Wall clock time and date at job start Mon Mar 30 2020 02:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34853 * 126.65448 * 2 1 4 4 N 1.34289 * 108.07661 * 180.02562 * 3 2 1 5 5 C 1.30098 * 109.20788 * 0.02922 * 4 3 2 6 6 N 1.35415 * 108.62795 * 359.94747 * 5 4 3 7 7 C 1.46473 * 124.82640 * 180.02562 * 6 5 4 8 8 C 1.53262 * 108.79837 * 17.10279 * 7 6 5 9 9 H 1.09003 * 109.46308 * 69.65121 * 8 7 6 10 10 C 1.50695 * 109.46713 * 189.64395 * 8 7 6 11 11 H 1.07996 * 120.00119 * 5.65925 * 10 8 7 12 12 C 1.37881 * 119.99955 * 185.67105 * 10 8 7 13 13 N 1.31518 * 119.99804 * 195.70835 * 12 10 8 14 14 Si 1.86799 * 120.00149 * 15.69853 * 12 10 8 15 15 H 1.48499 * 109.47262 * 180.02562 * 14 12 10 16 16 H 1.48505 * 109.46749 * 60.00595 * 14 12 10 17 17 H 1.48499 * 109.47339 * 300.00909 * 14 12 10 18 18 C 1.53157 * 109.49930 * 309.64894 * 8 7 6 19 19 C 1.51041 * 127.38574 * 179.89281 * 5 4 3 20 20 H 1.09003 * 109.47181 * 269.94858 * 1 2 3 21 21 H 1.08997 * 109.47324 * 29.95392 * 1 2 3 22 22 H 1.09004 * 109.46825 * 149.95148 * 1 2 3 23 23 H 1.08000 * 125.96429 * 0.05503 * 3 2 1 24 24 H 1.09002 * 109.58699 * 257.31001 * 7 6 5 25 25 H 1.08996 * 109.69815 * 136.96505 * 7 6 5 26 26 H 0.96991 * 120.00075 * 354.62591 * 13 12 10 27 27 H 1.08994 * 109.51133 * 189.40971 * 18 8 7 28 28 H 1.08997 * 109.50783 * 309.55139 * 18 8 7 29 29 H 1.09001 * 109.71463 * 315.72413 * 19 5 4 30 30 H 1.08994 * 109.72173 * 76.33079 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3120 1.0819 0.0000 4 7 3.5850 0.6540 -0.0006 5 6 3.5993 -0.6469 -0.0015 6 7 2.3209 -1.0935 -0.0005 7 6 1.9278 -2.5045 -0.0005 8 6 3.1315 -3.3526 0.4247 9 1 3.3415 -3.1814 1.4805 10 6 2.8215 -4.8107 0.2041 11 1 1.9017 -5.0997 -0.2824 12 6 3.7122 -5.7760 0.6237 13 7 3.6090 -7.0068 0.1720 14 14 5.0656 -5.3355 1.8335 15 1 5.8833 -6.5410 2.1221 16 1 4.4595 -4.8347 3.0934 17 1 5.9301 -4.2803 1.2466 18 6 4.3543 -2.9590 -0.4092 19 6 4.8094 -1.5507 -0.0047 20 1 -0.3634 -0.0009 1.0277 21 1 -0.3634 0.8904 -0.5131 22 1 -0.3633 -0.8896 -0.5146 23 1 1.9894 2.1125 0.0008 24 1 1.6114 -2.7956 -1.0022 25 1 1.1073 -2.6573 0.7005 26 1 2.8615 -7.2545 -0.3943 27 1 5.1619 -3.6683 -0.2283 28 1 4.0916 -2.9674 -1.4670 29 1 5.5422 -1.1816 -0.7223 30 1 5.2512 -1.5773 0.9913 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261066636.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:13 Heat of formation + Delta-G solvation = 39.278398 kcal Electronic energy + Delta-G solvation = -13530.178289 eV Core-core repulsion = 11325.503039 eV Total energy + Delta-G solvation = -2204.675251 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.83354 -36.35517 -33.18914 -32.63804 -30.51506 -29.29378 -25.99749 -24.76328 -22.43355 -20.99370 -20.06122 -18.12576 -17.74171 -15.90429 -15.37575 -14.44069 -13.87263 -13.56197 -13.47906 -13.38176 -12.89547 -12.66045 -12.26783 -12.14362 -11.87265 -11.10999 -10.95064 -10.61737 -10.41365 -10.00573 -9.70432 -9.49627 -9.01064 -8.96546 -8.42692 -7.72020 -6.63807 -4.28404 2.48804 3.28174 3.34682 3.36525 3.51284 3.54726 4.34943 4.87356 5.05824 5.11827 5.29813 5.44450 5.57213 5.63200 5.66080 5.86808 5.93119 5.93721 6.06989 6.13128 6.27168 6.50969 6.63062 6.89764 7.01167 7.19414 7.23440 7.61209 7.88344 8.18043 8.57610 8.68541 9.41476 10.77283 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.047061 B = 0.010666 C = 0.009343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.833156 B = 2624.620266 C = 2996.142863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.038 4.038 3 C -0.042 4.042 4 N -0.503 5.503 5 C 0.216 3.784 6 N -0.444 5.444 7 C 0.117 3.883 8 C 0.013 3.987 9 H 0.032 0.968 10 C -0.604 4.604 11 H 0.059 0.941 12 C 0.036 3.964 13 N -0.899 5.899 14 Si 1.044 2.956 15 H -0.284 1.284 16 H -0.282 1.282 17 H -0.270 1.270 18 C -0.129 4.129 19 C -0.040 4.040 20 H 0.067 0.933 21 H 0.076 0.924 22 H 0.062 0.938 23 H 0.162 0.838 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.269 0.731 27 H 0.080 0.920 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.741 10.250 0.287 10.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.155 4.155 3 C -0.191 4.191 4 N -0.222 5.222 5 C -0.047 4.047 6 N -0.125 5.125 7 C -0.004 4.004 8 C -0.006 4.006 9 H 0.050 0.950 10 C -0.642 4.642 11 H 0.077 0.923 12 C -0.171 4.171 13 N -0.532 5.532 14 Si 0.871 3.129 15 H -0.209 1.209 16 H -0.209 1.209 17 H -0.196 1.196 18 C -0.167 4.167 19 C -0.079 4.079 20 H 0.086 0.914 21 H 0.095 0.905 22 H 0.081 0.919 23 H 0.179 0.821 24 H 0.094 0.906 25 H 0.096 0.904 26 H 0.079 0.921 27 H 0.099 0.901 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.798 9.951 1.057 10.039 hybrid contribution -2.291 0.129 -0.829 2.440 sum -3.089 10.080 0.228 10.545 Atomic orbital electron populations 1.20123 0.87805 1.02780 1.02235 1.21102 0.94421 0.87356 1.12608 1.21993 0.88559 0.97925 1.10610 1.70002 1.22290 1.08519 1.21389 1.23321 0.86378 0.90346 1.04632 1.45640 1.06708 1.07699 1.52447 1.22202 1.00651 0.75309 1.02261 1.19321 0.89858 0.95928 0.95524 0.95034 1.21782 1.09075 0.88974 1.44328 0.92314 1.25783 1.00513 0.93508 0.97252 1.70864 1.29954 1.20311 1.32091 0.84056 0.76298 0.76073 0.76436 1.20929 1.20853 1.19574 1.22273 1.00522 0.93184 1.00712 1.20360 0.91362 0.93376 1.02780 0.91393 0.90523 0.91937 0.82104 0.90574 0.90376 0.92069 0.90121 0.92353 0.89898 0.90137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.21 36.01 0.37 -0.53 16 2 C -0.04 -0.66 6.98 -81.80 -0.57 -1.23 16 3 C -0.04 -0.74 11.80 -17.68 -0.21 -0.95 16 4 N -0.50 -10.10 11.24 -10.62 -0.12 -10.22 16 5 C 0.22 4.32 7.65 -155.24 -1.19 3.14 16 6 N -0.44 -8.57 3.13 -109.19 -0.34 -8.91 16 7 C 0.12 2.30 5.93 -3.92 -0.02 2.28 16 8 C 0.01 0.29 1.69 -91.56 -0.16 0.14 16 9 H 0.03 0.72 6.80 -51.93 -0.35 0.37 16 10 C -0.60 -15.73 8.82 -34.44 -0.30 -16.04 16 11 H 0.06 1.63 7.99 -52.49 -0.42 1.21 16 12 C 0.04 0.97 5.30 -17.82 -0.09 0.87 16 13 N -0.90 -26.26 13.70 55.43 0.76 -25.50 16 14 Si 1.04 23.78 26.22 -169.99 -4.46 19.33 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.27 -5.56 5.73 56.52 0.32 -5.23 16 18 C -0.13 -2.65 4.87 -26.43 -0.13 -2.78 16 19 C -0.04 -0.74 6.33 -27.50 -0.17 -0.91 16 20 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.06 0.77 8.03 -51.93 -0.42 0.36 16 23 H 0.16 2.28 8.06 -52.49 -0.42 1.85 16 24 H 0.08 1.49 8.12 -51.93 -0.42 1.07 16 25 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 26 H 0.27 7.82 8.73 -40.82 -0.36 7.46 16 27 H 0.08 1.72 4.79 -51.93 -0.25 1.47 16 28 H 0.06 1.20 8.12 -51.93 -0.42 0.78 16 29 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 LS Contribution 245.15 15.07 3.69 3.69 Total: -1.00 -29.56 245.15 -6.99 -36.55 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -4.05 Total: 1.07 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -2.48 Total: -16.01 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: 0.30 Total: -44.63 kcal Atomic # 14 Polarization: 23.78 SS G_CDS: -4.46 Total: 19.33 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -29.56 -6.99 -36.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261066636.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.826 kcal (2) G-P(sol) polarization free energy of solvation -29.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds