Wall clock time and date at job start Mon Mar 30 2020 02:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37899 * 120.46462 * 2 1 4 4 N 1.31996 * 120.84244 * 180.29602 * 3 2 1 5 5 C 1.31999 * 121.90747 * 359.70660 * 4 3 2 6 6 C 1.37892 * 120.84653 * 359.97438 * 5 4 3 7 7 C 1.50693 * 120.47026 * 180.02562 * 6 5 4 8 8 C 1.39475 * 120.46756 * 179.70296 * 2 1 3 9 9 N 1.39165 * 120.86665 * 359.97438 * 8 2 1 10 10 C 1.46901 * 110.99766 * 299.72018 * 9 8 2 11 11 C 1.50696 * 109.47073 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00030 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99916 * 179.97438 * 11 10 9 14 14 N 1.31511 * 119.99831 * 180.02562 * 13 11 10 15 15 Si 1.86793 * 119.99935 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.47272 * 89.99828 * 15 13 11 17 17 H 1.48502 * 109.47233 * 209.99592 * 15 13 11 18 18 H 1.48500 * 109.47204 * 329.99605 * 15 13 11 19 19 H 1.09005 * 109.46638 * 270.29736 * 1 2 3 20 20 H 1.08999 * 109.47374 * 30.29326 * 1 2 3 21 21 H 1.09000 * 109.47185 * 150.29681 * 1 2 3 22 22 H 1.07995 * 119.58125 * 0.02562 * 3 2 1 23 23 H 1.07999 * 119.57686 * 180.02562 * 5 4 3 24 24 H 1.09002 * 109.47236 * 269.98295 * 7 6 5 25 25 H 1.09006 * 109.46967 * 29.97754 * 7 6 5 26 26 H 1.08992 * 109.47579 * 149.97875 * 7 6 5 27 27 H 1.00898 * 110.99911 * 63.66651 * 9 8 2 28 28 H 1.09007 * 109.46737 * 299.99827 * 10 9 8 29 29 H 1.08998 * 109.47478 * 59.99448 * 10 9 8 30 30 H 0.97004 * 120.00032 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2061 1.1886 0.0000 4 7 3.5260 1.1973 -0.0059 5 6 4.2311 0.0814 -0.0062 6 6 3.6079 -1.1487 0.0002 7 6 4.4212 -2.4173 0.0003 8 6 2.2142 -1.2021 0.0062 9 7 1.5466 -2.4232 0.0131 10 6 0.6980 -2.5525 1.2052 11 6 -0.0077 -3.8837 1.1775 12 1 0.1580 -4.5657 0.3567 13 6 -0.8641 -4.2314 2.2006 14 7 -1.4795 -5.3934 2.1767 15 14 -1.1501 -3.0521 3.6207 16 1 -2.2933 -2.1598 3.3006 17 1 -1.4547 -3.8244 4.8519 18 1 0.0702 -2.2344 3.8385 19 1 -0.3633 0.0053 1.0277 20 1 -0.3634 0.8873 -0.5184 21 1 -0.3633 -0.8926 -0.5092 22 1 1.6669 2.1243 0.0004 23 1 5.3099 0.1324 -0.0107 24 1 4.6125 -2.7264 -1.0273 25 1 5.3690 -2.2412 0.5092 26 1 3.8706 -3.2018 0.5192 27 1 1.0062 -2.5446 -0.8303 28 1 1.3166 -2.4873 2.1003 29 1 -0.0401 -1.7505 1.2145 30 1 -2.0823 -5.6379 2.8963 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261116168.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:35 Heat of formation + Delta-G solvation = 11.171741 kcal Electronic energy + Delta-G solvation = -13213.391706 eV Core-core repulsion = 11007.497658 eV Total energy + Delta-G solvation = -2205.894047 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.49337 -37.66523 -34.80977 -34.57374 -32.54491 -29.77804 -28.09672 -27.46691 -23.83588 -22.75003 -22.13490 -19.27559 -18.10576 -17.52252 -16.85776 -15.78731 -15.35956 -15.24798 -15.11017 -14.55745 -14.17752 -14.09364 -13.91487 -13.32323 -13.27979 -13.05731 -12.84239 -12.57826 -12.31813 -11.89654 -11.54757 -10.85923 -10.48595 -10.11069 -9.69364 -9.47154 -8.33671 -6.37890 0.17726 0.25065 1.30333 1.33780 1.43506 2.29561 2.79950 3.00366 3.24809 3.57373 3.88683 3.90157 4.11299 4.37997 4.52682 4.59528 4.63185 4.72844 4.83767 4.87538 4.92638 5.09652 5.16796 5.35062 5.45550 5.53665 5.71848 5.98152 6.33805 6.64884 6.70987 7.02449 7.25902 8.82746 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.039276 B = 0.009857 C = 0.008824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.737726 B = 2840.033733 C = 3172.577091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.179 4.179 3 C 0.091 3.909 4 N -0.504 5.504 5 C 0.090 3.910 6 C -0.128 4.128 7 C -0.096 4.096 8 C 0.118 3.882 9 N -0.640 5.640 10 C 0.175 3.825 11 C -0.526 4.526 12 H 0.042 0.958 13 C 0.015 3.985 14 N -0.943 5.943 15 Si 0.941 3.059 16 H -0.259 1.259 17 H -0.281 1.281 18 H -0.258 1.258 19 H 0.068 0.932 20 H 0.097 0.903 21 H 0.058 0.942 22 H 0.176 0.824 23 H 0.183 0.817 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.056 0.944 27 H 0.352 0.648 28 H 0.012 0.988 29 H 0.018 0.982 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.584 12.500 -3.409 15.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.183 4.183 3 C -0.066 4.066 4 N -0.213 5.213 5 C -0.067 4.067 6 C -0.131 4.131 7 C -0.153 4.153 8 C 0.014 3.986 9 N -0.273 5.273 10 C 0.048 3.952 11 C -0.564 4.564 12 H 0.060 0.940 13 C -0.183 4.183 14 N -0.583 5.583 15 Si 0.765 3.235 16 H -0.183 1.183 17 H -0.206 1.206 18 H -0.182 1.182 19 H 0.087 0.913 20 H 0.115 0.885 21 H 0.076 0.924 22 H 0.193 0.807 23 H 0.200 0.800 24 H 0.097 0.903 25 H 0.104 0.896 26 H 0.075 0.925 27 H 0.177 0.823 28 H 0.030 0.970 29 H 0.035 0.965 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.401 12.815 -3.058 15.626 hybrid contribution -1.625 -0.473 0.450 1.751 sum 6.776 12.342 -2.608 14.319 Atomic orbital electron populations 1.20813 0.89682 1.03651 1.02535 1.21915 0.98612 0.94935 1.02880 1.22817 0.89858 0.97641 0.96248 1.67715 1.08560 1.31785 1.13196 1.22958 1.01287 0.86257 0.96200 1.21203 0.93019 0.98302 1.00558 1.20551 0.98563 0.93313 1.02908 1.19376 0.93763 0.89082 0.96364 1.57771 1.34567 1.28629 1.06285 1.19995 0.90919 0.95721 0.88566 1.21228 1.24903 1.02108 1.08157 0.93978 1.25746 0.95010 0.96822 1.00736 1.70029 1.30439 1.23147 1.34670 0.85801 0.79631 0.79315 0.78762 1.18308 1.20643 1.18220 0.91339 0.88462 0.92356 0.80650 0.79980 0.90312 0.89648 0.92516 0.82348 0.97000 0.96493 0.92245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.13 8.16 71.23 0.58 -2.55 16 2 C -0.18 -5.62 5.77 -19.65 -0.11 -5.73 16 3 C 0.09 2.55 10.85 84.59 0.92 3.47 16 4 N -0.50 -14.77 10.36 -196.16 -2.03 -16.81 16 5 C 0.09 2.45 10.85 84.59 0.92 3.37 16 6 C -0.13 -3.95 5.91 -19.65 -0.12 -4.07 16 7 C -0.10 -2.62 9.82 71.23 0.70 -1.92 16 8 C 0.12 4.17 5.58 38.58 0.22 4.39 16 9 N -0.64 -25.90 5.25 -341.71 -1.80 -27.69 16 10 C 0.17 8.15 3.92 85.56 0.34 8.48 16 11 C -0.53 -29.64 9.87 25.60 0.25 -29.39 16 12 H 0.04 2.63 8.06 -2.91 -0.02 2.60 16 13 C 0.02 0.87 5.47 84.66 0.46 1.33 16 14 N -0.94 -57.80 13.96 21.45 0.30 -57.50 16 15 Si 0.94 43.22 27.47 68.60 1.88 45.11 16 16 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 17 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 18 H -0.26 -11.40 6.54 99.48 0.65 -10.75 16 19 H 0.07 2.06 7.15 -2.38 -0.02 2.04 16 20 H 0.10 2.09 8.10 -2.39 -0.02 2.07 16 21 H 0.06 1.84 6.56 -2.39 -0.02 1.82 16 22 H 0.18 3.75 8.06 -2.91 -0.02 3.73 16 23 H 0.18 3.65 8.06 -2.91 -0.02 3.62 16 24 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 25 H 0.08 1.82 8.09 -2.38 -0.02 1.80 16 26 H 0.06 1.90 7.55 -2.39 -0.02 1.88 16 27 H 0.35 13.81 8.14 -89.70 -0.73 13.08 16 28 H 0.01 0.59 7.20 -2.38 -0.02 0.57 16 29 H 0.02 0.77 3.91 -2.39 -0.01 0.76 16 30 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -65.09 251.32 2.87 -62.22 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.36 Total: 17.30 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: 4.15 Total: -22.63 kcal Atomic # 7 Polarization: -98.47 SS G_CDS: -3.53 Total: -102.00 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.88 Total: 45.11 kcal Total: -65.09 2.87 -62.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261116168.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.395 kcal (2) G-P(sol) polarization free energy of solvation -65.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds