Wall clock time and date at job start Mon Mar 30 2020 02:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.51393 * 2 1 4 4 C 1.53134 * 109.54919 * 239.88161 * 2 1 3 5 5 C 1.53268 * 109.70464 * 170.38268 * 4 2 1 6 6 N 1.46560 * 108.73332 * 50.81512 * 5 4 2 7 7 C 1.35461 * 128.12825 * 162.55000 * 6 5 4 8 8 N 1.30422 * 109.49883 * 179.97438 * 7 6 5 9 9 C 1.36265 * 109.19268 * 0.33996 * 8 7 6 10 10 C 1.41230 * 126.56360 * 179.86686 * 9 8 7 11 11 H 1.07995 * 119.99927 * 173.93680 * 10 9 8 12 12 C 1.39717 * 119.99967 * 354.21522 * 10 9 8 13 13 N 1.31015 * 120.00078 * 5.68304 * 12 10 9 14 14 Si 1.86798 * 119.99722 * 185.68046 * 12 10 9 15 15 H 1.48495 * 109.47323 * 94.97980 * 14 12 10 16 16 H 1.48501 * 109.47284 * 214.98162 * 14 12 10 17 17 H 1.48502 * 109.47080 * 334.97909 * 14 12 10 18 18 C 1.36375 * 124.21165 * 342.63388 * 6 5 4 19 19 C 1.50613 * 124.52868 * 359.81405 * 18 6 5 20 20 H 1.09001 * 109.46984 * 299.89831 * 1 2 3 21 21 H 1.08997 * 109.47383 * 59.89889 * 1 2 3 22 22 H 1.09005 * 109.47224 * 179.89924 * 1 2 3 23 23 H 1.09003 * 109.43213 * 290.45047 * 4 2 1 24 24 H 1.08993 * 109.42971 * 50.35688 * 4 2 1 25 25 H 1.08998 * 109.59561 * 170.59319 * 5 4 2 26 26 H 1.08996 * 109.59220 * 290.89180 * 5 4 2 27 27 H 1.07997 * 125.25513 * 0.19204 * 7 6 5 28 28 H 0.97003 * 119.99972 * 180.02562 * 13 12 10 29 29 H 1.09001 * 109.73826 * 104.05207 * 19 18 6 30 30 H 1.08989 * 109.74039 * 224.76745 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0424 -0.7241 -1.2482 5 6 3.5559 -0.5211 -1.3787 6 7 4.1886 -0.8640 -0.1019 7 6 5.4930 -1.1395 0.1378 8 7 5.6578 -1.3969 1.4057 9 6 4.4560 -1.3050 2.0413 10 6 4.2134 -1.5145 3.4168 11 1 3.2345 -1.3184 3.8285 12 6 5.2416 -1.9699 4.2460 13 7 6.4570 -2.0963 3.7733 14 14 4.8833 -2.3985 6.0285 15 1 4.6234 -3.8559 6.1446 16 1 6.0522 -2.0356 6.8695 17 1 3.6894 -1.6446 6.4885 18 6 3.5208 -0.9605 1.0832 19 6 2.0427 -0.7257 1.2519 20 1 -0.3633 0.5123 0.8909 21 1 -0.3634 0.5154 -0.8890 22 1 -0.3634 -1.0277 -0.0018 23 1 1.8253 -1.7890 -1.1645 24 1 1.5457 -0.3210 -2.1307 25 1 3.9451 -1.1680 -2.1649 26 1 3.7652 0.5199 -1.6249 27 1 6.2765 -1.1419 -0.6056 28 1 7.1707 -2.4129 4.3489 29 1 1.5283 -1.6805 1.3605 30 1 1.8661 -0.1091 2.1331 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261052562.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:29 Heat of formation + Delta-G solvation = 19.883500 kcal Electronic energy + Delta-G solvation = -13425.776435 eV Core-core repulsion = 11220.260158 eV Total energy + Delta-G solvation = -2205.516277 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.10173 -37.79426 -35.30893 -33.59737 -31.25702 -29.93361 -27.91977 -25.79356 -24.17865 -22.05262 -21.35250 -19.53398 -18.68100 -17.11355 -16.45845 -16.14057 -15.39279 -15.01272 -14.65678 -14.42631 -14.06451 -13.91090 -13.08558 -13.06542 -12.85014 -12.78857 -12.39518 -12.25505 -11.85799 -11.63793 -11.49427 -11.35979 -11.04028 -9.88745 -9.68146 -8.79148 -8.17679 -5.99781 1.35860 1.41010 1.55544 1.77113 2.35367 2.57292 2.70886 3.74212 3.82290 3.86046 3.96302 4.29286 4.33982 4.45866 4.52366 4.75905 4.82026 4.90286 4.94124 5.01564 5.09953 5.22282 5.31786 5.40895 5.51927 5.59854 5.97818 6.16835 6.45866 7.00503 7.20932 7.38542 8.16433 8.79453 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.041714 B = 0.010412 C = 0.008476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.083341 B = 2688.648760 C = 3302.479764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.089 4.089 3 H 0.062 0.938 4 C -0.116 4.116 5 C 0.104 3.896 6 N -0.463 5.463 7 C 0.129 3.871 8 N -0.518 5.518 9 C 0.141 3.859 10 C -0.489 4.489 11 H 0.072 0.928 12 C 0.021 3.979 13 N -0.822 5.822 14 Si 0.978 3.022 15 H -0.269 1.269 16 H -0.275 1.275 17 H -0.257 1.257 18 C -0.182 4.182 19 C -0.002 4.002 20 H 0.055 0.945 21 H 0.076 0.924 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.113 0.887 25 H 0.097 0.903 26 H 0.082 0.918 27 H 0.208 0.792 28 H 0.266 0.734 29 H 0.051 0.949 30 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.683 3.249 -9.260 13.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.108 4.108 3 H 0.080 0.920 4 C -0.153 4.153 5 C -0.017 4.017 6 N -0.153 5.153 7 C -0.152 4.152 8 N -0.242 5.242 9 C 0.017 3.983 10 C -0.524 4.524 11 H 0.090 0.910 12 C -0.192 4.192 13 N -0.450 5.450 14 Si 0.800 3.200 15 H -0.194 1.194 16 H -0.200 1.200 17 H -0.181 1.181 18 C -0.292 4.292 19 C -0.041 4.041 20 H 0.074 0.926 21 H 0.095 0.905 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.131 0.869 25 H 0.115 0.885 26 H 0.100 0.900 27 H 0.225 0.775 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.777 3.044 -9.007 12.940 hybrid contribution -0.177 -0.124 0.553 0.593 sum -8.954 2.920 -8.455 12.656 Atomic orbital electron populations 1.21753 0.92727 1.02259 1.02586 1.21200 0.97137 0.98651 0.93815 0.91981 1.21855 0.93030 1.01183 0.99256 1.22028 0.94495 1.01743 0.83483 1.45036 1.07685 1.54579 1.08004 1.25371 0.86105 1.07582 0.96117 1.71248 1.26932 1.22496 1.03500 1.18567 0.87315 0.98452 0.93994 1.18751 0.97555 1.44322 0.91810 0.90971 1.26688 0.94233 0.94056 1.04237 1.70264 1.01176 1.36206 1.37370 0.85278 0.78652 0.78934 0.77157 1.19412 1.19970 1.18114 1.21326 0.95981 1.25452 0.86424 1.19711 0.87603 0.98881 0.97893 0.92624 0.90507 0.92473 0.92277 0.86862 0.88488 0.89984 0.77511 0.92427 0.93100 0.93154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.17 71.98 0.66 -2.25 16 2 C -0.09 -2.54 2.75 -10.58 -0.03 -2.57 16 3 H 0.06 1.83 8.12 -2.39 -0.02 1.81 16 4 C -0.12 -2.86 5.22 30.73 0.16 -2.70 16 5 C 0.10 2.96 7.00 86.46 0.61 3.56 16 6 N -0.46 -19.82 3.14 -511.04 -1.60 -21.42 16 7 C 0.13 6.19 12.61 180.15 2.27 8.46 16 8 N -0.52 -31.23 9.56 -192.50 -1.84 -33.07 16 9 C 0.14 8.50 6.67 39.19 0.26 8.76 16 10 C -0.49 -29.89 9.23 23.36 0.22 -29.68 16 11 H 0.07 4.19 7.85 -2.91 -0.02 4.17 16 12 C 0.02 1.21 5.49 85.17 0.47 1.68 16 13 N -0.82 -51.09 11.97 21.79 0.26 -50.83 16 14 Si 0.98 44.10 29.56 68.60 2.03 46.13 16 15 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 17 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 18 C -0.18 -9.05 6.69 41.83 0.28 -8.77 16 19 C 0.00 -0.09 5.46 29.99 0.16 0.07 16 20 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 21 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 22 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 23 H 0.06 1.59 8.12 -2.39 -0.02 1.57 16 24 H 0.11 1.88 8.12 -2.39 -0.02 1.86 16 25 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.21 7.91 8.06 -2.91 -0.02 7.89 16 28 H 0.27 15.21 8.30 -92.71 -0.77 14.44 16 29 H 0.05 2.01 8.11 -2.39 -0.02 1.99 16 30 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -76.48 251.36 5.01 -71.47 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 1.11 Total: 11.15 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: 5.06 Total: -23.42 kcal Atomic # 7 Polarization: -102.14 SS G_CDS: -3.18 Total: -105.32 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -76.48 5.01 -71.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261052562.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.349 kcal (2) G-P(sol) polarization free energy of solvation -76.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds