Wall clock time and date at job start Mon Mar 30 2020 02:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08989 * 109.59958 * 2 1 4 4 C 1.53262 * 109.71679 * 239.61765 * 2 1 3 5 5 C 1.53126 * 109.70606 * 189.34249 * 4 2 1 6 6 C 1.53514 * 109.23150 * 69.67628 * 5 4 2 7 7 C 1.50609 * 108.06853 * 311.56212 * 6 5 4 8 8 C 1.38245 * 128.69890 * 195.63872 * 7 6 5 9 9 C 1.41234 * 126.56070 * 359.88902 * 8 7 6 10 10 H 1.07997 * 120.00052 * 0.02562 * 9 8 7 11 11 C 1.39709 * 119.99583 * 180.02562 * 9 8 7 12 12 N 1.31016 * 120.00233 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99749 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47091 * 59.99746 * 13 11 9 15 15 H 1.48500 * 109.47232 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47289 * 299.99694 * 13 11 9 17 17 N 1.36258 * 106.87325 * 179.88283 * 8 7 6 18 18 C 1.30424 * 109.19153 * 0.02562 * 17 8 7 19 19 N 1.35462 * 109.49817 * 0.03926 * 18 17 8 20 20 H 1.09003 * 109.47145 * 299.70112 * 1 2 3 21 21 H 1.09000 * 109.47088 * 59.69678 * 1 2 3 22 22 H 1.08993 * 109.47797 * 179.69756 * 1 2 3 23 23 H 1.08996 * 109.43220 * 309.42116 * 4 2 1 24 24 H 1.09000 * 109.42760 * 69.31932 * 4 2 1 25 25 H 1.09006 * 109.51443 * 189.59964 * 5 4 2 26 26 H 1.08996 * 109.51616 * 309.74958 * 5 4 2 27 27 H 1.09001 * 109.74474 * 71.20263 * 6 5 4 28 28 H 1.08993 * 109.74506 * 191.87236 * 6 5 4 29 29 H 0.97002 * 119.99889 * 180.02562 * 12 11 9 30 30 H 1.07996 * 125.24744 * 180.02562 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8956 1.0267 0.0000 4 6 2.0470 -0.7297 -1.2446 5 6 3.5603 -0.9347 -1.1316 6 6 3.8501 -1.9666 -0.0326 7 6 3.0590 -1.5817 1.1899 8 6 3.2123 -2.0201 2.4920 9 6 4.1683 -2.9483 2.9602 10 1 4.8746 -3.3894 2.2725 11 6 4.2003 -3.2958 4.3130 12 7 3.3438 -2.7602 5.1474 13 14 5.4643 -4.5239 4.9321 14 1 6.8301 -4.0073 4.6619 15 1 5.2898 -4.7196 6.3938 16 1 5.2783 -5.8207 4.2330 17 7 2.2645 -1.3853 3.2372 18 6 1.5634 -0.6037 2.4635 19 7 2.0213 -0.6969 1.1921 20 1 -0.3633 0.5092 0.8927 21 1 -0.3633 0.5185 -0.8873 22 1 -0.3634 -1.0275 -0.0054 23 1 1.5549 -1.6987 -1.3275 24 1 1.8276 -0.1346 -2.1311 25 1 3.9508 -1.2966 -2.0828 26 1 4.0380 0.0115 -0.8775 27 1 3.5478 -2.9582 -0.3695 28 1 4.9145 -1.9660 0.2017 29 1 3.3664 -3.0012 6.0867 30 1 0.7440 0.0213 2.7867 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261057031.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:04 Heat of formation + Delta-G solvation = 41.645932 kcal Electronic energy + Delta-G solvation = -13517.142415 eV Core-core repulsion = 11312.569828 eV Total energy + Delta-G solvation = -2204.572587 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.34873 -36.03881 -33.26615 -32.32604 -29.44792 -28.27455 -26.22598 -24.36104 -21.97810 -20.97192 -19.60610 -17.87939 -16.69045 -15.35577 -14.78747 -14.35942 -13.90319 -13.39718 -12.98780 -12.85703 -12.46238 -12.21336 -11.98187 -11.79041 -11.08488 -10.96126 -10.82285 -10.50951 -10.35393 -10.16087 -10.04621 -9.74510 -9.04209 -7.88925 -7.76746 -6.76318 -6.10255 -3.86680 3.21706 3.30458 3.33285 3.64445 4.10529 4.31539 4.74488 4.96267 5.08947 5.27079 5.52541 5.67619 5.70532 5.78453 5.90209 6.01339 6.07978 6.09978 6.24079 6.27199 6.44472 6.57828 6.75469 6.85972 7.32997 7.62925 7.93097 8.14687 8.55532 8.91082 9.24860 9.44956 10.14843 10.84102 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.049999 B = 0.010183 C = 0.008680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.880297 B = 2749.016694 C = 3225.080801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.141 3.859 3 H 0.067 0.933 4 C -0.120 4.120 5 C -0.119 4.119 6 C -0.006 4.006 7 C -0.196 4.196 8 C 0.203 3.797 9 C -0.452 4.452 10 H 0.073 0.927 11 C 0.075 3.925 12 N -0.775 5.775 13 Si 0.898 3.102 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.271 1.271 17 N -0.462 5.462 18 C 0.140 3.860 19 N -0.464 5.464 20 H 0.060 0.940 21 H 0.063 0.937 22 H 0.061 0.939 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.265 0.735 30 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.629 3.914 -9.798 10.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.036 3.964 3 H 0.085 0.915 4 C -0.158 4.158 5 C -0.157 4.157 6 C -0.044 4.044 7 C -0.304 4.304 8 C 0.080 3.920 9 C -0.487 4.487 10 H 0.091 0.909 11 C -0.143 4.143 12 N -0.401 5.401 13 Si 0.724 3.276 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.196 1.196 17 N -0.184 5.184 18 C -0.140 4.140 19 N -0.157 5.157 20 H 0.079 0.921 21 H 0.082 0.918 22 H 0.080 0.920 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -2.875 3.890 -8.811 10.052 hybrid contribution 0.525 -0.322 -0.484 0.784 sum -2.350 3.568 -9.296 10.230 Atomic orbital electron populations 1.22094 0.94676 1.02733 1.02000 1.21105 0.94022 0.95677 0.85565 0.91467 1.21808 0.97192 1.00803 0.96012 1.21628 0.94929 1.00233 0.98937 1.19530 0.98232 0.96284 0.90365 1.20697 1.02402 1.09848 0.97424 1.18019 0.93368 0.94595 0.86045 1.18389 1.14577 1.22608 0.93159 0.90929 1.25756 0.95520 0.95910 0.97074 1.70098 1.30815 1.35908 1.03323 0.86575 0.81746 0.81529 0.77759 1.19572 1.20843 1.19567 1.71421 1.07564 1.09596 1.29852 1.24689 1.03605 1.05367 0.80341 1.44796 1.28102 1.36088 1.06696 0.92062 0.91762 0.91972 0.91392 0.91509 0.92347 0.92370 0.93259 0.91959 0.92458 0.81448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.03 37.16 0.34 -1.78 16 2 C 0.14 2.30 3.63 -67.76 -0.25 2.06 16 3 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 4 C -0.12 -1.77 5.22 -26.53 -0.14 -1.91 16 5 C -0.12 -1.91 5.97 -26.40 -0.16 -2.06 16 6 C -0.01 -0.12 6.15 -27.66 -0.17 -0.29 16 7 C -0.20 -4.86 6.69 -80.62 -0.54 -5.40 16 8 C 0.20 5.91 6.68 -84.76 -0.57 5.35 16 9 C -0.45 -13.23 9.23 -37.89 -0.35 -13.58 16 10 H 0.07 2.01 7.84 -52.49 -0.41 1.59 16 11 C 0.08 2.13 5.49 -17.35 -0.10 2.04 16 12 N -0.77 -23.03 11.95 55.54 0.66 -22.37 16 13 Si 0.90 20.75 29.56 -169.99 -5.02 15.72 16 14 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 17 N -0.46 -13.43 9.54 -12.20 -0.12 -13.55 16 18 C 0.14 3.36 11.85 -90.05 -1.07 2.30 16 19 N -0.46 -10.19 2.99 -105.82 -0.32 -10.50 16 20 H 0.06 0.80 7.50 -51.93 -0.39 0.41 16 21 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.26 7.27 8.30 -40.82 -0.34 6.93 16 30 H 0.17 3.35 7.63 -52.49 -0.40 2.95 16 LS Contribution 249.78 15.07 3.76 3.76 Total: -1.00 -33.00 249.78 -8.16 -41.16 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -4.14 Total: -0.95 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -2.99 Total: -13.28 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 0.23 Total: -46.42 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -33.00 -8.16 -41.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261057031.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.807 kcal (2) G-P(sol) polarization free energy of solvation -33.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds