Wall clock time and date at job start Mon Mar 30 2020 01:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38624 * 120.44834 * 2 1 4 4 C 1.38578 * 118.39971 * 179.97438 * 3 2 1 5 5 C 1.50696 * 120.44586 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47055 * 124.99629 * 5 4 3 7 7 C 1.50706 * 109.47238 * 179.97438 * 6 5 4 8 8 H 1.07999 * 119.99515 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00176 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99883 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00043 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47216 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47389 * 119.99848 * 11 9 7 14 14 H 1.48501 * 109.47057 * 239.99829 * 11 9 7 15 15 N 1.32346 * 119.10340 * 0.26857 * 4 3 2 16 16 C 1.31784 * 120.81905 * 359.45027 * 15 4 3 17 17 C 1.50705 * 119.11988 * 180.30828 * 16 15 4 18 18 N 1.31806 * 121.75481 * 0.56881 * 16 15 4 19 19 H 1.08997 * 109.47410 * 89.99654 * 1 2 3 20 20 H 1.09004 * 109.46848 * 209.99796 * 1 2 3 21 21 H 1.09003 * 109.46811 * 329.99717 * 1 2 3 22 22 H 1.08004 * 120.79656 * 359.95844 * 3 2 1 23 23 H 1.09001 * 109.47328 * 4.99899 * 5 4 3 24 24 H 1.09004 * 109.47043 * 244.99709 * 5 4 3 25 25 H 1.09001 * 109.46832 * 59.99966 * 6 5 4 26 26 H 1.09000 * 109.47611 * 300.00263 * 6 5 4 27 27 H 0.97004 * 119.99507 * 180.02562 * 10 9 7 28 28 H 1.08998 * 109.46646 * 270.24922 * 17 16 15 29 29 H 1.08993 * 109.47026 * 30.25425 * 17 16 15 30 30 H 1.08997 * 109.46763 * 150.25168 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2095 1.1951 0.0000 4 6 3.5944 1.1455 0.0005 5 6 4.4040 2.4166 0.0012 6 6 5.3752 2.4020 1.1832 7 6 6.1853 3.6728 1.1835 8 1 6.0232 4.4166 0.4174 9 6 7.1333 3.8859 2.1616 10 7 7.3310 2.9798 3.0942 11 14 8.1368 5.4614 2.1624 12 1 7.7259 6.3106 1.0156 13 1 7.9037 6.1963 3.4316 14 1 9.5791 5.1296 2.0402 15 7 4.1964 -0.0331 -0.0044 16 6 3.4956 -1.1492 0.0011 17 6 4.2206 -2.4704 0.0023 18 7 2.1776 -1.1407 0.0005 19 1 -0.3634 0.0001 -1.0276 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3633 0.8900 0.5139 22 1 1.6899 2.1419 -0.0007 23 1 3.7356 3.2730 0.0906 24 1 4.9659 2.4899 -0.9300 25 1 6.0435 1.5455 1.0937 26 1 4.8134 2.3286 2.1143 27 1 7.9977 3.1299 3.7826 28 1 4.3957 -2.7895 -1.0251 29 1 5.1753 -2.3604 0.5165 30 1 3.6149 -3.2166 0.5163 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261000620.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:21 Heat of formation + Delta-G solvation = 20.229350 kcal Electronic energy + Delta-G solvation = -12699.204386 eV Core-core repulsion = 10493.703106 eV Total energy + Delta-G solvation = -2205.501280 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.73398 -34.99152 -34.00197 -32.78435 -30.27943 -29.02726 -27.84856 -25.48499 -22.24936 -21.95966 -20.20506 -17.18678 -16.39017 -15.31252 -15.07950 -14.70530 -14.42664 -13.34693 -13.26785 -13.06471 -12.63870 -12.45344 -12.13603 -12.06239 -11.96889 -11.16362 -10.97212 -10.63934 -10.49651 -10.21307 -9.83080 -9.49309 -9.12497 -8.87370 -8.67856 -8.33648 -5.99150 -4.02496 1.27773 1.48780 3.31698 3.38981 3.42786 4.07153 4.18016 4.43950 4.46675 4.76770 5.23490 5.36699 5.47304 5.49669 5.52700 5.63081 5.71088 5.75137 5.88922 6.05240 6.19645 6.40519 6.51072 6.77699 6.99686 7.48283 7.67535 7.84108 8.02077 8.38851 8.56072 9.04630 9.61282 11.12100 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.047954 B = 0.006901 C = 0.006323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.748025 B = 4056.171419 C = 4427.106474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.168 3.832 3 C -0.242 4.242 4 C 0.204 3.796 5 C -0.071 4.071 6 C 0.032 3.968 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.057 3.943 10 N -0.893 5.893 11 Si 0.893 3.107 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.284 1.284 15 N -0.512 5.512 16 C 0.316 3.684 17 C -0.082 4.082 18 N -0.539 5.539 19 H 0.080 0.920 20 H 0.078 0.922 21 H 0.078 0.922 22 H 0.142 0.858 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.032 0.968 26 H 0.012 0.988 27 H 0.260 0.740 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.782 -6.052 -6.152 13.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.022 3.978 3 C -0.264 4.264 4 C 0.059 3.941 5 C -0.109 4.109 6 C -0.005 4.005 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.144 4.144 10 N -0.532 5.532 11 Si 0.721 3.279 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.210 1.210 15 N -0.227 5.227 16 C 0.048 3.952 17 C -0.140 4.140 18 N -0.256 5.256 19 H 0.098 0.902 20 H 0.097 0.903 21 H 0.096 0.904 22 H 0.160 0.840 23 H 0.089 0.911 24 H 0.096 0.904 25 H 0.050 0.950 26 H 0.031 0.969 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.206 -6.947 -6.005 13.729 hybrid contribution 0.139 1.704 0.153 1.717 sum -10.067 -5.242 -5.852 12.770 Atomic orbital electron populations 1.20713 0.88376 1.03651 1.03134 1.21612 0.97156 0.88412 0.90586 1.22620 0.96085 1.00118 1.07622 1.22335 0.91312 0.94765 0.85700 1.20907 0.97948 0.89023 1.03012 1.19030 0.92942 0.97932 0.90603 1.21257 1.19594 1.03593 1.11652 0.92472 1.25020 0.97159 0.96688 0.95528 1.69997 1.34153 1.34214 1.14835 0.86523 0.80068 0.83452 0.77876 1.19705 1.21034 1.20972 1.68182 1.41491 0.98223 1.14822 1.23231 0.86535 0.94973 0.90428 1.20508 1.00071 0.90051 1.03376 1.68012 1.09897 1.30398 1.17330 0.90186 0.90331 0.90355 0.84024 0.91117 0.90442 0.94991 0.96922 0.93026 0.90088 0.89480 0.90122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.07 10.22 36.01 0.37 -0.71 16 2 C 0.17 2.60 6.82 -82.24 -0.56 2.04 16 3 C -0.24 -4.00 9.49 -39.31 -0.37 -4.37 16 4 C 0.20 4.04 6.20 -82.25 -0.51 3.53 16 5 C -0.07 -1.50 5.58 -27.89 -0.16 -1.66 16 6 C 0.03 0.86 4.84 -27.88 -0.14 0.73 16 7 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 10 N -0.89 -27.29 13.29 55.43 0.74 -26.56 16 11 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 N -0.51 -10.51 9.94 -6.99 -0.07 -10.58 16 16 C 0.32 5.66 7.64 -157.19 -1.20 4.46 16 17 C -0.08 -1.11 10.32 36.01 0.37 -0.74 16 18 N -0.54 -9.20 10.27 -6.98 -0.07 -9.27 16 19 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 20 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 21 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 22 H 0.14 1.93 8.01 -52.48 -0.42 1.51 16 23 H 0.07 1.36 7.94 -51.93 -0.41 0.94 16 24 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 25 H 0.03 0.92 7.99 -51.93 -0.41 0.51 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 265.13 15.07 4.00 4.00 Total: -1.00 -32.64 265.13 -7.21 -39.85 By element: Atomic # 1 Polarization: 0.40 SS G_CDS: -4.17 Total: -3.77 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -2.61 Total: -10.34 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: 0.60 Total: -46.41 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.64 -7.21 -39.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261000620.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.075 kcal (2) G-P(sol) polarization free energy of solvation -32.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds