Wall clock time and date at job start Mon Mar 30 2020 02:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30789 * 125.72526 * 2 1 4 4 C 1.34424 * 109.32242 * 179.97438 * 3 2 1 5 5 C 1.33859 * 107.79895 * 359.97438 * 4 3 2 6 6 N 1.34408 * 125.72482 * 179.97438 * 2 1 3 7 7 C 1.46474 * 128.44172 * 0.17363 * 6 2 1 8 8 C 1.53264 * 108.71539 * 162.67109 * 7 6 2 9 9 C 1.53117 * 109.72064 * 50.71477 * 8 7 6 10 10 C 1.50711 * 128.68372 * 180.08478 * 5 4 3 11 11 H 1.08998 * 109.78004 * 283.91206 * 10 5 4 12 12 C 1.50702 * 109.74341 * 44.60281 * 10 5 4 13 13 H 1.07997 * 120.00048 * 33.93233 * 12 10 5 14 14 C 1.37887 * 119.99636 * 213.93687 * 12 10 5 15 15 N 1.31513 * 119.99244 * 184.61802 * 14 12 10 16 16 Si 1.86794 * 120.00167 * 4.60818 * 14 12 10 17 17 H 1.48499 * 109.47117 * 84.80509 * 16 14 12 18 18 H 1.48505 * 109.47095 * 204.80518 * 16 14 12 19 19 H 1.48499 * 109.47255 * 324.80518 * 16 14 12 20 20 H 1.09004 * 109.47579 * 269.99877 * 1 2 3 21 21 H 1.08998 * 109.47290 * 30.00037 * 1 2 3 22 22 H 1.09002 * 109.47323 * 149.99893 * 1 2 3 23 23 H 1.07998 * 126.10124 * 179.97438 * 4 3 2 24 24 H 1.08998 * 109.59970 * 282.39719 * 7 6 2 25 25 H 1.08995 * 109.60314 * 42.87482 * 7 6 2 26 26 H 1.08998 * 109.39831 * 290.65610 * 8 7 6 27 27 H 1.09004 * 109.45338 * 170.80845 * 8 7 6 28 28 H 1.08997 * 109.50089 * 170.18312 * 9 8 7 29 29 H 1.09003 * 109.49707 * 50.11556 * 9 8 7 30 30 H 0.97007 * 119.99366 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2706 1.0618 0.0000 4 6 3.5601 0.6822 0.0006 5 6 3.5927 -0.6560 0.0015 6 7 2.2917 -1.0912 0.0005 7 6 1.8921 -2.5003 -0.0024 8 6 3.0921 -3.3510 -0.4329 9 6 4.3187 -2.9743 0.4026 10 6 4.7918 -1.5690 0.0042 11 1 5.2364 -1.5970 -0.9906 12 6 5.8070 -1.0733 1.0016 13 1 5.4796 -0.5960 1.9134 14 6 7.1537 -1.2291 0.7499 15 7 8.0371 -0.8796 1.6592 16 14 7.7231 -1.9367 -0.8823 17 1 7.8010 -0.8509 -1.8924 18 1 9.0636 -2.5532 -0.7139 19 1 6.7575 -2.9687 -1.3383 20 1 -0.3634 0.0000 1.0277 21 1 -0.3634 0.8900 -0.5138 22 1 -0.3634 -0.8900 -0.5139 23 1 4.4170 1.3396 0.0003 24 1 1.5778 -2.7933 0.9994 25 1 1.0701 -2.6459 -0.7032 26 1 3.3028 -3.1723 -1.4873 27 1 2.8616 -4.4058 -0.2836 28 1 5.1180 -3.6924 0.2196 29 1 4.0555 -2.9847 1.4604 30 1 8.9846 -0.9888 1.4821 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261047444.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:53 Heat of formation + Delta-G solvation = 44.898255 kcal Electronic energy + Delta-G solvation = -13582.300144 eV Core-core repulsion = 11377.868588 eV Total energy + Delta-G solvation = -2204.431556 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.58506 -36.16231 -33.57758 -31.82626 -30.51167 -29.42310 -25.67412 -25.32395 -22.11636 -21.20695 -19.72828 -18.21053 -16.97272 -16.07305 -15.32912 -14.41379 -13.86982 -13.56062 -13.31020 -12.84587 -12.70777 -12.63164 -12.48379 -12.04906 -11.74189 -11.41502 -10.90469 -10.58777 -10.43097 -9.96962 -9.82832 -9.38158 -9.12591 -8.79397 -8.61881 -7.29837 -6.14157 -4.14646 2.83342 3.23402 3.31587 3.32904 3.42556 3.94125 4.34654 4.92349 4.97206 5.04299 5.13060 5.31110 5.40428 5.70458 5.72995 5.86390 5.91689 5.98364 6.08572 6.28803 6.41629 6.56717 6.69025 6.96007 7.03934 7.31324 7.61467 7.68461 7.97907 8.45792 8.86297 8.93841 9.46344 10.98518 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.042383 B = 0.011536 C = 0.010064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.491321 B = 2426.650567 C = 2781.402503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.168 3.832 3 N -0.499 5.499 4 C -0.031 4.031 5 C 0.028 3.972 6 N -0.461 5.461 7 C 0.111 3.889 8 C -0.138 4.138 9 C -0.120 4.120 10 C 0.083 3.917 11 H 0.048 0.952 12 C -0.503 4.503 13 H 0.077 0.923 14 C 0.075 3.925 15 N -0.893 5.893 16 Si 0.874 3.126 17 H -0.273 1.273 18 H -0.288 1.288 19 H -0.266 1.266 20 H 0.070 0.930 21 H 0.081 0.919 22 H 0.063 0.937 23 H 0.168 0.832 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.576 -5.101 -4.925 13.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.093 4.093 3 N -0.220 5.220 4 C -0.176 4.176 5 C -0.086 4.086 6 N -0.147 5.147 7 C -0.012 4.012 8 C -0.175 4.175 9 C -0.158 4.158 10 C 0.063 3.937 11 H 0.066 0.934 12 C -0.541 4.541 13 H 0.095 0.905 14 C -0.127 4.127 15 N -0.530 5.530 16 Si 0.701 3.299 17 H -0.199 1.199 18 H -0.214 1.214 19 H -0.191 1.191 20 H 0.089 0.911 21 H 0.100 0.900 22 H 0.082 0.918 23 H 0.185 0.815 24 H 0.094 0.906 25 H 0.096 0.904 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.714 -4.406 -4.873 13.430 hybrid contribution 0.763 -1.222 -0.737 1.618 sum -10.951 -5.628 -5.610 13.530 Atomic orbital electron populations 1.19986 0.86083 1.02871 1.02534 1.22833 0.95035 0.82033 1.09400 1.70322 1.02648 1.28242 1.20747 1.21736 0.93564 0.92893 1.09404 1.22002 0.84599 0.96142 1.05858 1.45279 1.07078 1.06443 1.55936 1.21793 0.98362 0.79080 1.01956 1.21980 0.95653 0.98626 1.01285 1.22049 0.95008 0.99582 0.99172 1.17961 0.89156 0.88822 0.97780 0.93395 1.20787 0.89055 1.39194 1.05104 0.90483 1.25033 0.96574 0.94655 0.96485 1.69891 1.01701 1.47610 1.33835 0.86907 0.78046 0.80043 0.84864 1.19871 1.21382 1.19067 0.91098 0.89972 0.91803 0.81475 0.90602 0.90405 0.91682 0.90809 0.91876 0.91923 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.72 10.24 36.00 0.37 -0.35 16 2 C 0.17 3.14 7.94 -155.75 -1.24 1.90 16 3 N -0.50 -10.93 11.27 -11.02 -0.12 -11.06 16 4 C -0.03 -0.71 11.42 -17.95 -0.20 -0.92 16 5 C 0.03 0.62 6.08 -81.73 -0.50 0.12 16 6 N -0.46 -8.77 3.13 -109.44 -0.34 -9.11 16 7 C 0.11 1.61 6.67 -3.92 -0.03 1.58 16 8 C -0.14 -2.10 5.91 -26.53 -0.16 -2.26 16 9 C -0.12 -2.37 5.27 -26.39 -0.14 -2.51 16 10 C 0.08 1.92 2.13 -92.64 -0.20 1.73 16 11 H 0.05 1.13 5.35 -51.93 -0.28 0.85 16 12 C -0.50 -13.78 8.54 -34.44 -0.29 -14.07 16 13 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 14 C 0.08 2.09 5.47 -17.82 -0.10 2.00 16 15 N -0.89 -26.62 13.96 55.43 0.77 -25.85 16 16 Si 0.87 20.73 26.98 -169.99 -4.59 16.15 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.27 -5.92 6.74 56.52 0.38 -5.54 16 20 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 21 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 22 H 0.06 0.66 7.59 -51.93 -0.39 0.27 16 23 H 0.17 3.88 8.06 -52.49 -0.42 3.46 16 24 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.08 0.89 7.72 -51.93 -0.40 0.49 16 26 H 0.06 1.01 8.11 -51.93 -0.42 0.59 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 1.25 8.05 -51.93 -0.42 0.83 16 29 H 0.06 1.28 8.08 -51.93 -0.42 0.86 16 30 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 247.87 15.07 3.74 3.74 Total: -1.00 -31.46 247.87 -7.05 -38.51 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -4.02 Total: 0.40 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -2.48 Total: -12.77 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: 0.31 Total: -46.02 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.59 Total: 16.15 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -31.46 -7.05 -38.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261047444.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.411 kcal (2) G-P(sol) polarization free energy of solvation -31.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds