Wall clock time and date at job start Mon Mar 30 2020 02:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34854 * 126.65320 * 2 1 4 4 N 1.34288 * 108.06897 * 180.02562 * 3 2 1 5 5 C 1.30094 * 109.21432 * 0.02562 * 4 3 2 6 6 N 1.35424 * 108.62496 * 359.96260 * 5 4 3 7 7 C 1.46478 * 124.82245 * 180.02562 * 6 5 4 8 8 C 1.53264 * 108.79755 * 17.12370 * 7 6 5 9 9 C 1.53145 * 109.50436 * 309.64697 * 8 7 6 10 10 C 1.51041 * 127.39228 * 179.91494 * 5 4 3 11 11 H 1.09006 * 109.71302 * 76.39666 * 10 5 4 12 12 C 1.50704 * 109.75282 * 315.77003 * 10 5 4 13 13 H 1.07993 * 119.99756 * 276.05128 * 12 10 5 14 14 C 1.37870 * 119.99796 * 96.04855 * 12 10 5 15 15 N 1.31515 * 120.00165 * 185.50533 * 14 12 10 16 16 Si 1.86800 * 120.00406 * 5.50751 * 14 12 10 17 17 H 1.48499 * 109.47407 * 84.79863 * 16 14 12 18 18 H 1.48504 * 109.47553 * 204.80073 * 16 14 12 19 19 H 1.48510 * 109.47020 * 324.80207 * 16 14 12 20 20 H 1.08999 * 109.46885 * 269.99507 * 1 2 3 21 21 H 1.08996 * 109.47109 * 29.99263 * 1 2 3 22 22 H 1.08997 * 109.47426 * 149.99955 * 1 2 3 23 23 H 1.07996 * 125.96749 * 359.97438 * 3 2 1 24 24 H 1.08992 * 109.58950 * 257.32462 * 7 6 5 25 25 H 1.09003 * 109.69038 * 136.98118 * 7 6 5 26 26 H 1.08997 * 109.46063 * 189.63610 * 8 7 6 27 27 H 1.08999 * 109.46343 * 69.65686 * 8 7 6 28 28 H 1.09006 * 109.50786 * 309.54995 * 9 8 7 29 29 H 1.08999 * 109.54615 * 189.43695 * 9 8 7 30 30 H 0.96998 * 120.00399 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3121 1.0819 0.0000 4 7 3.5850 0.6539 -0.0006 5 6 3.5993 -0.6470 -0.0015 6 7 2.3208 -1.0935 -0.0007 7 6 1.9277 -2.5046 -0.0008 8 6 3.1312 -3.3526 0.4254 9 6 4.3545 -2.9592 -0.4078 10 6 4.8093 -1.5509 -0.0041 11 1 5.2500 -1.5783 0.9925 12 6 5.8239 -1.0409 -0.9949 13 1 5.7379 -1.3028 -2.0391 14 6 6.8618 -0.2399 -0.5682 15 7 7.6841 0.2936 -1.4450 16 14 7.1003 0.0874 1.2554 17 1 7.8883 -1.0177 1.8578 18 1 7.8268 1.3697 1.4373 19 1 5.7752 0.1705 1.9208 20 1 -0.3633 -0.0001 1.0277 21 1 -0.3633 0.8900 -0.5137 22 1 -0.3634 -0.8899 -0.5138 23 1 1.9895 2.1125 -0.0004 24 1 1.6118 -2.7959 -1.0024 25 1 1.1068 -2.6572 0.7000 26 1 2.9069 -4.4072 0.2659 27 1 3.3405 -3.1813 1.4813 28 1 4.0924 -2.9679 -1.4658 29 1 5.1622 -3.6685 -0.2271 30 1 8.4145 0.8568 -1.1448 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261075908.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:08 Heat of formation + Delta-G solvation = 46.887090 kcal Electronic energy + Delta-G solvation = -13664.324640 eV Core-core repulsion = 11459.979326 eV Total energy + Delta-G solvation = -2204.345313 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.45805 -36.04692 -33.62494 -31.89588 -30.39853 -29.18212 -25.81643 -25.01293 -22.05159 -21.28270 -19.76000 -18.12141 -16.90691 -15.76782 -15.25423 -14.30736 -13.91416 -13.83994 -13.46513 -12.64657 -12.61279 -12.50976 -12.39250 -11.99197 -11.75764 -11.39429 -10.82072 -10.71819 -10.30207 -9.71166 -9.69116 -9.40020 -8.78389 -8.71980 -8.45852 -7.25953 -6.02109 -4.04276 2.81467 3.38049 3.48773 3.49797 3.60137 4.16676 4.55317 4.93434 5.07266 5.16710 5.28835 5.37040 5.46499 5.62963 5.73943 5.77938 5.87511 6.00327 6.04075 6.22963 6.35819 6.38072 6.57849 6.91199 7.03660 7.23819 7.60679 7.69202 8.13070 8.51278 8.98406 9.22961 9.61684 11.10231 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.035825 B = 0.013255 C = 0.011165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.382351 B = 2111.850424 C = 2507.181630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.069 4.069 3 C -0.036 4.036 4 N -0.479 5.479 5 C 0.250 3.750 6 N -0.468 5.468 7 C 0.111 3.889 8 C -0.138 4.138 9 C -0.111 4.111 10 C 0.091 3.909 11 H 0.055 0.945 12 C -0.503 4.503 13 H 0.074 0.926 14 C 0.091 3.909 15 N -0.891 5.891 16 Si 0.880 3.120 17 H -0.281 1.281 18 H -0.289 1.289 19 H -0.258 1.258 20 H 0.060 0.940 21 H 0.072 0.928 22 H 0.054 0.946 23 H 0.155 0.845 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.411 -5.897 4.713 14.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.182 4.182 3 C -0.184 4.184 4 N -0.195 5.195 5 C -0.013 4.013 6 N -0.153 5.153 7 C -0.012 4.012 8 C -0.175 4.175 9 C -0.149 4.149 10 C 0.071 3.929 11 H 0.073 0.927 12 C -0.540 4.540 13 H 0.092 0.908 14 C -0.113 4.113 15 N -0.527 5.527 16 Si 0.707 3.293 17 H -0.207 1.207 18 H -0.215 1.215 19 H -0.182 1.182 20 H 0.079 0.921 21 H 0.091 0.909 22 H 0.073 0.927 23 H 0.173 0.827 24 H 0.091 0.909 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.620 -5.389 4.680 13.637 hybrid contribution -0.706 -0.052 0.788 1.060 sum -12.326 -5.440 5.468 14.541 Atomic orbital electron populations 1.20014 0.88446 1.02213 1.01426 1.20856 0.93698 0.87775 1.15888 1.22098 0.89352 0.97631 1.09344 1.70161 1.20341 1.09112 1.19878 1.25164 0.84986 0.91444 0.99696 1.45571 1.07578 1.05691 1.56480 1.21739 0.98372 0.79327 1.01772 1.21985 0.95415 0.98778 1.01361 1.21755 0.95577 0.98353 0.99245 1.18021 0.88128 0.88112 0.98684 0.92679 1.20580 1.07075 1.31519 0.94833 0.90822 1.24950 0.95246 0.93541 0.97589 1.69898 1.16962 1.31728 1.34141 0.86784 0.78731 0.77473 0.86304 1.20740 1.21471 1.18205 0.92126 0.90872 0.92710 0.82738 0.90899 0.90679 0.90471 0.91385 0.91962 0.90872 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.81 10.21 36.01 0.37 -0.45 16 2 C -0.07 -1.28 6.98 -81.80 -0.57 -1.85 16 3 C -0.04 -0.76 11.80 -17.68 -0.21 -0.97 16 4 N -0.48 -12.41 11.12 -10.62 -0.12 -12.53 16 5 C 0.25 6.03 6.99 -155.24 -1.08 4.94 16 6 N -0.47 -9.26 3.13 -109.19 -0.34 -9.60 16 7 C 0.11 1.64 6.69 -3.92 -0.03 1.62 16 8 C -0.14 -2.01 5.94 -26.52 -0.16 -2.17 16 9 C -0.11 -2.09 5.27 -26.45 -0.14 -2.23 16 10 C 0.09 2.19 2.17 -92.55 -0.20 1.99 16 11 H 0.06 1.34 5.27 -51.93 -0.27 1.07 16 12 C -0.50 -14.36 8.76 -34.44 -0.30 -14.67 16 13 H 0.07 2.28 8.06 -52.49 -0.42 1.86 16 14 C 0.09 2.69 5.47 -17.82 -0.10 2.59 16 15 N -0.89 -27.86 13.96 55.43 0.77 -27.09 16 16 Si 0.88 22.79 27.01 -169.99 -4.59 18.20 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 18 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 19 H -0.26 -6.72 6.79 56.52 0.38 -6.34 16 20 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 21 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 22 H 0.05 0.63 8.02 -51.93 -0.42 0.22 16 23 H 0.16 2.82 8.06 -52.49 -0.42 2.40 16 24 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.07 1.00 8.12 -51.93 -0.42 0.58 16 28 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 249.26 15.07 3.76 3.76 Total: -1.00 -33.99 249.26 -7.01 -40.99 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: -4.07 Total: -2.56 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -2.42 Total: -11.19 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: 0.31 Total: -49.21 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -4.59 Total: 18.20 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -33.99 -7.01 -40.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261075908.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.880 kcal (2) G-P(sol) polarization free energy of solvation -33.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds