Wall clock time and date at job start Mon Mar 30 2020 02:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.72079 * 2 1 4 4 C 1.53262 * 109.59483 * 120.38273 * 2 1 3 5 5 C 1.53124 * 109.67135 * 170.55707 * 4 2 1 6 6 C 1.53515 * 109.23227 * 290.35452 * 5 4 2 7 7 C 1.50618 * 108.06685 * 48.43986 * 6 5 4 8 8 C 1.38241 * 128.69218 * 164.36323 * 7 6 5 9 9 C 1.41232 * 126.56465 * 0.12887 * 8 7 6 10 10 H 1.07994 * 120.00304 * 354.31210 * 9 8 7 11 11 C 1.39721 * 119.99780 * 174.30716 * 9 8 7 12 12 N 1.31022 * 119.99575 * 6.01978 * 11 9 8 13 13 Si 1.86793 * 119.99999 * 186.01294 * 11 9 8 14 14 H 1.48508 * 109.47038 * 94.98414 * 13 11 9 15 15 H 1.48497 * 109.47294 * 214.98560 * 13 11 9 16 16 H 1.48496 * 109.47407 * 334.98788 * 13 11 9 17 17 N 1.36264 * 106.86888 * 180.10873 * 8 7 6 18 18 C 1.30420 * 109.18967 * 359.97438 * 17 8 7 19 19 N 1.35461 * 109.50285 * 359.95570 * 18 17 8 20 20 H 1.09000 * 109.46955 * 299.62121 * 1 2 3 21 21 H 1.09003 * 109.46950 * 59.61963 * 1 2 3 22 22 H 1.09001 * 109.47431 * 179.62225 * 1 2 3 23 23 H 1.08999 * 109.43152 * 50.50563 * 4 2 1 24 24 H 1.08999 * 109.42700 * 290.60212 * 4 2 1 25 25 H 1.09003 * 109.51314 * 50.27704 * 5 4 2 26 26 H 1.08997 * 109.51184 * 170.43054 * 5 4 2 27 27 H 1.08995 * 109.74532 * 168.08270 * 6 5 4 28 28 H 1.08997 * 109.74529 * 288.80054 * 6 5 4 29 29 H 0.96997 * 119.99133 * 179.97438 * 12 11 9 30 30 H 1.07997 * 125.24509 * 179.97438 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8977 1.0260 0.0000 4 6 2.0439 -0.7303 1.2456 5 6 3.5568 -0.9387 1.1333 6 6 3.8448 -1.9712 0.0344 7 6 3.0553 -1.5844 -1.1885 8 6 3.2083 -2.0232 -2.4905 9 6 4.1623 -2.9538 -2.9580 10 1 4.9245 -3.3275 -2.2904 11 6 4.1198 -3.3911 -4.2844 12 7 3.2717 -2.8519 -5.1250 13 14 5.2723 -4.7441 -4.8591 14 1 4.5776 -6.0541 -4.7766 15 1 5.6770 -4.4860 -6.2643 16 1 6.4783 -4.7682 -3.9930 17 7 2.2623 -1.3863 -3.2362 18 6 1.5625 -0.6032 -2.4629 19 7 2.0194 -0.6975 -1.1912 20 1 -0.3633 0.5079 0.8934 21 1 -0.3633 0.5197 -0.8866 22 1 -0.3634 -1.0276 -0.0068 23 1 1.5497 -1.6982 1.3282 24 1 1.8248 -0.1343 2.1315 25 1 4.0367 0.0065 0.8795 26 1 3.9458 -1.3015 2.0847 27 1 4.9093 -1.9725 -0.1998 28 1 3.5401 -2.9621 0.3711 29 1 3.2426 -3.1552 -6.0459 30 1 0.7447 0.0236 -2.7865 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261057033.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:05 Heat of formation + Delta-G solvation = 21.428937 kcal Electronic energy + Delta-G solvation = -13519.728130 eV Core-core repulsion = 11314.278868 eV Total energy + Delta-G solvation = -2205.449262 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.16378 -37.55204 -35.17214 -33.95478 -31.19482 -30.09316 -27.68660 -26.25850 -23.42765 -22.50120 -21.56184 -19.47820 -18.57426 -17.21813 -16.58437 -15.88804 -15.28245 -14.94798 -14.60980 -14.50596 -14.10850 -13.79883 -13.29766 -13.16541 -12.90851 -12.66799 -12.34941 -12.19815 -11.89545 -11.83898 -11.48366 -11.40147 -11.03640 -9.88306 -9.67416 -8.77777 -8.17091 -5.98868 1.36174 1.41106 1.55640 1.78285 2.35440 2.53836 2.71865 3.73456 3.77646 3.85948 4.01570 4.24863 4.31524 4.40868 4.47758 4.68528 4.81524 4.89859 4.94973 5.07052 5.10140 5.13734 5.24556 5.39626 5.43631 5.61175 5.99276 6.18834 6.47033 7.02001 7.22466 7.39821 8.18098 8.80093 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.049537 B = 0.010206 C = 0.008713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.094358 B = 2742.937878 C = 3212.666840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.125 3.875 3 H 0.085 0.915 4 C -0.117 4.117 5 C -0.113 4.113 6 C -0.012 4.012 7 C -0.182 4.182 8 C 0.141 3.859 9 C -0.489 4.489 10 H 0.072 0.928 11 C 0.021 3.979 12 N -0.822 5.822 13 Si 0.978 3.022 14 H -0.269 1.269 15 H -0.275 1.275 16 H -0.257 1.257 17 N -0.519 5.519 18 C 0.132 3.868 19 N -0.455 5.455 20 H 0.104 0.896 21 H 0.062 0.938 22 H 0.046 0.954 23 H 0.059 0.941 24 H 0.113 0.887 25 H 0.057 0.943 26 H 0.092 0.908 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.266 0.734 30 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.915 4.600 12.361 13.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.023 3.977 3 H 0.103 0.897 4 C -0.155 4.155 5 C -0.150 4.150 6 C -0.051 4.051 7 C -0.292 4.292 8 C 0.017 3.983 9 C -0.524 4.524 10 H 0.091 0.909 11 C -0.192 4.192 12 N -0.450 5.450 13 Si 0.800 3.200 14 H -0.195 1.195 15 H -0.200 1.200 16 H -0.181 1.181 17 N -0.242 5.242 18 C -0.148 4.148 19 N -0.145 5.145 20 H 0.122 0.878 21 H 0.081 0.919 22 H 0.065 0.935 23 H 0.078 0.922 24 H 0.132 0.868 25 H 0.076 0.924 26 H 0.111 0.889 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -3.184 4.607 11.434 12.732 hybrid contribution 0.447 -0.485 -0.114 0.670 sum -2.738 4.122 11.320 12.354 Atomic orbital electron populations 1.22066 0.92214 1.02381 1.04110 1.21676 0.96132 0.96062 0.83831 0.89660 1.21872 0.95785 1.01067 0.96740 1.21607 0.96291 0.98597 0.98524 1.19686 0.97008 0.98058 0.90318 1.21334 1.02167 1.08260 0.97457 1.18563 0.94968 0.96479 0.88306 1.18756 1.13273 1.23991 0.96429 0.90937 1.26687 0.97094 0.98911 0.96526 1.70272 1.33071 1.37675 1.04026 0.85276 0.78804 0.78140 0.77784 1.19477 1.19996 1.18106 1.71258 1.09267 1.11346 1.32375 1.25178 1.03821 1.04825 0.81001 1.45100 1.26694 1.34736 1.07989 0.87759 0.91933 0.93504 0.92232 0.86837 0.92405 0.88918 0.92824 0.92974 0.92471 0.78106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.01 71.98 0.65 -2.82 16 2 C 0.13 3.65 3.63 45.09 0.16 3.81 16 3 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 4 C -0.12 -2.91 5.22 30.72 0.16 -2.75 16 5 C -0.11 -3.18 5.97 30.81 0.18 -3.00 16 6 C -0.01 -0.48 6.15 30.00 0.18 -0.30 16 7 C -0.18 -9.07 6.69 41.83 0.28 -8.79 16 8 C 0.14 8.52 6.67 39.19 0.26 8.78 16 9 C -0.49 -29.90 9.23 23.36 0.22 -29.69 16 10 H 0.07 4.20 7.85 -2.91 -0.02 4.18 16 11 C 0.02 1.21 5.49 85.17 0.47 1.67 16 12 N -0.82 -51.19 11.98 21.79 0.26 -50.93 16 13 Si 0.98 44.18 29.56 68.60 2.03 46.20 16 14 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 15 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 16 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 17 N -0.52 -31.35 9.56 -192.50 -1.84 -33.19 16 18 C 0.13 6.39 11.85 180.15 2.14 8.53 16 19 N -0.46 -19.50 2.98 -488.96 -1.46 -20.96 16 20 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 21 H 0.06 1.43 7.53 -2.39 -0.02 1.41 16 22 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.06 1.62 8.09 -2.39 -0.02 1.60 16 24 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.06 1.65 8.12 -2.39 -0.02 1.63 16 26 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.27 15.22 8.30 -92.71 -0.77 14.45 16 30 H 0.20 7.90 7.65 -2.91 -0.02 7.88 16 Total: -1.00 -76.57 249.85 4.80 -71.76 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 1.11 Total: 11.66 kcal Atomic # 6 Polarization: -29.25 SS G_CDS: 4.70 Total: -24.55 kcal Atomic # 7 Polarization: -102.04 SS G_CDS: -3.04 Total: -105.08 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -76.57 4.80 -71.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261057033.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.193 kcal (2) G-P(sol) polarization free energy of solvation -76.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds