Wall clock time and date at job start Mon Mar 30 2020 02:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.51393 * 2 1 4 4 C 1.53134 * 109.54919 * 239.88161 * 2 1 3 5 5 C 1.53268 * 109.70464 * 170.38268 * 4 2 1 6 6 N 1.46560 * 108.73332 * 50.81512 * 5 4 2 7 7 C 1.35461 * 128.12825 * 162.55000 * 6 5 4 8 8 N 1.30422 * 109.49883 * 179.97438 * 7 6 5 9 9 C 1.36265 * 109.19268 * 0.33996 * 8 7 6 10 10 C 1.41230 * 126.56360 * 179.86686 * 9 8 7 11 11 H 1.07995 * 119.99927 * 173.93680 * 10 9 8 12 12 C 1.39717 * 119.99967 * 354.21522 * 10 9 8 13 13 N 1.31015 * 120.00078 * 5.68304 * 12 10 9 14 14 Si 1.86798 * 119.99722 * 185.68046 * 12 10 9 15 15 H 1.48495 * 109.47323 * 94.97980 * 14 12 10 16 16 H 1.48501 * 109.47284 * 214.98162 * 14 12 10 17 17 H 1.48502 * 109.47080 * 334.97909 * 14 12 10 18 18 C 1.36375 * 124.21165 * 342.63388 * 6 5 4 19 19 C 1.50613 * 124.52868 * 359.81405 * 18 6 5 20 20 H 1.09001 * 109.46984 * 299.89831 * 1 2 3 21 21 H 1.08997 * 109.47383 * 59.89889 * 1 2 3 22 22 H 1.09005 * 109.47224 * 179.89924 * 1 2 3 23 23 H 1.09003 * 109.43213 * 290.45047 * 4 2 1 24 24 H 1.08993 * 109.42971 * 50.35688 * 4 2 1 25 25 H 1.08998 * 109.59561 * 170.59319 * 5 4 2 26 26 H 1.08996 * 109.59220 * 290.89180 * 5 4 2 27 27 H 1.07997 * 125.25513 * 0.19204 * 7 6 5 28 28 H 0.97003 * 119.99972 * 180.02562 * 13 12 10 29 29 H 1.09001 * 109.73826 * 104.05207 * 19 18 6 30 30 H 1.08989 * 109.74039 * 224.76745 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0424 -0.7241 -1.2482 5 6 3.5559 -0.5211 -1.3787 6 7 4.1886 -0.8640 -0.1019 7 6 5.4930 -1.1395 0.1378 8 7 5.6578 -1.3969 1.4057 9 6 4.4560 -1.3050 2.0413 10 6 4.2134 -1.5145 3.4168 11 1 3.2345 -1.3184 3.8285 12 6 5.2416 -1.9699 4.2460 13 7 6.4570 -2.0963 3.7733 14 14 4.8833 -2.3985 6.0285 15 1 4.6234 -3.8559 6.1446 16 1 6.0522 -2.0356 6.8695 17 1 3.6894 -1.6446 6.4885 18 6 3.5208 -0.9605 1.0832 19 6 2.0427 -0.7257 1.2519 20 1 -0.3633 0.5123 0.8909 21 1 -0.3634 0.5154 -0.8890 22 1 -0.3634 -1.0277 -0.0018 23 1 1.8253 -1.7890 -1.1645 24 1 1.5457 -0.3210 -2.1307 25 1 3.9451 -1.1680 -2.1649 26 1 3.7652 0.5199 -1.6249 27 1 6.2765 -1.1419 -0.6056 28 1 7.1707 -2.4129 4.3489 29 1 1.5283 -1.6805 1.3605 30 1 1.8661 -0.1091 2.1331 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261052562.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:29 Heat of formation + Delta-G solvation = 39.831486 kcal Electronic energy + Delta-G solvation = -13424.911425 eV Core-core repulsion = 11220.260158 eV Total energy + Delta-G solvation = -2204.651267 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.28113 -36.35749 -33.37673 -31.89192 -29.52307 -28.30646 -26.25927 -23.96627 -22.78056 -20.42931 -19.56682 -17.93246 -16.75174 -15.20741 -14.78177 -14.52447 -14.09110 -13.56661 -13.01542 -12.65660 -12.51446 -12.27291 -11.84452 -11.74387 -11.13797 -10.95314 -10.89466 -10.36070 -10.30537 -10.19251 -10.08646 -9.72367 -9.04201 -7.90575 -7.78015 -6.77690 -6.11856 -3.87696 3.19130 3.30981 3.34652 3.63162 4.15917 4.31684 4.73599 5.02115 5.08380 5.19504 5.57099 5.62684 5.73313 5.85379 5.90919 5.99480 6.05124 6.10981 6.23489 6.30507 6.41139 6.55934 6.76290 6.88934 7.31287 7.61788 7.90968 8.12600 8.54783 8.89228 9.23618 9.43673 10.12689 10.82866 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.041714 B = 0.010412 C = 0.008476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.083341 B = 2688.648760 C = 3302.479764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 H 0.065 0.935 4 C -0.120 4.120 5 C 0.117 3.883 6 N -0.470 5.470 7 C 0.137 3.863 8 N -0.461 5.461 9 C 0.203 3.797 10 C -0.452 4.452 11 H 0.074 0.926 12 C 0.075 3.925 13 N -0.774 5.774 14 Si 0.898 3.102 15 H -0.276 1.276 16 H -0.282 1.282 17 H -0.266 1.266 18 C -0.196 4.196 19 C 0.002 3.998 20 H 0.055 0.945 21 H 0.047 0.953 22 H 0.053 0.947 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.171 0.829 28 H 0.264 0.736 29 H 0.050 0.950 30 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.777 2.704 -7.612 11.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 H 0.084 0.916 4 C -0.158 4.158 5 C -0.007 4.007 6 N -0.163 5.163 7 C -0.143 4.143 8 N -0.184 5.184 9 C 0.079 3.921 10 C -0.487 4.487 11 H 0.092 0.908 12 C -0.143 4.143 13 N -0.401 5.401 14 Si 0.724 3.276 15 H -0.201 1.201 16 H -0.208 1.208 17 H -0.191 1.191 18 C -0.303 4.303 19 C -0.037 4.037 20 H 0.074 0.926 21 H 0.067 0.933 22 H 0.072 0.928 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.188 0.812 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.843 2.481 -7.302 10.310 hybrid contribution -0.708 -0.018 0.242 0.748 sum -7.551 2.463 -7.060 10.627 Atomic orbital electron populations 1.21811 0.95543 1.01542 1.01117 1.21239 0.94822 0.99600 0.95687 0.91616 1.21808 0.94161 1.01565 0.98241 1.21489 0.93488 0.99791 0.85908 1.44723 1.08306 1.56681 1.06559 1.24780 0.84366 1.08515 0.96602 1.71413 1.25675 1.20322 1.00990 1.18032 0.85790 0.95521 0.92723 1.18432 0.97131 1.42584 0.90595 0.90833 1.25761 0.94723 0.94483 0.99295 1.70115 1.00130 1.34368 1.35494 0.86495 0.78545 0.79104 0.83493 1.20125 1.20755 1.19074 1.20722 0.94342 1.29034 0.86203 1.19579 0.90223 0.98337 0.95524 0.92630 0.93348 0.92804 0.91447 0.91387 0.91351 0.92183 0.81238 0.92511 0.93145 0.92030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.17 37.16 0.34 -1.46 16 2 C -0.09 -1.49 2.75 -90.29 -0.25 -1.74 16 3 H 0.07 1.07 8.12 -51.93 -0.42 0.65 16 4 C -0.12 -1.74 5.22 -26.52 -0.14 -1.88 16 5 C 0.12 1.89 7.00 -3.87 -0.03 1.87 16 6 N -0.47 -10.36 3.14 -112.88 -0.35 -10.72 16 7 C 0.14 3.31 12.61 -90.06 -1.14 2.17 16 8 N -0.46 -13.43 9.56 -12.20 -0.12 -13.54 16 9 C 0.20 5.90 6.67 -84.76 -0.57 5.33 16 10 C -0.45 -13.22 9.23 -37.89 -0.35 -13.57 16 11 H 0.07 2.04 7.85 -52.49 -0.41 1.62 16 12 C 0.08 2.13 5.49 -17.35 -0.10 2.03 16 13 N -0.77 -23.01 11.97 55.54 0.67 -22.34 16 14 Si 0.90 20.72 29.56 -169.99 -5.03 15.69 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 17 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 18 C -0.20 -4.84 6.69 -80.61 -0.54 -5.38 16 19 C 0.00 0.04 5.46 -27.66 -0.15 -0.12 16 20 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.07 1.03 8.12 -51.93 -0.42 0.61 16 24 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.17 3.35 8.06 -52.49 -0.42 2.93 16 28 H 0.26 7.22 8.30 -40.82 -0.34 6.88 16 29 H 0.05 1.01 8.11 -51.93 -0.42 0.58 16 30 H 0.06 1.26 8.14 -51.94 -0.42 0.84 16 LS Contribution 251.36 15.07 3.79 3.79 Total: -1.00 -33.08 251.36 -8.14 -41.22 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -4.19 Total: -1.36 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -2.91 Total: -12.74 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 0.19 Total: -46.60 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -33.08 -8.14 -41.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261052562.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.052 kcal (2) G-P(sol) polarization free energy of solvation -33.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds