Wall clock time and date at job start Mon Mar 30 2020 02:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30784 * 125.72432 * 2 1 4 4 C 1.34425 * 109.32312 * 180.30751 * 3 2 1 5 5 C 1.33858 * 107.79378 * 0.02562 * 4 3 2 6 6 N 1.34410 * 125.72144 * 180.30600 * 2 1 3 7 7 C 1.46466 * 128.44755 * 359.58399 * 6 2 1 8 8 C 1.53277 * 108.70447 * 197.29298 * 7 6 2 9 9 C 1.53122 * 109.71088 * 309.27270 * 8 7 6 10 10 C 1.50717 * 128.67254 * 179.87628 * 5 4 3 11 11 H 1.08997 * 109.74615 * 76.19882 * 10 5 4 12 12 C 1.50690 * 109.74799 * 315.52049 * 10 5 4 13 13 H 1.08005 * 120.00352 * 324.86834 * 12 10 5 14 14 C 1.37879 * 120.00274 * 144.86748 * 12 10 5 15 15 N 1.31523 * 119.99636 * 5.21599 * 14 12 10 16 16 Si 1.86791 * 120.00383 * 185.21271 * 14 12 10 17 17 H 1.48507 * 109.47215 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47501 * 120.00309 * 16 14 12 19 19 H 1.48503 * 109.47399 * 240.00051 * 16 14 12 20 20 H 1.08997 * 109.47300 * 269.69558 * 1 2 3 21 21 H 1.08998 * 109.47212 * 29.69371 * 1 2 3 22 22 H 1.09000 * 109.47451 * 149.69229 * 1 2 3 23 23 H 1.08004 * 126.10252 * 180.02562 * 4 3 2 24 24 H 1.09002 * 109.59799 * 317.07013 * 7 6 2 25 25 H 1.09000 * 109.59921 * 77.52977 * 7 6 2 26 26 H 1.08994 * 109.43446 * 189.19586 * 8 7 6 27 27 H 1.08997 * 109.38596 * 69.31836 * 8 7 6 28 28 H 1.08999 * 109.50044 * 309.95490 * 9 8 7 29 29 H 1.09006 * 109.49652 * 189.85795 * 9 8 7 30 30 H 0.97003 * 119.99652 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2706 1.0618 0.0000 4 6 3.5601 0.6822 -0.0068 5 6 3.5927 -0.6560 -0.0117 6 7 2.2917 -1.0912 -0.0058 7 6 1.8922 -2.5003 -0.0050 8 6 3.0942 -3.3518 0.4185 9 6 4.3172 -2.9728 -0.4214 10 6 4.7919 -1.5689 -0.0226 11 1 5.2395 -1.6007 0.9707 12 6 5.8036 -1.0686 -1.0210 13 1 5.4730 -0.6046 -1.9386 14 6 7.1514 -1.2031 -0.7633 15 7 7.5546 -1.8586 0.3033 16 14 8.4045 -0.4547 -1.9289 17 1 7.6986 0.2259 -3.0442 18 1 9.2361 0.5324 -1.1945 19 1 9.2752 -1.5269 -2.4746 20 1 -0.3634 -0.0055 1.0276 21 1 -0.3633 0.8927 -0.5091 22 1 -0.3634 -0.8872 -0.5186 23 1 4.4170 1.3396 -0.0081 24 1 1.0732 -2.6477 0.6991 25 1 1.5732 -2.7905 -1.0061 26 1 2.8631 -4.4062 0.2673 27 1 3.3093 -3.1753 1.4724 28 1 4.0492 -2.9794 -1.4779 29 1 5.1173 -3.6916 -0.2440 30 1 8.5029 -1.9535 0.4844 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261047446.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:54 Heat of formation + Delta-G solvation = 23.091906 kcal Electronic energy + Delta-G solvation = -13530.468849 eV Core-core repulsion = 11325.091699 eV Total energy + Delta-G solvation = -2205.377150 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.06425 -37.57212 -35.34596 -33.41999 -31.80556 -30.64277 -27.08527 -26.98514 -24.00895 -22.68553 -21.27691 -19.59986 -18.55133 -17.50479 -16.65021 -16.48260 -15.25317 -14.83009 -14.69222 -14.57330 -14.12135 -13.96571 -13.60992 -13.25646 -12.96589 -12.92232 -12.72017 -12.28792 -12.11744 -11.75905 -11.33616 -11.20169 -10.78558 -10.53287 -10.22367 -8.94682 -8.17591 -6.28226 1.33629 1.38775 1.42040 1.53140 2.08620 2.30003 2.43119 3.11409 3.72454 3.75547 3.99643 4.08861 4.30081 4.51249 4.60109 4.71089 4.74970 4.81714 4.82690 5.04049 5.09433 5.16534 5.25201 5.49392 5.53660 5.75770 5.81399 6.00271 6.27479 6.62846 6.83059 7.31414 7.38817 8.89456 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.042230 B = 0.010776 C = 0.009143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.873063 B = 2597.655298 C = 3061.664617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.180 3.820 3 N -0.535 5.535 4 C -0.066 4.066 5 C 0.008 3.992 6 N -0.462 5.462 7 C 0.105 3.895 8 C -0.128 4.128 9 C -0.104 4.104 10 C 0.103 3.897 11 H 0.036 0.964 12 C -0.515 4.515 13 H 0.043 0.957 14 C 0.019 3.981 15 N -0.920 5.920 16 Si 0.955 3.045 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.275 1.275 20 H 0.093 0.907 21 H 0.089 0.911 22 H 0.096 0.904 23 H 0.147 0.853 24 H 0.120 0.880 25 H 0.096 0.904 26 H 0.110 0.890 27 H 0.056 0.944 28 H 0.044 0.956 29 H 0.047 0.953 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.330 -3.780 -0.298 12.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.083 4.083 3 N -0.256 5.256 4 C -0.211 4.211 5 C -0.107 4.107 6 N -0.147 5.147 7 C -0.016 4.016 8 C -0.165 4.165 9 C -0.143 4.143 10 C 0.083 3.917 11 H 0.054 0.946 12 C -0.553 4.553 13 H 0.061 0.939 14 C -0.180 4.180 15 N -0.559 5.559 16 Si 0.780 3.220 17 H -0.196 1.196 18 H -0.204 1.204 19 H -0.201 1.201 20 H 0.111 0.889 21 H 0.107 0.893 22 H 0.115 0.885 23 H 0.165 0.835 24 H 0.138 0.862 25 H 0.114 0.886 26 H 0.129 0.871 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.520 -3.174 -0.200 12.917 hybrid contribution 1.708 -0.180 -0.455 1.777 sum -10.811 -3.354 -0.654 11.338 Atomic orbital electron populations 1.20258 0.81540 1.04938 1.04490 1.23984 0.97253 0.81141 1.05885 1.70263 1.02173 1.30162 1.23034 1.21614 0.94105 0.93475 1.11864 1.22098 0.86375 0.96006 1.06199 1.45527 1.05687 1.08402 1.55101 1.22212 0.98900 0.76209 1.04288 1.21901 0.93895 1.00868 0.99854 1.21641 0.96441 0.97823 0.98350 1.17514 0.87186 0.89824 0.97180 0.94614 1.21139 0.91069 1.38976 1.04145 0.93854 1.25684 1.00256 0.95131 0.96912 1.70034 1.15941 1.41751 1.28171 0.85558 0.78914 0.78458 0.79071 1.19627 1.20425 1.20077 0.88887 0.89254 0.88545 0.83548 0.86244 0.88609 0.87143 0.92545 0.93703 0.93440 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.20 10.24 71.24 0.73 -0.47 16 2 C 0.18 6.52 7.94 138.24 1.10 7.61 16 3 N -0.53 -23.88 11.27 -188.78 -2.13 -26.01 16 4 C -0.07 -3.25 11.41 83.30 0.95 -2.30 16 5 C 0.01 0.39 6.08 40.73 0.25 0.64 16 6 N -0.46 -17.34 3.13 -500.15 -1.57 -18.91 16 7 C 0.10 2.79 6.61 86.48 0.57 3.36 16 8 C -0.13 -3.90 5.92 30.73 0.18 -3.72 16 9 C -0.10 -4.41 5.27 30.80 0.16 -4.25 16 10 C 0.10 5.24 2.58 -12.12 -0.03 5.21 16 11 H 0.04 2.07 7.38 -2.39 -0.02 2.05 16 12 C -0.51 -28.84 7.99 25.60 0.20 -28.64 16 13 H 0.04 2.50 7.82 -2.91 -0.02 2.47 16 14 C 0.02 1.09 5.45 84.65 0.46 1.55 16 15 N -0.92 -53.22 12.84 21.45 0.28 -52.95 16 16 Si 0.95 44.27 29.54 68.60 2.03 46.29 16 17 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 19 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 20 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 21 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 22 H 0.10 1.55 7.96 -2.39 -0.02 1.53 16 23 H 0.15 7.41 8.06 -2.91 -0.02 7.39 16 24 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.10 2.19 8.14 -2.39 -0.02 2.18 16 26 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.06 1.85 8.11 -2.39 -0.02 1.83 16 28 H 0.04 1.89 8.08 -2.39 -0.02 1.87 16 29 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 30 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -68.80 252.16 4.30 -64.50 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 1.11 Total: 8.06 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: 4.58 Total: -20.99 kcal Atomic # 7 Polarization: -94.45 SS G_CDS: -3.42 Total: -97.87 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -68.80 4.30 -64.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261047446.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.597 kcal (2) G-P(sol) polarization free energy of solvation -68.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds