Wall clock time and date at job start Mon Mar 30 2020 02:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34856 * 125.96269 * 2 1 4 4 N 1.36318 * 106.68719 * 179.97438 * 3 2 1 5 5 C 1.35419 * 107.39863 * 0.04111 * 4 3 2 6 6 N 1.30088 * 108.62739 * 359.94578 * 5 4 3 7 7 C 1.51050 * 123.98001 * 179.97438 * 5 4 3 8 8 H 1.09003 * 109.70948 * 103.77577 * 7 5 4 9 9 C 1.50700 * 109.71288 * 224.37053 * 7 5 4 10 10 H 1.07999 * 119.99988 * 120.00024 * 9 7 5 11 11 C 1.37885 * 120.00047 * 300.00204 * 9 7 5 12 12 N 1.31518 * 119.99792 * 359.72305 * 11 9 7 13 13 Si 1.86795 * 120.00009 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47088 * 89.99795 * 13 11 9 15 15 H 1.48495 * 109.47293 * 209.99997 * 13 11 9 16 16 H 1.48507 * 109.47015 * 329.99955 * 13 11 9 17 17 C 1.53396 * 108.21189 * 344.05087 * 7 5 4 18 18 C 1.53192 * 109.22396 * 48.83041 * 17 7 5 19 19 C 1.46476 * 127.77385 * 180.10107 * 4 3 2 20 20 H 1.09003 * 109.47326 * 90.00155 * 1 2 3 21 21 H 1.09004 * 109.47187 * 210.00027 * 1 2 3 22 22 H 1.09007 * 109.47205 * 330.00020 * 1 2 3 23 23 H 1.08004 * 126.65820 * 359.97438 * 3 2 1 24 24 H 0.97000 * 119.99468 * 179.97438 * 12 11 9 25 25 H 1.08996 * 109.50659 * 168.74777 * 17 7 5 26 26 H 1.09005 * 109.50521 * 288.88346 * 17 7 5 27 27 H 1.09004 * 109.46251 * 170.49722 * 18 17 7 28 28 H 1.09005 * 109.49075 * 50.49918 * 18 17 7 29 29 H 1.08988 * 109.58687 * 282.58373 * 19 4 3 30 30 H 1.09003 * 109.58167 * 42.86232 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2989 1.0915 0.0000 4 7 3.5857 0.6415 0.0006 5 6 3.5413 -0.7119 0.0000 6 7 2.2956 -1.0869 0.0003 7 6 4.7655 -1.5967 -0.0002 8 1 4.9202 -2.0105 0.9963 9 6 4.5836 -2.7160 -0.9928 10 1 5.2732 -2.8243 -1.8169 11 6 3.5368 -3.6018 -0.8488 12 7 2.7003 -3.4732 0.1579 13 14 3.3118 -4.9896 -2.0787 14 1 4.0615 -6.1858 -1.6180 15 1 1.8690 -5.3225 -2.1909 16 1 3.8261 -4.5637 -3.4052 17 6 5.9748 -0.7419 -0.4000 18 6 5.9821 0.5431 0.4340 19 6 4.8148 1.4382 0.0029 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5139 22 1 -0.3634 0.8900 0.5139 23 1 1.9763 2.1223 -0.0004 24 1 1.9637 -4.0962 0.2589 25 1 6.8924 -1.3006 -0.2158 26 1 5.9079 -0.4891 -1.4583 27 1 6.9223 1.0721 0.2779 28 1 5.8776 0.2920 1.4896 29 1 5.0007 1.8261 -0.9986 30 1 4.7113 2.2676 0.7025 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261092088.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:53 Heat of formation + Delta-G solvation = 62.339164 kcal Electronic energy + Delta-G solvation = -13750.700791 eV Core-core repulsion = 11547.025530 eV Total energy + Delta-G solvation = -2203.675261 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.00635 -35.85397 -33.38640 -31.18833 -30.32185 -28.07504 -25.97409 -24.68163 -21.87111 -21.18704 -18.99382 -17.96652 -16.49800 -15.46732 -14.92332 -14.32525 -13.56106 -13.33060 -13.08480 -12.80770 -12.47812 -12.17931 -11.66543 -11.46484 -11.24500 -10.95864 -10.78124 -10.47608 -10.35337 -10.00968 -9.43856 -9.17517 -8.42156 -8.16930 -7.86322 -6.90326 -5.70969 -3.83539 3.20314 3.43206 3.50254 3.52325 3.85627 4.54184 4.69347 5.14072 5.28354 5.45752 5.54813 5.67730 5.85425 5.96540 6.04093 6.12019 6.22041 6.37622 6.41877 6.57329 6.61788 6.71522 6.89435 7.20299 7.46716 7.68712 7.98924 8.09760 8.33972 8.62052 9.10596 9.77348 9.82362 11.29326 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.028364 B = 0.015490 C = 0.010706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.931516 B = 1807.152024 C = 2614.608260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C -0.029 4.029 3 C -0.107 4.107 4 N -0.481 5.481 5 C 0.260 3.740 6 N -0.410 5.410 7 C 0.127 3.873 8 H 0.046 0.954 9 C -0.547 4.547 10 H 0.057 0.943 11 C 0.079 3.921 12 N -0.809 5.809 13 Si 0.884 3.116 14 H -0.283 1.283 15 H -0.288 1.288 16 H -0.278 1.278 17 C -0.114 4.114 18 C -0.134 4.134 19 C 0.113 3.887 20 H 0.053 0.947 21 H 0.063 0.937 22 H 0.051 0.949 23 H 0.150 0.850 24 H 0.257 0.743 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.213 8.766 0.655 9.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.160 4.160 3 C -0.239 4.239 4 N -0.166 5.166 5 C -0.003 4.003 6 N -0.125 5.125 7 C 0.107 3.893 8 H 0.064 0.936 9 C -0.585 4.585 10 H 0.075 0.925 11 C -0.131 4.131 12 N -0.441 5.441 13 Si 0.712 3.288 14 H -0.209 1.209 15 H -0.214 1.214 16 H -0.203 1.203 17 C -0.153 4.153 18 C -0.172 4.172 19 C -0.011 4.011 20 H 0.072 0.928 21 H 0.082 0.918 22 H 0.070 0.930 23 H 0.167 0.833 24 H 0.067 0.933 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.835 7.978 0.778 8.224 hybrid contribution -0.078 0.394 -0.765 0.864 sum 1.757 8.372 0.013 8.554 Atomic orbital electron populations 1.19824 0.89642 1.01095 1.00683 1.21072 0.96155 0.90145 1.08636 1.21795 0.84378 0.98923 1.18779 1.45841 1.05045 1.08427 1.57332 1.25176 0.96665 0.78843 0.99581 1.70875 0.99488 1.25121 1.17000 1.17488 0.82991 0.90148 0.98673 0.93618 1.20638 1.14152 1.11296 1.12423 0.92512 1.24920 0.95540 0.97227 0.95372 1.70097 1.13057 1.32959 1.27967 0.86757 0.77123 0.82868 0.82083 1.20926 1.21373 1.20275 1.21759 1.00330 0.94346 0.98829 1.21930 0.96283 0.97608 1.01348 1.21666 0.84147 0.94010 1.01234 0.92848 0.91842 0.93001 0.83294 0.93314 0.91702 0.92480 0.91057 0.91403 0.91432 0.91136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.03 10.42 36.00 0.38 -0.65 16 2 C -0.03 -0.69 7.10 -82.72 -0.59 -1.28 16 3 C -0.11 -2.24 11.55 -16.76 -0.19 -2.44 16 4 N -0.48 -10.40 3.13 -113.74 -0.36 -10.76 16 5 C 0.26 6.74 6.84 -155.24 -1.06 5.68 16 6 N -0.41 -11.34 8.16 -6.88 -0.06 -11.39 16 7 C 0.13 3.23 2.50 -92.55 -0.23 3.00 16 8 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 9 C -0.55 -15.37 8.55 -34.44 -0.29 -15.66 16 10 H 0.06 1.56 7.75 -52.49 -0.41 1.16 16 11 C 0.08 2.27 5.11 -17.82 -0.09 2.18 16 12 N -0.81 -24.12 10.51 55.43 0.58 -23.54 16 13 Si 0.88 22.07 29.54 -169.99 -5.02 17.05 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 C -0.11 -2.27 5.23 -26.43 -0.14 -2.40 16 18 C -0.13 -2.14 5.94 -26.48 -0.16 -2.29 16 19 C 0.11 1.85 6.98 -3.90 -0.03 1.82 16 20 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 21 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 22 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.15 2.51 8.06 -52.48 -0.42 2.09 16 24 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.07 1.11 8.12 -51.93 -0.42 0.69 16 29 H 0.07 1.02 8.14 -51.94 -0.42 0.59 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 248.34 15.07 3.74 3.74 Total: -1.00 -32.44 248.34 -7.70 -40.14 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: -4.19 Total: -3.19 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -2.41 Total: -12.05 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: 0.17 Total: -45.69 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -32.44 -7.70 -40.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261092088.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.481 kcal (2) G-P(sol) polarization free energy of solvation -32.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds