Wall clock time and date at job start Mon Mar 30 2020 02:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32012 * 119.57951 * 2 1 4 4 C 1.31978 * 121.90822 * 180.26733 * 3 2 1 5 5 C 1.37920 * 120.84411 * 359.76950 * 4 3 2 6 6 C 1.39460 * 119.06273 * 359.97438 * 5 4 3 7 7 N 1.39169 * 120.86043 * 179.97438 * 6 5 4 8 8 C 1.46501 * 120.00472 * 0.02562 * 7 6 5 9 9 C 1.50696 * 109.47265 * 180.02562 * 8 7 6 10 10 H 1.08004 * 120.00306 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99851 * 180.02562 * 9 8 7 12 12 N 1.31508 * 119.99818 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99621 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47117 * 60.00593 * 13 11 9 15 15 H 1.48502 * 109.46725 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47478 * 299.99797 * 13 11 9 17 17 C 1.37869 * 119.57645 * 179.77349 * 2 1 3 18 18 C 1.50706 * 120.46775 * 0.02562 * 17 2 1 19 19 H 1.09000 * 109.47050 * 270.22942 * 1 2 3 20 20 H 1.09008 * 109.47072 * 30.22442 * 1 2 3 21 21 H 1.08993 * 109.47252 * 150.22559 * 1 2 3 22 22 H 1.08001 * 119.58258 * 179.74766 * 4 3 2 23 23 H 1.08002 * 120.46877 * 179.97438 * 5 4 3 24 24 H 0.96997 * 119.99809 * 180.02562 * 7 6 5 25 25 H 1.09000 * 109.46840 * 300.00303 * 8 7 6 26 26 H 1.09004 * 109.46730 * 60.00080 * 8 7 6 27 27 H 0.97003 * 119.99641 * 180.02562 * 12 11 9 28 28 H 1.08999 * 109.47015 * 269.72297 * 18 17 2 29 29 H 1.09000 * 109.46646 * 29.71449 * 18 17 2 30 30 H 1.09000 * 109.47248 * 149.72167 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1586 1.1481 0.0000 4 6 3.4773 1.2017 -0.0052 5 6 4.2320 0.0473 -0.0062 6 6 3.5823 -1.1867 -0.0010 7 7 4.3069 -2.3749 -0.0023 8 6 5.7715 -2.3399 -0.0086 9 6 6.3077 -3.7482 -0.0094 10 1 5.6258 -4.5858 -0.0052 11 6 7.6689 -3.9676 -0.0145 12 7 8.4993 -2.9478 -0.0181 13 14 8.3335 -5.7134 -0.0147 14 1 7.8507 -6.4267 -1.2244 15 1 9.8181 -5.6778 -0.0213 16 1 7.8603 -6.4235 1.2006 17 6 2.1875 -1.1990 0.0047 18 6 1.4350 -2.5048 0.0093 19 1 -0.3633 0.0041 1.0277 20 1 -0.3634 0.8880 -0.5174 21 1 -0.3633 -0.8919 -0.5103 22 1 3.9719 2.1618 -0.0092 23 1 5.3108 0.0982 -0.0109 24 1 3.8422 -3.2263 0.0010 25 1 6.1186 -1.8188 -0.9009 26 1 6.1262 -1.8162 0.8791 27 1 9.4569 -3.1022 -0.0221 28 1 1.2575 -2.8182 1.0381 29 1 0.4805 -2.3757 -0.5009 30 1 2.0226 -3.2646 -0.5058 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261109051.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:33 Heat of formation + Delta-G solvation = -1.427558 kcal Electronic energy + Delta-G solvation = -12855.365985 eV Core-core repulsion = 10648.925591 eV Total energy + Delta-G solvation = -2206.440394 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.22126 -37.44570 -34.99141 -34.52413 -32.09869 -29.13662 -28.87429 -27.29002 -24.76802 -22.80645 -21.78963 -19.26942 -17.74567 -17.54122 -16.59086 -15.81816 -15.80223 -15.03646 -14.94908 -14.75985 -14.16842 -13.99231 -13.65309 -13.46027 -13.13695 -12.91269 -12.77735 -12.61627 -12.22949 -11.94931 -11.58916 -11.51470 -10.68590 -10.27868 -9.62584 -8.52792 -8.34439 -6.49257 0.33445 0.72481 1.39923 1.42687 1.51054 2.30739 2.72876 2.99063 3.02554 3.61279 3.92619 4.05790 4.27789 4.44634 4.69359 4.75182 4.79442 4.85328 4.93869 4.96927 5.14665 5.21464 5.23227 5.28112 5.44122 5.48837 5.80188 5.96098 6.34087 6.63185 6.99932 7.23861 7.28442 8.77135 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.057524 B = 0.007132 C = 0.006383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.633494 B = 3924.752115 C = 4385.632481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.147 3.853 3 N -0.552 5.552 4 C 0.133 3.867 5 C -0.279 4.279 6 C 0.238 3.762 7 N -0.717 5.717 8 C 0.270 3.730 9 C -0.562 4.562 10 H 0.072 0.928 11 C 0.011 3.989 12 N -0.925 5.925 13 Si 0.979 3.021 14 H -0.265 1.265 15 H -0.281 1.281 16 H -0.265 1.265 17 C -0.235 4.235 18 C -0.096 4.096 19 H 0.088 0.912 20 H 0.076 0.924 21 H 0.095 0.905 22 H 0.172 0.828 23 H 0.114 0.886 24 H 0.401 0.599 25 H -0.006 1.006 26 H -0.006 1.006 27 H 0.270 0.730 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.780 1.416 0.035 12.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.011 3.989 3 N -0.267 5.267 4 C -0.023 4.023 5 C -0.305 4.305 6 C 0.122 3.878 7 N -0.343 5.343 8 C 0.147 3.853 9 C -0.599 4.599 10 H 0.090 0.910 11 C -0.189 4.189 12 N -0.564 5.564 13 Si 0.802 3.198 14 H -0.190 1.190 15 H -0.206 1.206 16 H -0.190 1.190 17 C -0.242 4.242 18 C -0.153 4.153 19 H 0.106 0.894 20 H 0.095 0.905 21 H 0.114 0.886 22 H 0.189 0.811 23 H 0.132 0.868 24 H 0.237 0.763 25 H 0.012 0.988 26 H 0.012 0.988 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.114 0.886 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.823 2.232 0.036 13.015 hybrid contribution 1.565 -1.561 0.014 2.211 sum -11.258 0.671 0.050 11.278 Atomic orbital electron populations 1.20811 0.86550 1.04210 1.03870 1.21409 0.98199 0.86982 0.92350 1.67597 1.09705 1.29424 1.19954 1.22624 0.89366 0.97821 0.92478 1.21699 1.00951 0.92925 1.14956 1.18434 0.91684 0.87546 0.90126 1.45160 1.06679 1.04996 1.77447 1.18647 0.75588 0.96937 0.94153 1.21529 0.92791 0.92343 1.53279 0.90965 1.25923 0.96885 1.02372 0.93762 1.70065 1.03656 1.32928 1.49722 0.85294 0.77055 0.78147 0.79291 1.19006 1.20643 1.18997 1.20419 0.91184 0.98696 1.13932 1.20611 1.00153 0.91859 1.02687 0.89354 0.90483 0.88627 0.81097 0.86827 0.76273 0.98808 0.98785 0.92095 0.90826 0.88556 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.05 9.77 71.24 0.70 -1.35 16 2 C 0.15 4.57 6.77 42.44 0.29 4.86 16 3 N -0.55 -19.04 10.27 -184.20 -1.89 -20.93 16 4 C 0.13 4.62 11.17 84.60 0.95 5.57 16 5 C -0.28 -11.21 9.38 22.49 0.21 -11.00 16 6 C 0.24 9.56 6.67 38.57 0.26 9.82 16 7 N -0.72 -31.08 5.63 -342.60 -1.93 -33.01 16 8 C 0.27 14.15 4.70 85.63 0.40 14.56 16 9 C -0.56 -30.49 9.28 25.60 0.24 -30.25 16 10 H 0.07 3.67 7.60 -2.91 -0.02 3.65 16 11 C 0.01 0.59 5.46 84.66 0.46 1.05 16 12 N -0.93 -53.88 13.29 21.45 0.28 -53.60 16 13 Si 0.98 42.05 29.54 68.60 2.03 44.07 16 14 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 15 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 16 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 17 C -0.23 -7.76 5.91 -19.65 -0.12 -7.88 16 18 C -0.10 -2.39 9.22 71.24 0.66 -1.74 16 19 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 20 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 21 H 0.10 1.57 5.93 -2.39 -0.01 1.55 16 22 H 0.17 4.84 8.06 -2.91 -0.02 4.82 16 23 H 0.11 4.89 6.89 -2.91 -0.02 4.87 16 24 H 0.40 15.79 6.47 -92.71 -0.60 15.19 16 25 H -0.01 -0.34 7.99 -2.39 -0.02 -0.36 16 26 H -0.01 -0.32 8.00 -2.39 -0.02 -0.34 16 27 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 28 H 0.07 1.68 8.14 -2.39 -0.02 1.67 16 29 H 0.10 1.81 5.94 -2.39 -0.01 1.80 16 30 H 0.05 1.40 6.66 -2.39 -0.02 1.39 16 Total: -1.00 -63.17 254.66 3.07 -60.10 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 0.54 Total: 19.74 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: 4.04 Total: -16.36 kcal Atomic # 7 Polarization: -104.01 SS G_CDS: -3.54 Total: -107.54 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Total: -63.17 3.07 -60.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261109051.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.669 kcal (2) G-P(sol) polarization free energy of solvation -63.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds