Wall clock time and date at job start Mon Mar 30 2020 02:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30784 * 125.72432 * 2 1 4 4 C 1.34425 * 109.32312 * 180.30751 * 3 2 1 5 5 C 1.33858 * 107.79378 * 0.02562 * 4 3 2 6 6 N 1.34410 * 125.72144 * 180.30600 * 2 1 3 7 7 C 1.46466 * 128.44755 * 359.58399 * 6 2 1 8 8 C 1.53277 * 108.70447 * 197.29298 * 7 6 2 9 9 C 1.53122 * 109.71088 * 309.27270 * 8 7 6 10 10 C 1.50717 * 128.67254 * 179.87628 * 5 4 3 11 11 H 1.08997 * 109.74615 * 76.19882 * 10 5 4 12 12 C 1.50690 * 109.74799 * 315.52049 * 10 5 4 13 13 H 1.08005 * 120.00352 * 324.86834 * 12 10 5 14 14 C 1.37879 * 120.00274 * 144.86748 * 12 10 5 15 15 N 1.31523 * 119.99636 * 5.21599 * 14 12 10 16 16 Si 1.86791 * 120.00383 * 185.21271 * 14 12 10 17 17 H 1.48507 * 109.47215 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47501 * 120.00309 * 16 14 12 19 19 H 1.48503 * 109.47399 * 240.00051 * 16 14 12 20 20 H 1.08997 * 109.47300 * 269.69558 * 1 2 3 21 21 H 1.08998 * 109.47212 * 29.69371 * 1 2 3 22 22 H 1.09000 * 109.47451 * 149.69229 * 1 2 3 23 23 H 1.08004 * 126.10252 * 180.02562 * 4 3 2 24 24 H 1.09002 * 109.59799 * 317.07013 * 7 6 2 25 25 H 1.09000 * 109.59921 * 77.52977 * 7 6 2 26 26 H 1.08994 * 109.43446 * 189.19586 * 8 7 6 27 27 H 1.08997 * 109.38596 * 69.31836 * 8 7 6 28 28 H 1.08999 * 109.50044 * 309.95490 * 9 8 7 29 29 H 1.09006 * 109.49652 * 189.85795 * 9 8 7 30 30 H 0.97003 * 119.99652 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2706 1.0618 0.0000 4 6 3.5601 0.6822 -0.0068 5 6 3.5927 -0.6560 -0.0117 6 7 2.2917 -1.0912 -0.0058 7 6 1.8922 -2.5003 -0.0050 8 6 3.0942 -3.3518 0.4185 9 6 4.3172 -2.9728 -0.4214 10 6 4.7919 -1.5689 -0.0226 11 1 5.2395 -1.6007 0.9707 12 6 5.8036 -1.0686 -1.0210 13 1 5.4730 -0.6046 -1.9386 14 6 7.1514 -1.2031 -0.7633 15 7 7.5546 -1.8586 0.3033 16 14 8.4045 -0.4547 -1.9289 17 1 7.6986 0.2259 -3.0442 18 1 9.2361 0.5324 -1.1945 19 1 9.2752 -1.5269 -2.4746 20 1 -0.3634 -0.0055 1.0276 21 1 -0.3633 0.8927 -0.5091 22 1 -0.3634 -0.8872 -0.5186 23 1 4.4170 1.3396 -0.0081 24 1 1.0732 -2.6477 0.6991 25 1 1.5732 -2.7905 -1.0061 26 1 2.8631 -4.4062 0.2673 27 1 3.3093 -3.1753 1.4724 28 1 4.0492 -2.9794 -1.4779 29 1 5.1173 -3.6916 -0.2440 30 1 8.5029 -1.9535 0.4844 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261047446.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:55 Heat of formation + Delta-G solvation = 41.100644 kcal Electronic energy + Delta-G solvation = -13529.687931 eV Core-core repulsion = 11325.091699 eV Total energy + Delta-G solvation = -2204.596232 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.45689 -35.95996 -33.54285 -31.65830 -30.34629 -29.06964 -25.52847 -25.17971 -22.30518 -21.03792 -19.70182 -18.03355 -16.52193 -15.92420 -15.14412 -14.57636 -13.73839 -13.35277 -13.02554 -12.85516 -12.69145 -12.42784 -12.34372 -11.94031 -11.35162 -11.21066 -10.93887 -10.55100 -10.28020 -10.18704 -9.50310 -9.27541 -9.03343 -8.68097 -8.50166 -7.20187 -6.10510 -4.14434 2.95334 3.27303 3.36293 3.41804 3.54469 4.03709 4.40481 5.05801 5.07447 5.15202 5.26454 5.40555 5.49499 5.76791 5.86712 6.01529 6.06115 6.10897 6.26987 6.49291 6.75233 6.77351 6.90373 7.18291 7.51060 7.61862 7.78623 7.84718 8.09618 8.30337 8.92615 8.98558 9.50321 10.97539 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.042230 B = 0.010776 C = 0.009143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.873063 B = 2597.655298 C = 3061.664617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.161 3.839 3 N -0.500 5.500 4 C -0.042 4.042 5 C 0.032 3.968 6 N -0.462 5.462 7 C 0.111 3.889 8 C -0.136 4.136 9 C -0.111 4.111 10 C 0.103 3.897 11 H 0.074 0.926 12 C -0.503 4.503 13 H 0.058 0.942 14 C 0.066 3.934 15 N -0.891 5.891 16 Si 0.894 3.106 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.284 1.284 20 H 0.068 0.932 21 H 0.080 0.920 22 H 0.063 0.937 23 H 0.165 0.835 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.881 -2.770 0.129 10.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.100 4.100 3 N -0.221 5.221 4 C -0.187 4.187 5 C -0.081 4.081 6 N -0.148 5.148 7 C -0.012 4.012 8 C -0.174 4.174 9 C -0.149 4.149 10 C 0.083 3.917 11 H 0.092 0.908 12 C -0.541 4.541 13 H 0.077 0.923 14 C -0.137 4.137 15 N -0.528 5.528 16 Si 0.722 3.278 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.211 1.211 20 H 0.087 0.913 21 H 0.099 0.901 22 H 0.082 0.918 23 H 0.182 0.818 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.065 -2.141 0.229 10.292 hybrid contribution 1.044 -0.508 -0.605 1.309 sum -9.020 -2.649 -0.376 9.409 Atomic orbital electron populations 1.19960 0.86259 1.02861 1.02284 1.22791 0.94964 0.82170 1.10029 1.70280 1.02741 1.28343 1.20713 1.21664 0.93386 0.93020 1.10632 1.22480 0.84953 0.96457 1.04248 1.45301 1.07189 1.06365 1.55945 1.21794 0.98535 0.79206 1.01625 1.21978 0.95612 0.98177 1.01618 1.21862 0.94675 1.00656 0.97717 1.17717 0.86801 0.87293 0.99844 0.90830 1.20950 0.89897 1.39074 1.04162 0.92333 1.24989 0.98602 0.94677 0.95387 1.69937 1.15564 1.40606 1.26735 0.86489 0.81182 0.79099 0.81027 1.19557 1.20777 1.21058 0.91313 0.90080 0.91842 0.81803 0.90633 0.90945 0.91217 0.91563 0.93351 0.91411 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.74 10.24 36.00 0.37 -0.37 16 2 C 0.16 3.13 7.94 -155.75 -1.24 1.89 16 3 N -0.50 -11.23 11.27 -11.02 -0.12 -11.35 16 4 C -0.04 -1.00 11.41 -17.95 -0.20 -1.20 16 5 C 0.03 0.76 6.08 -81.73 -0.50 0.26 16 6 N -0.46 -9.16 3.13 -109.44 -0.34 -9.50 16 7 C 0.11 1.73 6.61 -3.92 -0.03 1.70 16 8 C -0.14 -2.26 5.92 -26.52 -0.16 -2.41 16 9 C -0.11 -2.34 5.27 -26.42 -0.14 -2.48 16 10 C 0.10 2.54 2.58 -92.67 -0.24 2.30 16 11 H 0.07 2.00 7.38 -51.93 -0.38 1.62 16 12 C -0.50 -13.53 7.99 -34.44 -0.28 -13.80 16 13 H 0.06 1.62 7.82 -52.48 -0.41 1.21 16 14 C 0.07 1.78 5.45 -17.82 -0.10 1.68 16 15 N -0.89 -24.92 12.84 55.43 0.71 -24.21 16 16 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 21 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 22 H 0.06 0.71 7.96 -51.93 -0.41 0.30 16 23 H 0.16 3.85 8.06 -52.48 -0.42 3.43 16 24 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.07 1.14 8.11 -51.93 -0.42 0.72 16 28 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 29 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 252.16 15.07 3.80 3.80 Total: -1.00 -30.18 252.16 -7.62 -37.80 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -4.14 Total: -0.12 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -2.50 Total: -12.44 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: 0.24 Total: -45.07 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.18 -7.62 -37.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261047446.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.904 kcal (2) G-P(sol) polarization free energy of solvation -30.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds