Wall clock time and date at job start Mon Mar 30 2020 02:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08989 * 109.59958 * 2 1 4 4 C 1.53262 * 109.71679 * 239.61765 * 2 1 3 5 5 C 1.53126 * 109.70606 * 189.34249 * 4 2 1 6 6 C 1.53514 * 109.23150 * 69.67628 * 5 4 2 7 7 C 1.50609 * 108.06853 * 311.56212 * 6 5 4 8 8 C 1.38245 * 128.69890 * 195.63872 * 7 6 5 9 9 C 1.41234 * 126.56070 * 359.88902 * 8 7 6 10 10 H 1.07997 * 120.00052 * 0.02562 * 9 8 7 11 11 C 1.39709 * 119.99583 * 180.02562 * 9 8 7 12 12 N 1.31016 * 120.00233 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99749 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47091 * 59.99746 * 13 11 9 15 15 H 1.48500 * 109.47232 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47289 * 299.99694 * 13 11 9 17 17 N 1.36258 * 106.87325 * 179.88283 * 8 7 6 18 18 C 1.30424 * 109.19153 * 0.02562 * 17 8 7 19 19 N 1.35462 * 109.49817 * 0.03926 * 18 17 8 20 20 H 1.09003 * 109.47145 * 299.70112 * 1 2 3 21 21 H 1.09000 * 109.47088 * 59.69678 * 1 2 3 22 22 H 1.08993 * 109.47797 * 179.69756 * 1 2 3 23 23 H 1.08996 * 109.43220 * 309.42116 * 4 2 1 24 24 H 1.09000 * 109.42760 * 69.31932 * 4 2 1 25 25 H 1.09006 * 109.51443 * 189.59964 * 5 4 2 26 26 H 1.08996 * 109.51616 * 309.74958 * 5 4 2 27 27 H 1.09001 * 109.74474 * 71.20263 * 6 5 4 28 28 H 1.08993 * 109.74506 * 191.87236 * 6 5 4 29 29 H 0.97002 * 119.99889 * 180.02562 * 12 11 9 30 30 H 1.07996 * 125.24744 * 180.02562 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8956 1.0267 0.0000 4 6 2.0470 -0.7297 -1.2446 5 6 3.5603 -0.9347 -1.1316 6 6 3.8501 -1.9666 -0.0326 7 6 3.0590 -1.5817 1.1899 8 6 3.2123 -2.0201 2.4920 9 6 4.1683 -2.9483 2.9602 10 1 4.8746 -3.3894 2.2725 11 6 4.2003 -3.2958 4.3130 12 7 3.3438 -2.7602 5.1474 13 14 5.4643 -4.5239 4.9321 14 1 6.8301 -4.0073 4.6619 15 1 5.2898 -4.7196 6.3938 16 1 5.2783 -5.8207 4.2330 17 7 2.2645 -1.3853 3.2372 18 6 1.5634 -0.6037 2.4635 19 7 2.0213 -0.6969 1.1921 20 1 -0.3633 0.5092 0.8927 21 1 -0.3633 0.5185 -0.8873 22 1 -0.3634 -1.0275 -0.0054 23 1 1.5549 -1.6987 -1.3275 24 1 1.8276 -0.1346 -2.1311 25 1 3.9508 -1.2966 -2.0828 26 1 4.0380 0.0115 -0.8775 27 1 3.5478 -2.9582 -0.3695 28 1 4.9145 -1.9660 0.2017 29 1 3.3664 -3.0012 6.0867 30 1 0.7440 0.0213 2.7867 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261057031.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:03 Heat of formation + Delta-G solvation = 21.546339 kcal Electronic energy + Delta-G solvation = -13518.013999 eV Core-core repulsion = 11312.569828 eV Total energy + Delta-G solvation = -2205.444171 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.15553 -37.54649 -35.17095 -33.95121 -31.18976 -30.09135 -27.68895 -26.25683 -23.42420 -22.49844 -21.55922 -19.47680 -18.57060 -17.20931 -16.58877 -15.88462 -15.28264 -14.94378 -14.60093 -14.50615 -14.10587 -13.79864 -13.30357 -13.16403 -12.86912 -12.67529 -12.32487 -12.20804 -11.92987 -11.84183 -11.48610 -11.40317 -11.03336 -9.87818 -9.67272 -8.77875 -8.16079 -5.98798 1.38390 1.41060 1.53605 1.78664 2.35531 2.53792 2.72153 3.73983 3.78196 3.86181 4.01661 4.24990 4.31775 4.40987 4.47545 4.68517 4.81717 4.89840 4.94935 5.06769 5.10214 5.13816 5.24587 5.39532 5.43282 5.61277 5.99495 6.19032 6.46698 7.01974 7.22642 7.39945 8.18477 8.80486 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.049999 B = 0.010183 C = 0.008680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.880297 B = 2749.016694 C = 3225.080801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.125 3.875 3 H 0.085 0.915 4 C -0.117 4.117 5 C -0.112 4.112 6 C -0.012 4.012 7 C -0.183 4.183 8 C 0.141 3.859 9 C -0.489 4.489 10 H 0.073 0.927 11 C 0.020 3.980 12 N -0.822 5.822 13 Si 0.978 3.022 14 H -0.262 1.262 15 H -0.276 1.276 16 H -0.263 1.263 17 N -0.519 5.519 18 C 0.132 3.868 19 N -0.455 5.455 20 H 0.061 0.939 21 H 0.104 0.896 22 H 0.046 0.954 23 H 0.059 0.941 24 H 0.113 0.887 25 H 0.092 0.908 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.266 0.734 30 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.833 4.666 -12.288 13.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.023 3.977 3 H 0.103 0.897 4 C -0.155 4.155 5 C -0.150 4.150 6 C -0.051 4.051 7 C -0.293 4.293 8 C 0.017 3.983 9 C -0.525 4.525 10 H 0.091 0.909 11 C -0.192 4.192 12 N -0.450 5.450 13 Si 0.800 3.200 14 H -0.187 1.187 15 H -0.201 1.201 16 H -0.187 1.187 17 N -0.242 5.242 18 C -0.148 4.148 19 N -0.145 5.145 20 H 0.081 0.919 21 H 0.122 0.878 22 H 0.065 0.935 23 H 0.078 0.922 24 H 0.132 0.868 25 H 0.111 0.889 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -3.104 4.675 -11.355 12.666 hybrid contribution 0.504 -0.435 0.115 0.675 sum -2.600 4.240 -11.240 12.292 Atomic orbital electron populations 1.22063 0.92195 1.02423 1.04087 1.21693 0.96125 0.96063 0.83805 0.89696 1.21867 0.95773 1.01067 0.96745 1.21605 0.96280 0.98603 0.98520 1.19682 0.97027 0.98037 0.90328 1.21325 1.02190 1.08234 0.97552 1.18557 0.94836 0.96586 0.88308 1.18730 1.15582 1.23974 0.94189 0.90920 1.26684 0.97730 0.97912 0.96909 1.70256 1.33172 1.38095 1.03514 0.85352 0.78739 0.78695 0.77237 1.18703 1.20065 1.18709 1.71258 1.09004 1.11571 1.32371 1.25182 1.03775 1.04891 0.80997 1.45127 1.26616 1.34825 1.07976 0.91947 0.87754 0.93465 0.92232 0.86850 0.88915 0.92413 0.93022 0.92794 0.92461 0.78114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.03 71.98 0.65 -2.82 16 2 C 0.13 3.66 3.63 45.07 0.16 3.82 16 3 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 4 C -0.12 -2.91 5.22 30.72 0.16 -2.75 16 5 C -0.11 -3.18 5.97 30.81 0.18 -3.00 16 6 C -0.01 -0.49 6.15 29.99 0.18 -0.30 16 7 C -0.18 -9.12 6.69 41.83 0.28 -8.84 16 8 C 0.14 8.54 6.68 39.19 0.26 8.80 16 9 C -0.49 -29.92 9.23 23.36 0.22 -29.70 16 10 H 0.07 4.20 7.84 -2.91 -0.02 4.18 16 11 C 0.02 1.20 5.49 85.17 0.47 1.67 16 12 N -0.82 -51.20 11.95 21.79 0.26 -50.94 16 13 Si 0.98 44.13 29.56 68.60 2.03 46.16 16 14 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 15 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 16 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 17 N -0.52 -31.34 9.54 -192.50 -1.84 -33.18 16 18 C 0.13 6.39 11.85 180.15 2.14 8.52 16 19 N -0.46 -19.53 2.99 -488.72 -1.46 -20.99 16 20 H 0.06 1.43 7.50 -2.39 -0.02 1.41 16 21 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 22 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.06 1.62 8.10 -2.39 -0.02 1.60 16 24 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 26 H 0.06 1.66 8.12 -2.39 -0.02 1.64 16 27 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.27 15.28 8.30 -92.71 -0.77 14.51 16 30 H 0.20 7.91 7.63 -2.91 -0.02 7.89 16 Total: -1.00 -76.53 249.78 4.81 -71.72 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 1.11 Total: 11.83 kcal Atomic # 6 Polarization: -29.30 SS G_CDS: 4.70 Total: -24.60 kcal Atomic # 7 Polarization: -102.08 SS G_CDS: -3.04 Total: -105.11 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -76.53 4.81 -71.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261057031.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.266 kcal (2) G-P(sol) polarization free energy of solvation -76.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds