93 16 2 C -0.03 -1.35 2.50 -11.54 -0.03 -1.38 16 3 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 4 C 0.14 5.50 5.68 42.55 0.24 5.74 16 5 C -0.15 -5.12 8.50 22.36 0.19 -4.93 16 6 C -0.08 -2.23 10.18 22.47 0.23 -2.00 16 7 C -0.18 -4.62 10.11 22.36 0.23 -4.39 16 8 C 0.07 2.28 11.18 84.67 0.95 3.23 16 9 N -0.53 -21.54 10.27 -183.88 -1.89 -23.43 16 10 C 0.23 12.01 2.47 44.17 0.11 12.12 16 11 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 12 N -0.84 -39.47 8.20 -171.80 -1.41 -40.88 16 13 C -0.56 -30.41 8.02 25.60 0.21 -30.21 16 14 H 0.06 2.98 7.06 -2.91 -0.02 2.96 16 15 C 0.02 0.92 5.38 84.65 0.46 1.37 16 16 N -0.92 -52.38 11.54 21.44 0.25 -52.13 16 17 Si 0.96 43.43 29.54 68.60 2.03 45.45 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 20 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 21 H 0.07 2.33 4.96 -2.39 -0.01 2.32 16 22 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 23 H 0.05 2.12 6.95 -2.38 -0.02 2.10 16 24 H 0.14 4.43 6.31 -2.91 -0.02 4.41 16 25 H 0.16 3.05 8.06 -2.91 -0.02 3.02 16 26 H 0.17 2.75 8.06 -2.91 -0.02 2.72 16 27 H 0.17 4.13 8.06 -2.91 -0.02 4.11 16 28 H 0.32 13.87 7.03 -89.69 -0.63 13.24 16 29 H 0.34 17.72 7.08 -89.69 -0.64 17.08 16 30 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -63.62 249.16 2.01 -61.61 By element: Atomic # 1 Polarization: 33.87 SS G_CDS: -0.11 Total: 33.76 kcal Atomic # 6 Polarization: -27.53 SS G_CDS: 3.15 Total: -24.38 kcal Atomic # 7 Polarization: -113.39 SS G_CDS: -3.05 Total: -116.44 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -63.62 2.01 -61.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260944545.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.379 kcal (2) G-P(sol) polarization free energy of solvation -63.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds