Wall clock time and date at job start Mon Mar 30 2020 02:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 110.68348 * 2 1 4 4 C 1.54345 * 110.78346 * 123.47921 * 2 1 3 5 5 C 1.51316 * 105.22104 * 91.73900 * 4 2 1 6 6 N 1.31039 * 142.35967 * 197.21876 * 5 4 2 7 7 N 1.40025 * 108.24664 * 180.02562 * 6 5 4 8 8 C 1.46502 * 126.03301 * 179.73793 * 7 6 5 9 9 C 1.34886 * 107.93500 * 0.02562 * 7 6 5 10 10 C 1.35460 * 107.77650 * 359.97438 * 9 7 6 11 11 C 1.51279 * 142.53237 * 180.02562 * 10 9 7 12 12 H 1.09007 * 110.29581 * 43.75194 * 11 10 9 13 13 C 1.50697 * 110.29761 * 281.71719 * 11 10 9 14 14 H 1.08003 * 120.00463 * 241.45592 * 13 11 10 15 15 C 1.37877 * 120.00155 * 61.44846 * 13 11 10 16 16 N 1.31522 * 119.99911 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 120.00352 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47018 * 90.00159 * 17 15 13 19 19 H 1.48502 * 109.47469 * 210.00288 * 17 15 13 20 20 H 1.48500 * 109.47024 * 330.00130 * 17 15 13 21 21 H 1.08999 * 109.47268 * 183.26872 * 1 2 3 22 22 H 1.09007 * 109.46855 * 303.26692 * 1 2 3 23 23 H 1.08995 * 109.47725 * 63.26654 * 1 2 3 24 24 H 1.08999 * 110.27668 * 332.80997 * 4 2 1 25 25 H 1.09006 * 110.31042 * 210.68586 * 4 2 1 26 26 H 1.09005 * 109.46913 * 90.01920 * 8 7 6 27 27 H 1.08988 * 109.47355 * 210.02321 * 8 7 6 28 28 H 1.09004 * 109.46975 * 330.02895 * 8 7 6 29 29 H 1.08000 * 126.10986 * 179.97438 * 9 7 6 30 30 H 0.97001 * 119.99957 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0197 0.0000 4 6 2.0776 -0.7960 1.2036 5 6 2.2600 -2.2095 0.6952 6 7 2.4197 -3.4454 1.1003 7 7 2.5261 -4.2667 -0.0288 8 6 2.7193 -5.7189 -0.0231 9 6 2.4256 -3.4839 -1.1227 10 6 2.2602 -2.2065 -0.7033 11 6 2.0772 -0.7917 -1.2067 12 1 1.3620 -0.7725 -2.0291 13 6 3.3988 -0.2198 -1.6510 14 1 3.8007 0.6549 -1.1613 15 6 4.0949 -0.8134 -2.6825 16 7 3.6053 -1.8784 -3.2791 17 14 5.7334 -0.1050 -3.2328 18 1 6.8313 -0.7379 -2.4586 19 1 5.9287 -0.3752 -4.6799 20 1 5.7430 1.3611 -2.9973 21 1 -0.3634 -1.0260 0.0586 22 1 -0.3633 0.5638 0.8593 23 1 -0.3634 0.4622 -0.9177 24 1 1.3614 -0.7792 2.0251 25 1 3.0338 -0.3839 1.5262 26 1 1.7484 -6.2145 -0.0194 27 1 3.2750 -6.0149 -0.9127 28 1 3.2779 -6.0076 0.8672 29 1 2.4693 -3.8162 -2.1494 30 1 4.0953 -2.2962 -4.0046 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260969742.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:26 Heat of formation + Delta-G solvation = 58.821079 kcal Electronic energy + Delta-G solvation = -13612.413111 eV Core-core repulsion = 11408.585295 eV Total energy + Delta-G solvation = -2203.827817 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.07194 -38.01164 -34.52008 -33.17626 -30.86260 -29.14969 -28.69478 -26.11656 -24.75445 -21.62071 -20.46415 -19.99538 -18.37042 -16.82160 -16.47405 -16.19386 -15.44582 -15.02315 -14.77018 -14.27229 -13.62747 -13.38203 -13.34768 -12.98626 -12.95399 -12.64932 -12.49905 -12.29682 -11.88657 -11.61283 -11.32212 -11.01933 -10.85396 -10.38023 -9.79858 -8.73914 -7.98424 -6.11591 1.23418 1.41803 1.43727 1.52216 1.89865 2.28845 2.49934 3.26331 3.47648 4.16441 4.24211 4.42472 4.47810 4.50451 4.60479 4.65255 4.88780 4.96439 5.02481 5.14698 5.31923 5.37277 5.49064 5.69027 5.74094 5.85716 5.98494 6.12963 6.41387 6.55266 6.98619 7.11997 7.53682 9.04270 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.025726 B = 0.014989 C = 0.010821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.141828 B = 1867.577268 C = 2586.956890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.085 4.085 3 H 0.083 0.917 4 C -0.009 4.009 5 C 0.018 3.982 6 N -0.328 5.328 7 N -0.397 5.397 8 C 0.104 3.896 9 C 0.057 3.943 10 C -0.207 4.207 11 C 0.112 3.888 12 H -0.002 1.002 13 C -0.519 4.519 14 H 0.056 0.944 15 C 0.018 3.982 16 N -0.905 5.905 17 Si 0.945 3.055 18 H -0.288 1.288 19 H -0.284 1.284 20 H -0.266 1.266 21 H 0.035 0.965 22 H 0.076 0.924 23 H 0.052 0.948 24 H 0.089 0.911 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.165 0.835 30 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.062 -2.485 4.928 6.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.104 4.104 3 H 0.102 0.898 4 C -0.048 4.048 5 C -0.148 4.148 6 N -0.151 5.151 7 N -0.183 5.183 8 C -0.036 4.036 9 C -0.086 4.086 10 C -0.218 4.218 11 C 0.093 3.907 12 H 0.016 0.984 13 C -0.558 4.558 14 H 0.075 0.925 15 C -0.181 4.181 16 N -0.543 5.543 17 Si 0.772 3.228 18 H -0.214 1.214 19 H -0.210 1.210 20 H -0.190 1.190 21 H 0.054 0.946 22 H 0.095 0.905 23 H 0.071 0.929 24 H 0.107 0.893 25 H 0.096 0.904 26 H 0.103 0.897 27 H 0.114 0.886 28 H 0.109 0.891 29 H 0.183 0.817 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.908 -3.566 5.763 7.375 hybrid contribution 1.119 0.359 -1.510 1.914 sum -1.789 -3.206 4.253 5.619 Atomic orbital electron populations 1.21691 0.94156 1.00734 1.01964 1.21960 0.95726 0.98765 0.93917 0.89826 1.20489 1.01525 0.84777 0.97993 1.23681 1.00200 0.94469 0.96462 1.76650 1.28214 1.01414 1.08865 1.48803 1.58735 1.08079 1.02638 1.21959 1.03471 0.73246 1.04882 1.21751 1.02964 0.91502 0.92385 1.21460 1.10049 0.96306 0.94007 1.17744 0.94309 0.86467 0.92184 0.98355 1.21505 1.05866 1.11970 1.16419 0.92543 1.25611 1.00413 0.95402 0.96701 1.70048 1.39272 1.21221 1.23805 0.85757 0.80729 0.79191 0.77101 1.21421 1.21014 1.19028 0.94567 0.90524 0.92866 0.89273 0.90373 0.89735 0.88606 0.89083 0.81737 0.93442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.28 9.10 71.98 0.65 -3.62 16 2 C -0.08 -3.38 3.16 -9.88 -0.03 -3.41 16 3 H 0.08 3.18 7.74 -2.39 -0.02 3.16 16 4 C -0.01 -0.34 6.29 30.50 0.19 -0.14 16 5 C 0.02 0.82 8.10 43.26 0.35 1.17 16 6 N -0.33 -14.96 12.58 -46.81 -0.59 -15.55 16 7 N -0.40 -16.71 4.01 -369.49 -1.48 -18.19 16 8 C 0.10 2.96 11.47 127.77 1.47 4.42 16 9 C 0.06 2.74 10.55 83.58 0.88 3.62 16 10 C -0.21 -10.46 5.46 -19.93 -0.11 -10.57 16 11 C 0.11 5.69 2.35 -11.65 -0.03 5.66 16 12 H 0.00 -0.09 7.91 -2.38 -0.02 -0.11 16 13 C -0.52 -28.40 8.53 25.60 0.22 -28.18 16 14 H 0.06 3.00 7.57 -2.91 -0.02 2.98 16 15 C 0.02 1.00 5.32 84.65 0.45 1.45 16 16 N -0.90 -50.88 11.13 21.45 0.24 -50.65 16 17 Si 0.95 43.79 29.54 68.60 2.03 45.82 16 18 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 22 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 23 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.09 2.88 7.91 -2.39 -0.02 2.86 16 25 H 0.08 2.96 8.14 -2.38 -0.02 2.94 16 26 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 27 H 0.10 2.35 8.14 -2.39 -0.02 2.34 16 28 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 29 H 0.17 7.90 7.43 -2.91 -0.02 7.88 16 30 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 Total: -1.00 -65.29 252.77 5.35 -59.93 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 1.11 Total: 8.24 kcal Atomic # 6 Polarization: -33.65 SS G_CDS: 4.05 Total: -29.61 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -1.83 Total: -84.39 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -65.29 5.35 -59.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260969742.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.756 kcal (2) G-P(sol) polarization free energy of solvation -65.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds