Wall clock time and date at job start Mon Mar 30 2020 01:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38624 * 120.44834 * 2 1 4 4 C 1.38578 * 118.39971 * 179.97438 * 3 2 1 5 5 C 1.50696 * 120.44586 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47055 * 124.99629 * 5 4 3 7 7 C 1.50706 * 109.47238 * 179.97438 * 6 5 4 8 8 H 1.07999 * 119.99515 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00176 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99883 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00043 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47216 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47389 * 119.99848 * 11 9 7 14 14 H 1.48501 * 109.47057 * 239.99829 * 11 9 7 15 15 N 1.32346 * 119.10340 * 0.26857 * 4 3 2 16 16 C 1.31784 * 120.81905 * 359.45027 * 15 4 3 17 17 C 1.50705 * 119.11988 * 180.30828 * 16 15 4 18 18 N 1.31806 * 121.75481 * 0.56881 * 16 15 4 19 19 H 1.08997 * 109.47410 * 89.99654 * 1 2 3 20 20 H 1.09004 * 109.46848 * 209.99796 * 1 2 3 21 21 H 1.09003 * 109.46811 * 329.99717 * 1 2 3 22 22 H 1.08004 * 120.79656 * 359.95844 * 3 2 1 23 23 H 1.09001 * 109.47328 * 4.99899 * 5 4 3 24 24 H 1.09004 * 109.47043 * 244.99709 * 5 4 3 25 25 H 1.09001 * 109.46832 * 59.99966 * 6 5 4 26 26 H 1.09000 * 109.47611 * 300.00263 * 6 5 4 27 27 H 0.97004 * 119.99507 * 180.02562 * 10 9 7 28 28 H 1.08998 * 109.46646 * 270.24922 * 17 16 15 29 29 H 1.08993 * 109.47026 * 30.25425 * 17 16 15 30 30 H 1.08997 * 109.46763 * 150.25168 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2095 1.1951 0.0000 4 6 3.5944 1.1455 0.0005 5 6 4.4040 2.4166 0.0012 6 6 5.3752 2.4020 1.1832 7 6 6.1853 3.6728 1.1835 8 1 6.0232 4.4166 0.4174 9 6 7.1333 3.8859 2.1616 10 7 7.3310 2.9798 3.0942 11 14 8.1368 5.4614 2.1624 12 1 7.7259 6.3106 1.0156 13 1 7.9037 6.1963 3.4316 14 1 9.5791 5.1296 2.0402 15 7 4.1964 -0.0331 -0.0044 16 6 3.4956 -1.1492 0.0011 17 6 4.2206 -2.4704 0.0023 18 7 2.1776 -1.1407 0.0005 19 1 -0.3634 0.0001 -1.0276 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3633 0.8900 0.5139 22 1 1.6899 2.1419 -0.0007 23 1 3.7356 3.2730 0.0906 24 1 4.9659 2.4899 -0.9300 25 1 6.0435 1.5455 1.0937 26 1 4.8134 2.3286 2.1143 27 1 7.9977 3.1299 3.7826 28 1 4.3957 -2.7895 -1.0251 29 1 5.1753 -2.3604 0.5165 30 1 3.6149 -3.2166 0.5163 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261000620.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:21 Heat of formation + Delta-G solvation = -0.441740 kcal Electronic energy + Delta-G solvation = -12700.100751 eV Core-core repulsion = 10493.703106 eV Total energy + Delta-G solvation = -2206.397645 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.06281 -36.63914 -35.30139 -34.68829 -32.10943 -30.06954 -29.16914 -27.35336 -24.06185 -23.19952 -21.84670 -18.58862 -18.52329 -16.64861 -16.58349 -16.26728 -15.97737 -15.01844 -14.66554 -14.21782 -14.09938 -13.88421 -13.47377 -13.29482 -13.08740 -12.93880 -12.85322 -12.45928 -12.06984 -11.82536 -11.66127 -11.30562 -11.06368 -10.58391 -10.19896 -10.09747 -8.20622 -6.33342 -0.03271 0.13555 1.40954 1.41949 1.55423 2.40781 2.74349 3.02380 3.12878 3.14676 3.52097 4.09735 4.13954 4.38831 4.47126 4.60575 4.65243 4.68233 4.75881 4.76959 4.92930 5.03120 5.10849 5.15992 5.45739 5.59537 5.64870 5.82088 6.17464 6.18602 6.84006 7.21375 7.36497 8.91958 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.047954 B = 0.006901 C = 0.006323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.748025 B = 4056.171419 C = 4427.106474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.167 3.833 3 C -0.240 4.240 4 C 0.173 3.827 5 C -0.058 4.058 6 C 0.043 3.957 7 C -0.542 4.542 8 H 0.069 0.931 9 C -0.003 4.003 10 N -0.936 5.936 11 Si 0.971 3.029 12 H -0.257 1.257 13 H -0.278 1.278 14 H -0.280 1.280 15 N -0.553 5.553 16 C 0.300 3.700 17 C -0.079 4.079 18 N -0.544 5.544 19 H 0.102 0.898 20 H 0.084 0.916 21 H 0.100 0.900 22 H 0.173 0.827 23 H 0.092 0.908 24 H 0.077 0.923 25 H -0.006 1.006 26 H -0.019 1.019 27 H 0.263 0.737 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.258 -5.206 -6.987 15.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.021 3.979 3 C -0.261 4.261 4 C 0.029 3.971 5 C -0.096 4.096 6 C 0.005 3.995 7 C -0.580 4.580 8 H 0.087 0.913 9 C -0.201 4.201 10 N -0.577 5.577 11 Si 0.795 3.205 12 H -0.180 1.180 13 H -0.203 1.203 14 H -0.206 1.206 15 N -0.269 5.269 16 C 0.032 3.968 17 C -0.137 4.137 18 N -0.261 5.261 19 H 0.121 0.879 20 H 0.103 0.897 21 H 0.119 0.881 22 H 0.190 0.810 23 H 0.111 0.889 24 H 0.095 0.905 25 H 0.012 0.988 26 H -0.001 1.001 27 H 0.072 0.928 28 H 0.119 0.881 29 H 0.097 0.903 30 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.693 -6.098 -6.855 14.863 hybrid contribution 0.529 1.363 0.414 1.520 sum -11.164 -4.735 -6.441 13.731 Atomic orbital electron populations 1.20870 0.84481 1.05098 1.04931 1.22466 0.99525 0.87523 0.88396 1.22899 0.94624 1.02090 1.06488 1.22235 0.92851 0.94043 0.87997 1.20642 0.97387 0.91174 1.00351 1.18785 0.93074 0.96014 0.91624 1.21722 1.19970 1.04340 1.11988 0.91260 1.26062 0.98480 1.00573 0.94957 1.70150 1.35075 1.36687 1.15750 0.85308 0.77973 0.78707 0.78492 1.18038 1.20336 1.20569 1.68127 1.43060 0.99300 1.16446 1.23908 0.87314 0.95488 0.90049 1.20616 0.99582 0.88710 1.04775 1.68160 1.09409 1.31174 1.17393 0.87949 0.89703 0.88102 0.80973 0.88923 0.90489 0.98779 1.00095 0.92806 0.88129 0.90311 0.88220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.69 10.22 71.24 0.73 -0.96 16 2 C 0.17 4.80 6.82 42.58 0.29 5.09 16 3 C -0.24 -7.51 9.49 22.44 0.21 -7.30 16 4 C 0.17 6.90 6.20 42.56 0.26 7.16 16 5 C -0.06 -2.47 5.58 29.85 0.17 -2.31 16 6 C 0.04 2.36 4.84 29.85 0.14 2.51 16 7 C -0.54 -31.28 9.11 25.60 0.23 -31.04 16 8 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 9 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 10 N -0.94 -58.76 13.29 21.45 0.28 -58.48 16 11 Si 0.97 44.58 29.54 68.60 2.03 46.61 16 12 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 13 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 14 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 15 N -0.55 -23.32 9.94 -176.03 -1.75 -25.07 16 16 C 0.30 10.73 7.64 138.75 1.06 11.79 16 17 C -0.08 -2.12 10.32 71.24 0.74 -1.39 16 18 N -0.54 -17.87 10.27 -176.01 -1.81 -19.68 16 19 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 20 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 21 H 0.10 1.35 8.10 -2.39 -0.02 1.33 16 22 H 0.17 4.16 8.01 -2.91 -0.02 4.14 16 23 H 0.09 3.48 7.94 -2.39 -0.02 3.46 16 24 H 0.08 3.23 8.14 -2.38 -0.02 3.21 16 25 H -0.01 -0.39 7.99 -2.39 -0.02 -0.41 16 26 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 27 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 28 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -72.49 265.13 4.16 -68.33 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: 1.11 Total: 4.47 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: 4.30 Total: -16.17 kcal Atomic # 7 Polarization: -99.96 SS G_CDS: -3.27 Total: -103.23 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -72.49 4.16 -68.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261000620.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.883 kcal (2) G-P(sol) polarization free energy of solvation -72.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds