Wall clock time and date at job start Mon Mar 30 2020 02:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.47127 * 2 1 4 4 C 1.50707 * 109.46615 * 119.99473 * 2 1 3 5 5 C 1.38227 * 119.62024 * 34.97957 * 4 2 1 6 6 C 1.38627 * 119.15702 * 179.78495 * 5 4 2 7 7 C 1.38669 * 118.42389 * 0.47826 * 6 5 4 8 8 C 1.38186 * 119.16143 * 359.49762 * 7 6 5 9 9 N 1.31856 * 119.61172 * 214.99709 * 4 2 1 10 10 C 1.52998 * 109.47135 * 239.99406 * 2 1 3 11 11 H 1.09001 * 109.46786 * 300.00282 * 10 2 1 12 12 N 1.46895 * 109.47016 * 180.02562 * 10 2 1 13 13 C 1.50697 * 109.46970 * 60.00067 * 10 2 1 14 14 H 1.08002 * 120.00150 * 359.97438 * 13 10 2 15 15 C 1.37882 * 119.99848 * 180.02562 * 13 10 2 16 16 N 1.31512 * 120.00127 * 359.97438 * 15 13 10 17 17 Si 1.86803 * 119.99730 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47072 * 90.00236 * 17 15 13 19 19 H 1.48498 * 109.47068 * 209.99763 * 17 15 13 20 20 H 1.48499 * 109.47077 * 329.99783 * 17 15 13 21 21 H 1.08996 * 109.46874 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.46937 * 300.00727 * 1 2 3 23 23 H 1.08999 * 109.46603 * 60.00233 * 1 2 3 24 24 H 1.07997 * 120.41915 * 0.04021 * 5 4 2 25 25 H 1.08008 * 120.78688 * 180.22921 * 6 5 4 26 26 H 1.08002 * 120.42244 * 179.78279 * 7 6 5 27 27 H 1.07996 * 119.61757 * 180.25243 * 8 7 6 28 28 H 1.00898 * 110.99794 * 176.04353 * 12 10 2 29 29 H 1.00903 * 111.00162 * 300.00000 * 12 10 2 30 30 H 0.97001 * 119.99993 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 1.3317 -1.7930 1.7283 6 6 1.8047 -2.4421 2.8581 7 6 2.9645 -1.9697 3.4538 8 6 3.6114 -0.8818 2.8991 9 7 3.1348 -0.2916 1.8203 10 6 2.0401 -0.7214 -1.2491 11 1 1.6767 -1.7490 -1.2490 12 7 3.5090 -0.7219 -1.2488 13 6 1.5377 -0.0111 -2.4796 14 1 0.9165 0.8668 -2.3806 15 6 1.8704 -0.4826 -3.7319 16 7 2.6265 -1.5519 -3.8525 17 14 1.2483 0.3984 -5.2572 18 1 2.2273 1.4392 -5.6615 19 1 1.0825 -0.5808 -6.3613 20 1 -0.0594 1.0369 -4.9613 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 0.4295 -2.1315 1.2406 25 1 1.2802 -3.2930 3.2672 26 1 3.3598 -2.4488 4.3373 27 1 4.5174 -0.5104 3.3546 28 1 3.8706 -1.2481 -2.0301 29 1 3.8710 0.2200 -1.2487 30 1 2.8602 -1.8838 -4.7335 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260944548.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:38 Heat of formation + Delta-G solvation = 1.445669 kcal Electronic energy + Delta-G solvation = -13275.926159 eV Core-core repulsion = 11069.610358 eV Total energy + Delta-G solvation = -2206.315801 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.00844 -37.60217 -34.50814 -33.16977 -32.33088 -30.44294 -27.58425 -25.59530 -24.09002 -23.52553 -20.94210 -18.69838 -17.47882 -17.00944 -16.74901 -16.13094 -15.61468 -15.09920 -14.90401 -14.48933 -14.19903 -13.72013 -13.30371 -12.98448 -12.86903 -12.59602 -12.38194 -12.18464 -11.99910 -11.57393 -11.33758 -10.66079 -10.56074 -10.06045 -9.61230 -9.07782 -8.06216 -6.30879 0.42251 0.60901 1.38568 1.40503 1.50016 2.39189 3.10085 3.11861 3.60694 4.00408 4.15683 4.32984 4.42054 4.45088 4.50003 4.67108 4.89428 4.93765 5.10998 5.17394 5.27649 5.35358 5.41078 5.48554 5.72301 5.77001 6.02070 6.17969 6.72555 7.03251 7.17973 7.38761 7.44899 8.88181 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.056487 B = 0.008630 C = 0.008225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.567623 B = 3243.771005 C = 3403.424807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.031 4.031 3 H 0.056 0.944 4 C 0.149 3.851 5 C -0.192 4.192 6 C -0.079 4.079 7 C -0.186 4.186 8 C 0.080 3.920 9 N -0.503 5.503 10 C 0.231 3.769 11 H 0.000 1.000 12 N -0.840 5.840 13 C -0.558 4.558 14 H 0.057 0.943 15 C 0.017 3.983 16 N -0.920 5.920 17 Si 0.957 3.043 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.268 1.268 21 H 0.056 0.944 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.135 0.865 25 H 0.161 0.839 26 H 0.165 0.835 27 H 0.171 0.829 28 H 0.337 0.663 29 H 0.313 0.687 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.129 -0.617 11.522 11.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.051 4.051 3 H 0.075 0.925 4 C 0.012 3.988 5 C -0.212 4.212 6 C -0.104 4.104 7 C -0.206 4.206 8 C -0.077 4.077 9 N -0.212 5.212 10 C 0.120 3.880 11 H 0.018 0.982 12 N -0.367 5.367 13 C -0.597 4.597 14 H 0.075 0.925 15 C -0.183 4.183 16 N -0.561 5.561 17 Si 0.783 3.217 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.192 1.192 21 H 0.075 0.925 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.152 0.848 25 H 0.178 0.822 26 H 0.182 0.818 27 H 0.188 0.812 28 H 0.151 0.849 29 H 0.122 0.878 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.678 -0.412 11.764 11.890 hybrid contribution -0.615 0.066 -1.828 1.930 sum -2.293 -0.346 9.936 10.203 Atomic orbital electron populations 1.21699 0.93318 1.01895 1.01452 1.20080 0.95988 0.98011 0.91026 0.92540 1.21256 0.90016 0.93310 0.94175 1.22156 1.02609 0.97689 0.98762 1.21899 0.95792 0.98820 0.93919 1.22384 0.96935 0.98476 1.02795 1.23224 0.99592 0.93392 0.91461 1.67438 1.12004 1.32487 1.09319 1.18725 0.86221 0.93205 0.89805 0.98186 1.59395 1.09379 1.17588 1.50299 1.22260 1.32076 1.12853 0.92540 0.92475 1.25768 0.95205 0.95359 1.01927 1.69877 1.37916 1.23908 1.24367 0.85581 0.78879 0.78192 0.79076 1.20480 1.21102 1.19233 0.92483 0.92083 0.92306 0.84753 0.82174 0.81781 0.81166 0.84926 0.87822 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.67 8.37 71.98 0.60 -4.06 16 2 C -0.03 -1.35 2.41 -11.54 -0.03 -1.38 16 3 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 4 C 0.15 5.96 5.39 42.55 0.23 6.19 16 5 C -0.19 -6.55 9.18 22.36 0.21 -6.34 16 6 C -0.08 -2.11 10.18 22.47 0.23 -1.88 16 7 C -0.19 -4.68 10.11 22.36 0.23 -4.46 16 8 C 0.08 2.45 11.18 84.67 0.95 3.40 16 9 N -0.50 -19.67 10.27 -183.88 -1.89 -21.56 16 10 C 0.23 11.81 2.29 44.17 0.10 11.92 16 11 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 12 N -0.84 -42.96 8.77 -171.82 -1.51 -44.47 16 13 C -0.56 -30.08 8.00 25.60 0.20 -29.88 16 14 H 0.06 3.02 6.71 -2.91 -0.02 3.00 16 15 C 0.02 0.91 5.38 84.66 0.46 1.37 16 16 N -0.92 -52.36 11.54 21.45 0.25 -52.11 16 17 Si 0.96 43.27 29.54 68.60 2.03 45.29 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 19 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 21 H 0.06 2.02 6.49 -2.39 -0.02 2.00 16 22 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 23 H 0.06 2.29 6.62 -2.39 -0.02 2.27 16 24 H 0.13 4.31 6.31 -2.91 -0.02 4.29 16 25 H 0.16 3.06 8.06 -2.91 -0.02 3.03 16 26 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 27 H 0.17 4.05 8.06 -2.91 -0.02 4.02 16 28 H 0.34 18.56 7.08 -89.70 -0.64 17.92 16 29 H 0.31 15.78 8.99 -89.69 -0.81 14.97 16 30 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -62.31 253.02 1.76 -60.55 By element: Atomic # 1 Polarization: 37.71 SS G_CDS: -0.29 Total: 37.42 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: 3.17 Total: -25.12 kcal Atomic # 7 Polarization: -115.00 SS G_CDS: -3.15 Total: -118.14 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Total: -62.31 1.76 -60.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260944548.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.996 kcal (2) G-P(sol) polarization free energy of solvation -62.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds