Wall clock time and date at job start Mon Mar 30 2020 02:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30789 * 125.72526 * 2 1 4 4 C 1.34424 * 109.32242 * 179.97438 * 3 2 1 5 5 C 1.33859 * 107.79895 * 359.97438 * 4 3 2 6 6 N 1.34408 * 125.72482 * 179.97438 * 2 1 3 7 7 C 1.46474 * 128.44172 * 0.17363 * 6 2 1 8 8 C 1.53264 * 108.71539 * 162.67109 * 7 6 2 9 9 C 1.53117 * 109.72064 * 50.71477 * 8 7 6 10 10 C 1.50711 * 128.68372 * 180.08478 * 5 4 3 11 11 H 1.08998 * 109.78004 * 283.91206 * 10 5 4 12 12 C 1.50702 * 109.74341 * 44.60281 * 10 5 4 13 13 H 1.07997 * 120.00048 * 33.93233 * 12 10 5 14 14 C 1.37887 * 119.99636 * 213.93687 * 12 10 5 15 15 N 1.31513 * 119.99244 * 184.61802 * 14 12 10 16 16 Si 1.86794 * 120.00167 * 4.60818 * 14 12 10 17 17 H 1.48499 * 109.47117 * 84.80509 * 16 14 12 18 18 H 1.48505 * 109.47095 * 204.80518 * 16 14 12 19 19 H 1.48499 * 109.47255 * 324.80518 * 16 14 12 20 20 H 1.09004 * 109.47579 * 269.99877 * 1 2 3 21 21 H 1.08998 * 109.47290 * 30.00037 * 1 2 3 22 22 H 1.09002 * 109.47323 * 149.99893 * 1 2 3 23 23 H 1.07998 * 126.10124 * 179.97438 * 4 3 2 24 24 H 1.08998 * 109.59970 * 282.39719 * 7 6 2 25 25 H 1.08995 * 109.60314 * 42.87482 * 7 6 2 26 26 H 1.08998 * 109.39831 * 290.65610 * 8 7 6 27 27 H 1.09004 * 109.45338 * 170.80845 * 8 7 6 28 28 H 1.08997 * 109.50089 * 170.18312 * 9 8 7 29 29 H 1.09003 * 109.49707 * 50.11556 * 9 8 7 30 30 H 0.97007 * 119.99366 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2706 1.0618 0.0000 4 6 3.5601 0.6822 0.0006 5 6 3.5927 -0.6560 0.0015 6 7 2.2917 -1.0912 0.0005 7 6 1.8921 -2.5003 -0.0024 8 6 3.0921 -3.3510 -0.4329 9 6 4.3187 -2.9743 0.4026 10 6 4.7918 -1.5690 0.0042 11 1 5.2364 -1.5970 -0.9906 12 6 5.8070 -1.0733 1.0016 13 1 5.4796 -0.5960 1.9134 14 6 7.1537 -1.2291 0.7499 15 7 8.0371 -0.8796 1.6592 16 14 7.7231 -1.9367 -0.8823 17 1 7.8010 -0.8509 -1.8924 18 1 9.0636 -2.5532 -0.7139 19 1 6.7575 -2.9687 -1.3383 20 1 -0.3634 0.0000 1.0277 21 1 -0.3634 0.8900 -0.5138 22 1 -0.3634 -0.8900 -0.5139 23 1 4.4170 1.3396 0.0003 24 1 1.5778 -2.7933 0.9994 25 1 1.0701 -2.6459 -0.7032 26 1 3.3028 -3.1723 -1.4873 27 1 2.8616 -4.4058 -0.2836 28 1 5.1180 -3.6924 0.2196 29 1 4.0555 -2.9847 1.4604 30 1 8.9846 -0.9888 1.4821 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261047444.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:53 Heat of formation + Delta-G solvation = 24.441951 kcal Electronic energy + Delta-G solvation = -13583.187196 eV Core-core repulsion = 11377.868588 eV Total energy + Delta-G solvation = -2205.318608 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.12848 -37.68331 -35.33800 -33.66747 -31.88145 -30.93519 -27.12466 -27.08109 -23.78466 -22.75730 -21.25720 -19.73046 -19.01893 -17.57337 -16.74806 -16.32435 -15.39190 -15.01951 -14.82085 -14.47133 -14.22886 -14.10149 -13.67518 -13.49570 -13.07140 -12.98058 -12.62797 -12.25667 -11.94172 -11.74597 -11.49521 -11.29836 -10.86136 -10.70586 -10.26280 -8.97300 -8.30607 -6.35932 1.27973 1.34765 1.37248 1.46907 2.04361 2.26473 2.33104 3.03945 3.68938 3.72115 3.94530 4.01074 4.24824 4.42685 4.53259 4.60589 4.67645 4.70664 4.81056 4.91833 5.00230 5.09020 5.15460 5.33290 5.36851 5.61941 5.71637 5.93158 6.28127 6.57074 6.70403 7.27159 7.28162 8.86350 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.042383 B = 0.011536 C = 0.010064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.491321 B = 2426.650567 C = 2781.402503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.185 3.815 3 N -0.537 5.537 4 C -0.061 4.061 5 C 0.006 3.994 6 N -0.460 5.460 7 C 0.101 3.899 8 C -0.129 4.129 9 C -0.118 4.118 10 C 0.082 3.918 11 H 0.047 0.953 12 C -0.505 4.505 13 H 0.023 0.977 14 C 0.016 3.984 15 N -0.947 5.947 16 Si 0.943 3.057 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.236 1.236 20 H 0.088 0.912 21 H 0.090 0.910 22 H 0.101 0.899 23 H 0.145 0.855 24 H 0.093 0.907 25 H 0.124 0.876 26 H 0.067 0.933 27 H 0.116 0.884 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.385 -7.557 -6.857 17.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.078 4.078 3 N -0.258 5.258 4 C -0.206 4.206 5 C -0.109 4.109 6 N -0.145 5.145 7 C -0.020 4.020 8 C -0.167 4.167 9 C -0.156 4.156 10 C 0.062 3.938 11 H 0.065 0.935 12 C -0.543 4.543 13 H 0.041 0.959 14 C -0.182 4.182 15 N -0.586 5.586 16 Si 0.766 3.234 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.159 1.159 20 H 0.107 0.893 21 H 0.109 0.891 22 H 0.119 0.881 23 H 0.162 0.838 24 H 0.111 0.889 25 H 0.142 0.858 26 H 0.086 0.914 27 H 0.134 0.866 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.554 -6.891 -6.808 17.483 hybrid contribution 1.524 -0.381 -0.030 1.571 sum -13.030 -7.272 -6.838 16.414 Atomic orbital electron populations 1.20280 0.81440 1.05200 1.04385 1.23998 0.97277 0.81073 1.05404 1.70284 1.02140 1.30289 1.23098 1.21638 0.94159 0.93593 1.11187 1.21711 0.86288 0.95619 1.07308 1.45516 1.05462 1.08559 1.54957 1.22274 0.99292 0.75991 1.04397 1.21944 0.93384 1.01206 1.00144 1.21879 0.97580 0.96869 0.99303 1.17868 0.88628 0.91123 0.96167 0.93496 1.20914 0.90625 1.38490 1.04249 0.95902 1.25929 0.96485 0.95264 1.00516 1.70053 1.02143 1.49933 1.36474 0.85810 0.78089 0.79948 0.79579 1.19659 1.21022 1.15895 0.89316 0.89089 0.88063 0.83784 0.88893 0.85804 0.91436 0.86551 0.91928 0.93400 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.15 10.24 71.23 0.73 -0.42 16 2 C 0.18 6.47 7.94 138.24 1.10 7.57 16 3 N -0.54 -23.63 11.27 -188.78 -2.13 -25.76 16 4 C -0.06 -2.95 11.42 83.30 0.95 -2.00 16 5 C 0.01 0.26 6.08 40.73 0.25 0.51 16 6 N -0.46 -16.31 3.13 -500.17 -1.57 -17.88 16 7 C 0.10 2.41 6.67 86.47 0.58 2.99 16 8 C -0.13 -3.34 5.91 30.72 0.18 -3.15 16 9 C -0.12 -4.45 5.27 30.81 0.16 -4.29 16 10 C 0.08 3.83 2.13 -12.10 -0.03 3.81 16 11 H 0.05 2.18 5.35 -2.39 -0.01 2.16 16 12 C -0.50 -29.04 8.54 25.60 0.22 -28.82 16 13 H 0.02 1.51 8.06 -2.91 -0.02 1.49 16 14 C 0.02 0.90 5.47 84.66 0.46 1.36 16 15 N -0.95 -59.19 13.96 21.45 0.30 -58.89 16 16 Si 0.94 43.17 26.98 68.60 1.85 45.02 16 17 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 19 H -0.24 -9.58 6.74 99.48 0.67 -8.91 16 20 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 21 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 22 H 0.10 1.42 7.59 -2.39 -0.02 1.40 16 23 H 0.14 7.34 8.06 -2.91 -0.02 7.32 16 24 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.12 1.93 7.72 -2.39 -0.02 1.91 16 26 H 0.07 1.76 8.11 -2.39 -0.02 1.74 16 27 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.06 2.33 8.05 -2.39 -0.02 2.31 16 29 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 30 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 Total: -1.00 -74.17 247.87 4.14 -70.03 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 1.08 Total: 9.94 kcal Atomic # 6 Polarization: -27.06 SS G_CDS: 4.60 Total: -22.46 kcal Atomic # 7 Polarization: -99.13 SS G_CDS: -3.39 Total: -102.53 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.85 Total: 45.02 kcal Total: -74.17 4.14 -70.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261047444.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.470 kcal (2) G-P(sol) polarization free energy of solvation -74.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds