Wall clock time and date at job start Mon Mar 30 2020 02:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.72079 * 2 1 4 4 C 1.53262 * 109.59483 * 120.38273 * 2 1 3 5 5 C 1.53124 * 109.67135 * 170.55707 * 4 2 1 6 6 C 1.53515 * 109.23227 * 290.35452 * 5 4 2 7 7 C 1.50618 * 108.06685 * 48.43986 * 6 5 4 8 8 C 1.38241 * 128.69218 * 164.36323 * 7 6 5 9 9 C 1.41232 * 126.56465 * 0.12887 * 8 7 6 10 10 H 1.07994 * 120.00304 * 354.31210 * 9 8 7 11 11 C 1.39721 * 119.99780 * 174.30716 * 9 8 7 12 12 N 1.31022 * 119.99575 * 6.01978 * 11 9 8 13 13 Si 1.86793 * 119.99999 * 186.01294 * 11 9 8 14 14 H 1.48508 * 109.47038 * 94.98414 * 13 11 9 15 15 H 1.48497 * 109.47294 * 214.98560 * 13 11 9 16 16 H 1.48496 * 109.47407 * 334.98788 * 13 11 9 17 17 N 1.36264 * 106.86888 * 180.10873 * 8 7 6 18 18 C 1.30420 * 109.18967 * 359.97438 * 17 8 7 19 19 N 1.35461 * 109.50285 * 359.95570 * 18 17 8 20 20 H 1.09000 * 109.46955 * 299.62121 * 1 2 3 21 21 H 1.09003 * 109.46950 * 59.61963 * 1 2 3 22 22 H 1.09001 * 109.47431 * 179.62225 * 1 2 3 23 23 H 1.08999 * 109.43152 * 50.50563 * 4 2 1 24 24 H 1.08999 * 109.42700 * 290.60212 * 4 2 1 25 25 H 1.09003 * 109.51314 * 50.27704 * 5 4 2 26 26 H 1.08997 * 109.51184 * 170.43054 * 5 4 2 27 27 H 1.08995 * 109.74532 * 168.08270 * 6 5 4 28 28 H 1.08997 * 109.74529 * 288.80054 * 6 5 4 29 29 H 0.96997 * 119.99133 * 179.97438 * 12 11 9 30 30 H 1.07997 * 125.24509 * 179.97438 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8977 1.0260 0.0000 4 6 2.0439 -0.7303 1.2456 5 6 3.5568 -0.9387 1.1333 6 6 3.8448 -1.9712 0.0344 7 6 3.0553 -1.5844 -1.1885 8 6 3.2083 -2.0232 -2.4905 9 6 4.1623 -2.9538 -2.9580 10 1 4.9245 -3.3275 -2.2904 11 6 4.1198 -3.3911 -4.2844 12 7 3.2717 -2.8519 -5.1250 13 14 5.2723 -4.7441 -4.8591 14 1 4.5776 -6.0541 -4.7766 15 1 5.6770 -4.4860 -6.2643 16 1 6.4783 -4.7682 -3.9930 17 7 2.2623 -1.3863 -3.2362 18 6 1.5625 -0.6032 -2.4629 19 7 2.0194 -0.6975 -1.1912 20 1 -0.3633 0.5079 0.8934 21 1 -0.3633 0.5197 -0.8866 22 1 -0.3634 -1.0276 -0.0068 23 1 1.5497 -1.6982 1.3282 24 1 1.8248 -0.1343 2.1315 25 1 4.0367 0.0065 0.8795 26 1 3.9458 -1.3015 2.0847 27 1 4.9093 -1.9725 -0.1998 28 1 3.5401 -2.9621 0.3711 29 1 3.2426 -3.1552 -6.0459 30 1 0.7447 0.0236 -2.7865 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261057033.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:05 Heat of formation + Delta-G solvation = 41.551035 kcal Electronic energy + Delta-G solvation = -13518.855570 eV Core-core repulsion = 11314.278868 eV Total energy + Delta-G solvation = -2204.576702 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.35845 -36.04488 -33.26792 -32.32864 -29.45454 -28.27610 -26.22440 -24.36312 -21.98213 -20.97593 -19.60912 -17.88204 -16.69352 -15.36679 -14.78071 -14.36390 -13.90343 -13.39956 -12.99201 -12.86071 -12.46159 -12.22237 -11.98546 -11.78355 -11.11347 -10.94679 -10.83748 -10.51153 -10.34399 -10.15711 -10.05226 -9.72940 -9.03582 -7.89476 -7.77046 -6.76324 -6.11180 -3.86733 3.19529 3.31291 3.34987 3.64113 4.10632 4.31530 4.74270 4.96032 5.08882 5.26911 5.52434 5.67449 5.70408 5.78263 5.88979 6.01349 6.07921 6.09454 6.24055 6.27045 6.44476 6.57541 6.75306 6.85914 7.33342 7.62787 7.92810 8.14305 8.56063 8.91057 9.24705 9.44852 10.14375 10.83574 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.049537 B = 0.010206 C = 0.008713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.094358 B = 2742.937878 C = 3212.666840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.141 3.859 3 H 0.068 0.932 4 C -0.120 4.120 5 C -0.120 4.120 6 C -0.006 4.006 7 C -0.196 4.196 8 C 0.203 3.797 9 C -0.452 4.452 10 H 0.073 0.927 11 C 0.075 3.925 12 N -0.774 5.774 13 Si 0.898 3.102 14 H -0.276 1.276 15 H -0.282 1.282 16 H -0.267 1.267 17 N -0.462 5.462 18 C 0.140 3.860 19 N -0.464 5.464 20 H 0.063 0.937 21 H 0.060 0.940 22 H 0.061 0.939 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.264 0.736 30 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.656 3.897 9.849 10.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.036 3.964 3 H 0.085 0.915 4 C -0.158 4.158 5 C -0.157 4.157 6 C -0.044 4.044 7 C -0.303 4.303 8 C 0.079 3.921 9 C -0.488 4.488 10 H 0.091 0.909 11 C -0.143 4.143 12 N -0.401 5.401 13 Si 0.724 3.276 14 H -0.201 1.201 15 H -0.208 1.208 16 H -0.191 1.191 17 N -0.185 5.185 18 C -0.140 4.140 19 N -0.157 5.157 20 H 0.082 0.918 21 H 0.079 0.921 22 H 0.080 0.920 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -2.902 3.870 8.868 10.102 hybrid contribution 0.445 -0.396 0.498 0.776 sum -2.457 3.474 9.366 10.287 Atomic orbital electron populations 1.22097 0.94680 1.02749 1.01982 1.21087 0.94040 0.95667 0.85583 0.91451 1.21813 0.97202 1.00803 0.96010 1.21630 0.94943 1.00222 0.98947 1.19534 0.98218 0.96305 0.90354 1.20710 1.02393 1.09880 0.97317 1.18030 0.93480 0.94503 0.86051 1.18431 1.12362 1.22553 0.95413 0.90855 1.25760 0.95287 0.96434 0.96771 1.70120 1.30677 1.35592 1.03721 0.86498 0.81132 0.81812 0.78207 1.20148 1.20766 1.19091 1.71421 1.07815 1.09382 1.29849 1.24685 1.03649 1.05316 0.80341 1.44770 1.28182 1.35998 1.06717 0.91763 0.92080 0.91958 0.91386 0.91500 0.92377 0.92343 0.91976 0.93202 0.92537 0.81443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.01 37.15 0.33 -1.78 16 2 C 0.14 2.30 3.63 -67.82 -0.25 2.05 16 3 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 4 C -0.12 -1.77 5.22 -26.53 -0.14 -1.91 16 5 C -0.12 -1.91 5.97 -26.40 -0.16 -2.06 16 6 C -0.01 -0.12 6.15 -27.66 -0.17 -0.29 16 7 C -0.20 -4.84 6.69 -80.61 -0.54 -5.38 16 8 C 0.20 5.90 6.67 -84.76 -0.57 5.33 16 9 C -0.45 -13.24 9.23 -37.89 -0.35 -13.59 16 10 H 0.07 2.03 7.85 -52.49 -0.41 1.62 16 11 C 0.08 2.13 5.49 -17.34 -0.10 2.04 16 12 N -0.77 -23.02 11.98 55.54 0.67 -22.36 16 13 Si 0.90 20.75 29.56 -169.99 -5.03 15.73 16 14 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 17 N -0.46 -13.44 9.56 -12.20 -0.12 -13.56 16 18 C 0.14 3.36 11.85 -90.06 -1.07 2.30 16 19 N -0.46 -10.17 2.98 -105.90 -0.32 -10.49 16 20 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 21 H 0.06 0.80 7.53 -51.93 -0.39 0.41 16 22 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 23 H 0.07 1.05 8.09 -51.93 -0.42 0.63 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.94 8.12 -51.93 -0.42 0.51 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.26 7.22 8.30 -40.82 -0.34 6.89 16 30 H 0.17 3.35 7.65 -52.49 -0.40 2.95 16 LS Contribution 249.85 15.07 3.77 3.77 Total: -1.00 -33.02 249.85 -8.16 -41.19 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -4.14 Total: -0.99 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -2.99 Total: -13.28 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: 0.23 Total: -46.40 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.73 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -33.02 -8.16 -41.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261057033.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.738 kcal (2) G-P(sol) polarization free energy of solvation -33.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds