Wall clock time and date at job start Mon Mar 30 2020 02:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.47127 * 2 1 4 4 C 1.50707 * 109.46615 * 119.99473 * 2 1 3 5 5 C 1.38227 * 119.62024 * 34.97957 * 4 2 1 6 6 C 1.38627 * 119.15702 * 179.78495 * 5 4 2 7 7 C 1.38669 * 118.42389 * 0.47826 * 6 5 4 8 8 C 1.38186 * 119.16143 * 359.49762 * 7 6 5 9 9 N 1.31856 * 119.61172 * 214.99709 * 4 2 1 10 10 C 1.52998 * 109.47135 * 239.99406 * 2 1 3 11 11 H 1.09001 * 109.46786 * 300.00282 * 10 2 1 12 12 N 1.46895 * 109.47016 * 180.02562 * 10 2 1 13 13 C 1.50697 * 109.46970 * 60.00067 * 10 2 1 14 14 H 1.08002 * 120.00150 * 359.97438 * 13 10 2 15 15 C 1.37882 * 119.99848 * 180.02562 * 13 10 2 16 16 N 1.31512 * 120.00127 * 359.97438 * 15 13 10 17 17 Si 1.86803 * 119.99730 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47072 * 90.00236 * 17 15 13 19 19 H 1.48498 * 109.47068 * 209.99763 * 17 15 13 20 20 H 1.48499 * 109.47077 * 329.99783 * 17 15 13 21 21 H 1.08996 * 109.46874 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.46937 * 300.00727 * 1 2 3 23 23 H 1.08999 * 109.46603 * 60.00233 * 1 2 3 24 24 H 1.07997 * 120.41915 * 0.04021 * 5 4 2 25 25 H 1.08008 * 120.78688 * 180.22921 * 6 5 4 26 26 H 1.08002 * 120.42244 * 179.78279 * 7 6 5 27 27 H 1.07996 * 119.61757 * 180.25243 * 8 7 6 28 28 H 1.00898 * 110.99794 * 176.04353 * 12 10 2 29 29 H 1.00903 * 111.00162 * 300.00000 * 12 10 2 30 30 H 0.97001 * 119.99993 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 1.3317 -1.7930 1.7283 6 6 1.8047 -2.4421 2.8581 7 6 2.9645 -1.9697 3.4538 8 6 3.6114 -0.8818 2.8991 9 7 3.1348 -0.2916 1.8203 10 6 2.0401 -0.7214 -1.2491 11 1 1.6767 -1.7490 -1.2490 12 7 3.5090 -0.7219 -1.2488 13 6 1.5377 -0.0111 -2.4796 14 1 0.9165 0.8668 -2.3806 15 6 1.8704 -0.4826 -3.7319 16 7 2.6265 -1.5519 -3.8525 17 14 1.2483 0.3984 -5.2572 18 1 2.2273 1.4392 -5.6615 19 1 1.0825 -0.5808 -6.3613 20 1 -0.0594 1.0369 -4.9613 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 0.4295 -2.1315 1.2406 25 1 1.2802 -3.2930 3.2672 26 1 3.3598 -2.4488 4.3373 27 1 4.5174 -0.5104 3.3546 28 1 3.8706 -1.2481 -2.0301 29 1 3.8710 0.2200 -1.2487 30 1 2.8602 -1.8838 -4.7335 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260944548.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:38 Heat of formation + Delta-G solvation = 20.944227 kcal Electronic energy + Delta-G solvation = -13275.080638 eV Core-core repulsion = 11069.610358 eV Total energy + Delta-G solvation = -2205.470280 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.67409 -35.83666 -32.66691 -31.89040 -30.46366 -28.98290 -25.55887 -24.07275 -22.80452 -21.85602 -19.28580 -16.77856 -16.13230 -15.59279 -14.96082 -14.60133 -13.82835 -13.51544 -13.23276 -12.95835 -12.57949 -12.40938 -11.67599 -11.23040 -11.09800 -10.84384 -10.70907 -10.42786 -10.28139 -9.76560 -9.54210 -9.25514 -8.72614 -8.55491 -8.24477 -7.02690 -6.00703 -4.17497 1.71035 1.84881 3.25044 3.32585 3.35257 4.33865 4.45112 4.92347 5.20390 5.22431 5.33244 5.54173 5.70291 5.93479 6.02120 6.15375 6.21288 6.46980 6.55908 6.65390 6.80479 6.85733 7.00929 7.10276 7.30223 7.72756 7.81229 8.21212 8.69990 8.79146 9.08576 9.28087 9.54995 10.95982 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.056487 B = 0.008630 C = 0.008225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.567623 B = 3243.771005 C = 3403.424807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.038 4.038 3 H 0.074 0.926 4 C 0.181 3.819 5 C -0.178 4.178 6 C -0.080 4.080 7 C -0.201 4.201 8 C 0.097 3.903 9 N -0.469 5.469 10 C 0.227 3.773 11 H 0.034 0.966 12 N -0.848 5.848 13 C -0.546 4.546 14 H 0.057 0.943 15 C 0.064 3.936 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 H 0.051 0.949 22 H 0.036 0.964 23 H 0.071 0.929 24 H 0.131 0.869 25 H 0.123 0.877 26 H 0.122 0.878 27 H 0.145 0.855 28 H 0.350 0.650 29 H 0.313 0.687 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.777 -0.300 10.137 10.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.058 4.058 3 H 0.092 0.908 4 C 0.044 3.956 5 C -0.198 4.198 6 C -0.106 4.106 7 C -0.221 4.221 8 C -0.061 4.061 9 N -0.178 5.178 10 C 0.116 3.884 11 H 0.052 0.948 12 N -0.376 5.376 13 C -0.586 4.586 14 H 0.075 0.925 15 C -0.138 4.138 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 H 0.070 0.930 22 H 0.055 0.945 23 H 0.090 0.910 24 H 0.148 0.852 25 H 0.141 0.859 26 H 0.140 0.860 27 H 0.162 0.838 28 H 0.165 0.835 29 H 0.121 0.879 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.313 -0.108 10.365 10.448 hybrid contribution -0.782 0.015 -1.509 1.700 sum -2.096 -0.093 8.856 9.101 Atomic orbital electron populations 1.21781 0.95043 1.01381 1.00958 1.20294 0.94518 0.99455 0.91505 0.90785 1.21468 0.88688 0.91733 0.93761 1.22018 1.02328 0.97941 0.97546 1.21437 0.95617 0.98404 0.95188 1.21922 0.97988 0.99881 1.02344 1.22653 0.98552 0.92702 0.92163 1.67538 1.11635 1.30975 1.07635 1.18844 0.86529 0.94886 0.88149 0.94797 1.59398 1.09135 1.17870 1.51235 1.21977 1.32166 1.12836 0.91571 0.92460 1.25021 0.94977 0.94674 0.99105 1.69761 1.37011 1.22739 1.23830 0.86581 0.79282 0.79368 0.82642 1.20740 1.21266 1.19909 0.93033 0.94492 0.91035 0.85155 0.85869 0.85971 0.83810 0.83509 0.87853 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 8.37 37.16 0.31 -2.17 16 2 C -0.04 -0.81 2.41 -91.77 -0.22 -1.03 16 3 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 4 C 0.18 3.62 5.39 -82.58 -0.44 3.18 16 5 C -0.18 -3.15 9.18 -39.44 -0.36 -3.51 16 6 C -0.08 -1.21 10.18 -39.28 -0.40 -1.61 16 7 C -0.20 -2.91 10.11 -39.44 -0.40 -3.31 16 8 C 0.10 1.58 11.18 -17.55 -0.20 1.38 16 9 N -0.47 -9.29 10.27 -9.47 -0.10 -9.39 16 10 C 0.23 5.64 2.29 -68.87 -0.16 5.48 16 11 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 12 N -0.85 -21.11 8.77 -5.66 -0.05 -21.16 16 13 C -0.55 -14.47 8.00 -34.44 -0.28 -14.75 16 14 H 0.06 1.50 6.71 -52.49 -0.35 1.14 16 15 C 0.06 1.74 5.38 -17.82 -0.10 1.64 16 16 N -0.89 -25.03 11.54 55.43 0.64 -24.40 16 17 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 H 0.05 0.91 6.49 -51.93 -0.34 0.57 16 22 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.07 1.38 6.62 -51.93 -0.34 1.04 16 24 H 0.13 2.14 6.31 -52.49 -0.33 1.81 16 25 H 0.12 1.46 8.06 -52.48 -0.42 1.03 16 26 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 27 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 28 H 0.35 9.34 7.08 -39.29 -0.28 9.07 16 29 H 0.31 7.66 8.99 -39.29 -0.35 7.31 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 253.02 15.07 3.81 3.81 Total: -1.00 -28.70 253.02 -6.62 -35.33 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -3.67 Total: 14.53 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -2.24 Total: -14.68 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: 0.49 Total: -54.94 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -28.70 -6.62 -35.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260944548.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.270 kcal (2) G-P(sol) polarization free energy of solvation -28.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds