Wall clock time and date at job start Mon Mar 30 2020 02:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34853 * 126.65448 * 2 1 4 4 N 1.34289 * 108.07661 * 180.02562 * 3 2 1 5 5 C 1.30098 * 109.20788 * 0.02922 * 4 3 2 6 6 N 1.35415 * 108.62795 * 359.94747 * 5 4 3 7 7 C 1.46473 * 124.82640 * 180.02562 * 6 5 4 8 8 C 1.53262 * 108.79837 * 17.10279 * 7 6 5 9 9 H 1.09003 * 109.46308 * 69.65121 * 8 7 6 10 10 C 1.50695 * 109.46713 * 189.64395 * 8 7 6 11 11 H 1.07996 * 120.00119 * 5.65925 * 10 8 7 12 12 C 1.37881 * 119.99955 * 185.67105 * 10 8 7 13 13 N 1.31518 * 119.99804 * 195.70835 * 12 10 8 14 14 Si 1.86799 * 120.00149 * 15.69853 * 12 10 8 15 15 H 1.48499 * 109.47262 * 180.02562 * 14 12 10 16 16 H 1.48505 * 109.46749 * 60.00595 * 14 12 10 17 17 H 1.48499 * 109.47339 * 300.00909 * 14 12 10 18 18 C 1.53157 * 109.49930 * 309.64894 * 8 7 6 19 19 C 1.51041 * 127.38574 * 179.89281 * 5 4 3 20 20 H 1.09003 * 109.47181 * 269.94858 * 1 2 3 21 21 H 1.08997 * 109.47324 * 29.95392 * 1 2 3 22 22 H 1.09004 * 109.46825 * 149.95148 * 1 2 3 23 23 H 1.08000 * 125.96429 * 0.05503 * 3 2 1 24 24 H 1.09002 * 109.58699 * 257.31001 * 7 6 5 25 25 H 1.08996 * 109.69815 * 136.96505 * 7 6 5 26 26 H 0.96991 * 120.00075 * 354.62591 * 13 12 10 27 27 H 1.08994 * 109.51133 * 189.40971 * 18 8 7 28 28 H 1.08997 * 109.50783 * 309.55139 * 18 8 7 29 29 H 1.09001 * 109.71463 * 315.72413 * 19 5 4 30 30 H 1.08994 * 109.72173 * 76.33079 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3120 1.0819 0.0000 4 7 3.5850 0.6540 -0.0006 5 6 3.5993 -0.6469 -0.0015 6 7 2.3209 -1.0935 -0.0005 7 6 1.9278 -2.5045 -0.0005 8 6 3.1315 -3.3526 0.4247 9 1 3.3415 -3.1814 1.4805 10 6 2.8215 -4.8107 0.2041 11 1 1.9017 -5.0997 -0.2824 12 6 3.7122 -5.7760 0.6237 13 7 3.6090 -7.0068 0.1720 14 14 5.0656 -5.3355 1.8335 15 1 5.8833 -6.5410 2.1221 16 1 4.4595 -4.8347 3.0934 17 1 5.9301 -4.2803 1.2466 18 6 4.3543 -2.9590 -0.4092 19 6 4.8094 -1.5507 -0.0047 20 1 -0.3634 -0.0009 1.0277 21 1 -0.3634 0.8904 -0.5131 22 1 -0.3633 -0.8896 -0.5146 23 1 1.9894 2.1125 0.0008 24 1 1.6114 -2.7956 -1.0022 25 1 1.1073 -2.6573 0.7005 26 1 2.8615 -7.2545 -0.3943 27 1 5.1619 -3.6683 -0.2283 28 1 4.0916 -2.9674 -1.4670 29 1 5.5422 -1.1816 -0.7223 30 1 5.2512 -1.5773 0.9913 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261066636.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:13 Heat of formation + Delta-G solvation = 21.603011 kcal Electronic energy + Delta-G solvation = -13530.944752 eV Core-core repulsion = 11325.503039 eV Total energy + Delta-G solvation = -2205.441713 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.24982 -38.02013 -34.69377 -34.50976 -31.86694 -30.91408 -27.35161 -26.52385 -24.01399 -22.61920 -21.52980 -19.77516 -19.64957 -17.36149 -16.86594 -16.13003 -15.36104 -15.10682 -15.04413 -14.89113 -14.43451 -13.96590 -13.70082 -13.47332 -13.22440 -12.82346 -12.55235 -12.36767 -12.07576 -11.74775 -11.44363 -11.04741 -10.83212 -10.48395 -10.46299 -9.06227 -8.79675 -6.44286 1.11200 1.47812 1.53373 1.72150 1.92802 2.14791 2.46428 3.01992 3.47703 3.77869 3.83852 3.97745 4.15369 4.34044 4.37050 4.46624 4.57135 4.61928 4.74383 4.84020 4.96157 5.02801 5.06561 5.23149 5.46919 5.58384 5.79438 5.92369 5.99145 6.28322 6.50924 7.16430 7.33667 8.61117 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.047061 B = 0.010666 C = 0.009343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.833156 B = 2624.620266 C = 2996.142863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.038 4.038 3 C -0.055 4.055 4 N -0.521 5.521 5 C 0.190 3.810 6 N -0.453 5.453 7 C 0.127 3.873 8 C 0.012 3.988 9 H 0.032 0.968 10 C -0.600 4.600 11 H 0.028 0.972 12 C -0.012 4.012 13 N -0.935 5.935 14 Si 1.075 2.925 15 H -0.291 1.291 16 H -0.268 1.268 17 H -0.233 1.233 18 C -0.122 4.122 19 C -0.034 4.034 20 H 0.082 0.918 21 H 0.104 0.896 22 H 0.061 0.939 23 H 0.192 0.808 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.255 0.745 27 H 0.075 0.925 28 H 0.050 0.950 29 H 0.101 0.899 30 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.670 12.461 0.904 12.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.154 4.154 3 C -0.202 4.202 4 N -0.241 5.241 5 C -0.072 4.072 6 N -0.136 5.136 7 C 0.005 3.995 8 C -0.008 4.008 9 H 0.050 0.950 10 C -0.638 4.638 11 H 0.046 0.954 12 C -0.211 4.211 13 N -0.570 5.570 14 Si 0.896 3.104 15 H -0.217 1.217 16 H -0.193 1.193 17 H -0.157 1.157 18 C -0.160 4.160 19 C -0.072 4.072 20 H 0.100 0.900 21 H 0.123 0.877 22 H 0.080 0.920 23 H 0.209 0.791 24 H 0.089 0.911 25 H 0.105 0.895 26 H 0.064 0.936 27 H 0.093 0.907 28 H 0.069 0.931 29 H 0.120 0.880 30 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.744 12.201 1.660 12.336 hybrid contribution -2.436 -0.510 -1.065 2.707 sum -3.180 11.691 0.595 12.130 Atomic orbital electron populations 1.20291 0.84757 1.04174 1.03557 1.21844 0.96329 0.86392 1.10799 1.22567 0.87775 0.99538 1.10370 1.69985 1.23795 1.08547 1.21728 1.23572 0.86932 0.90761 1.05951 1.45672 1.07130 1.07659 1.53089 1.21922 0.99658 0.75754 1.02144 1.19238 0.91789 0.93820 0.95909 0.94981 1.21969 1.07586 0.91496 1.42797 0.95375 1.27093 1.02913 0.92954 0.98159 1.70990 1.30311 1.21844 1.33842 0.83699 0.74687 0.76758 0.75236 1.21729 1.19340 1.15700 1.22094 0.99386 0.94663 0.99895 1.20330 0.91495 0.91508 1.03908 0.89985 0.87722 0.91984 0.79096 0.91051 0.89506 0.93619 0.90705 0.93078 0.88031 0.89039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.52 10.21 71.24 0.73 -0.79 16 2 C -0.04 -1.19 6.98 41.08 0.29 -0.90 16 3 C -0.05 -1.76 11.80 83.54 0.99 -0.77 16 4 N -0.52 -19.67 11.24 -187.51 -2.11 -21.78 16 5 C 0.19 7.19 7.65 138.23 1.06 8.25 16 6 N -0.45 -16.58 3.13 -499.37 -1.57 -18.15 16 7 C 0.13 4.85 5.93 86.47 0.51 5.36 16 8 C 0.01 0.51 1.69 -11.40 -0.02 0.50 16 9 H 0.03 1.41 6.80 -2.39 -0.02 1.39 16 10 C -0.60 -31.61 8.82 25.60 0.23 -31.39 16 11 H 0.03 1.61 7.99 -2.91 -0.02 1.59 16 12 C -0.01 -0.65 5.30 84.66 0.45 -0.21 16 13 N -0.93 -55.96 13.70 21.45 0.29 -55.66 16 14 Si 1.07 46.83 26.22 68.60 1.80 48.63 16 15 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 16 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 17 H -0.23 -8.74 5.73 99.48 0.57 -8.17 16 18 C -0.12 -4.85 4.87 30.79 0.15 -4.70 16 19 C -0.03 -1.17 6.33 30.10 0.19 -0.98 16 20 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 21 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 22 H 0.06 1.36 8.03 -2.38 -0.02 1.35 16 23 H 0.19 4.69 8.06 -2.91 -0.02 4.67 16 24 H 0.07 2.77 8.12 -2.39 -0.02 2.75 16 25 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 26 H 0.25 15.43 8.73 -92.72 -0.81 14.62 16 27 H 0.07 3.04 4.79 -2.39 -0.01 3.03 16 28 H 0.05 2.07 8.12 -2.39 -0.02 2.05 16 29 H 0.10 3.11 8.14 -2.39 -0.02 3.10 16 30 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -63.49 245.15 3.93 -59.56 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.95 Total: 13.02 kcal Atomic # 6 Polarization: -30.19 SS G_CDS: 4.56 Total: -25.63 kcal Atomic # 7 Polarization: -92.21 SS G_CDS: -3.38 Total: -95.59 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.80 Total: 48.63 kcal Total: -63.49 3.93 -59.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261066636.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.167 kcal (2) G-P(sol) polarization free energy of solvation -63.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds